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LOCUS XM_017140645 2665 bp mRNA linear INV 09-DEC-2024 helicase DDX10 (LOC108056717), mRNA. ACCESSION XM_017140645 VERSION XM_017140645.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140645.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2665 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2665 /gene="LOC108056717" /note="probable ATP-dependent RNA helicase DDX10; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056717" CDS 128..2611 /gene="LOC108056717" /codon_start=1 /product="probable ATP-dependent RNA helicase DDX10" /protein_id="XP_016996134.2" /db_xref="GeneID:108056717" /translation="MQRQKPKGPGKPGPRFKPGAGRAKGAPGGGGANKLKRPRQEFNK SKVAATDAEIRELQAKYAEIDAPSIKKFAQFPLSKKTLKALSESKFLHPTQVQRDSIG PALLGKDVLGAAVTGSGKTLAFLIPVLEHLFVNKWSRSDGVGAIIISPTRELAYQIFE TLKKVGKHHDFSAGLIIGGKNLKFERTRMDQCNILICTPGRLLQHMDENPLFNTSTME VLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKEPVYVG YGATTPSEGEASTSKATPNGAILALPELLQQSYVVLNLEDKITMLWSFIKNHLKQKII VFVSSCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVA SRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMIGALKD QLNINIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFVSYIKSVFLQRNKRLFN VFNLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKESEKGVENPVPVLSKLTKQQ SFGGGSDEDTDDSDDEDFIKVKRRDHDVEGEPVQLEEIDEKKEEDEDPLVVPKREKLV TKASLAKKALKKNLQVNSKLKFDEEGETLADDRSQMKALSARNRTENQDQNDDDDGGI NLVLSKALLTEEDQYDKQRFRELVKKRHKLQRDKLRKKTEEAKGSDEEEEEEAAAENP EDADSDSDHSVDLSWLPDPDKIYKNKDRSAVAHSQPESESGDATDDDGKTDDDEDDSD DEPAYKKSKLTNKMTLMDTEAIAASLLGS" misc_feature 332..1600 /gene="LOC108056717" /note="Superfamily II DNA and RNA helicase [Replication, recombination and repair]; Region: SrmB; COG0513" /db_xref="CDD:440279" misc_feature 368..958 /gene="LOC108056717" /note="DEAD-box helicase domain of DEAD box protein 10; Region: DEADc_DDX10; cd17941" /db_xref="CDD:350699" misc_feature order(395..397,401..403,407..409,416..418,470..493, 797..799) /gene="LOC108056717" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350699" misc_feature 1541..1711 /gene="LOC108056717" /note="Domain of unknown function (DUF4217); Region: DUF4217; pfam13959" /db_xref="CDD:464056" polyA_site 2665 /gene="LOC108056717" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actgttttca aacctagtgg tggcagaaaa tcgatagtcc ccgaatcgga actcgttcca 61 tctctaatag caaccgcgtg cgattcgcaa tcggaatctt gtccagcttg tccagcaaac 121 agagggaatg cagcgccaga aacccaaggg accgggcaag ccgggtccgc gcttcaagcc 181 gggagcgggc agagccaagg gagcacccgg tggtggcggc gccaacaaac tgaagcgtcc 241 gcgccaggag ttcaacaagt ccaaagtggc cgccaccgat gcggagatcc gggagctgca 301 ggccaagtac gcggagatcg atgcgccgtc gatcaagaag ttcgcccagt ttccgctgtc 361 caagaagacg ctaaaagcgc tttccgaatc caagttcctg catcccacgc aggtgcagcg 421 cgacagcatt ggacccgccc tgctgggcaa ggatgtgctg ggtgcggcgg tcacgggcag 481 cggcaagaca ctggcctttc tcatacccgt tttggagcac ctgtttgtaa acaaatggtc 541 gcgcagcgat ggcgtgggcg ccatcatcat ctcgcccacc cgcgagctgg cctaccagat 601 cttcgagacg ctaaagaagg tgggcaagca ccacgacttc tccgccggct taattattgg 661 cggcaagaac ctgaaattcg agcgaacgcg catggatcag tgcaacatac tcatttgcac 721 acccggccgc ctgctgcagc acatggacga gaatccgctg ttcaacacga gcaccatgga 781 ggtgctggtt ctggacgagg ccgatcggtg tttggacatg ggcttccaga agaccttgaa 841 ctcgataatt gagaatttcc cgcccgtgcg gcaaacgctg ctcttctcgg ccacgcaaac 901 gaatacggtg caggatttgg cgcggcttaa tcttaaagaa ccggtctatg tgggctacgg 961 agcaacgacg cctagcgaag gagaagcttc cacttccaaa gcgacgccca acggagctat 1021 tttggccctc cccgagctgc tgcagcagag ctatgtagtg ctcaacctgg aggacaagat 1081 caccatgctg tggtcgttca tcaagaacca tctgaagcag aagatcattg tgttcgtttc 1141 cagctgcaag caggccaagt atctctacga gatcttctgc aaattgcgtc ccggcagccc 1201 gctgttggct ttgtatggca ccctccatca ggatcgtcgc atcgccatct acgaggattt 1261 tctgcgcaag agccacgtgg tcatgttctc cacggatgtc gcttcgcgtg gcctcgactt 1321 tccggccgtc aattgggtgg tgcagttgga ttgccccgag gatgtctcac agtatatcca 1381 tcgagcgggt cgttcggcgc gcaacaagac gcgtggcgag tgtcttttgg ttctgacgcc 1441 cagcgaggag gaatacatga ttggcgccct caaggatcag ctgaatatca acatacgttg 1501 cgtgcaaatc gatccgaaga aacttttctc gccgcgcgtc aaaatcgagg ccttcctggc 1561 ccaatttccc gagctgcggg ccaccgccca gcgtgccttt gtctcgtaca tcaagtcggt 1621 gttcctgcag cgcaacaagc gattgttcaa tgtttttaac ctcgatctgg atgcctttgc 1681 tcagtcgctc ggtttggcgg tcacgccgcg cgttcccttc ctcgaaaagt tcctctggcg 1741 gcagaagcag ctgcagcagc agaaggaaag cgaaaagggc gttgaaaatc ccgttcccgt 1801 tctcagcaag ctgaccaaac aacagagctt tggcggcggc tccgacgagg atacagatga 1861 cagcgatgac gaggacttta tcaaggtgaa gcgcagggat cacgatgtcg aaggggagcc 1921 agtgcagctg gaggagatcg acgagaaaaa ggaggaggac gaggacccac tggtggtgcc 1981 caagcgcgag aagctggtca ccaaggcctc gctggccaag aaggcgctga agaagaacct 2041 gcaggtcaac tcgaagctca agttcgacga agagggcgaa acgctggccg atgatcgcag 2101 tcaaatgaag gcactgagtg ccagaaaccg cacagagaat caggaccaga acgacgacga 2161 cgatggaggc atcaatctgg tgctatcgaa ggcactgctg accgaggagg atcagtacga 2221 caagcagcga tttagggagc tggtcaaaaa gcgacacaaa ctgcagcgcg acaagctgcg 2281 caagaaaacg gaggaagcca agggaagtga cgaggaggag gaggaggagg ctgctgctga 2341 aaatcccgaa gatgctgaca gcgacagtga ccattcggtg gacctctcct ggctccccga 2401 tcccgacaag atctacaaaa ataaggatcg aagtgcagtt gcgcattcac agcctgaatc 2461 ggaatcaggc gatgccaccg acgatgatgg gaaaacggac gacgatgaag acgactccga 2521 tgatgagccc gcctacaaaa agtccaagct aacgaataag atgactctga tggacacgga 2581 ggccattgcg gccagtcttt tgggtagcta agtaaggggc tcgactgtgt gaataaatta 2641 atgccaatta ttttttaaat aataa