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LOCUS XM_017140632 1979 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017140632 VERSION XM_017140632.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140632.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1979 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1979 /gene="Bx42" /note="Puff-specific protein Bx42; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056709" CDS 183..1847 /gene="Bx42" /codon_start=1 /product="puff-specific protein Bx42" /protein_id="XP_016996121.2" /db_xref="GeneID:108056709" /translation="MSLSSLLPTPTNAVWDREDERRLAARGAPKIGALVSAKIAAPPY GQRKDWIPRTEADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVKYD AIARQGHGKDKVVYSSISQLLPAEVLAEDAEELQRPDEETVLETTEETRLALEKLTNQ KITSALPVRHAQKAGPAQYIRYTPSQQGDAFNSGAKQRVIRMVEAQLDPMEPPKFRIN KKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKIPPCISNWKNAKGYTIPLDKRLAADGR GLQQVHINEKFAKMAEALYIADRKAREAVEARAQLEKKLAQKEKEKKEDMLRMMAQRA REERAGLRNPEAADPSSSVGPSGSGGGGGAEARERNDLRAERQRERQRDRNLQRAAPE KRSKLQRERERDISEQIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYD KPWRDSNTLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASRDAAAGQRSG PVEFEKEEDPFGLDQFLNMAKKAPKRAEEKSNERSSHSDRKRSRRD" misc_feature 723..1193 /gene="Bx42" /note="SKIP/SNW domain; Region: SKIP_SNW; pfam02731" /db_xref="CDD:460666" polyA_site 1979 /gene="Bx42" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcgcagtctg gcaaccccgc cgccgtacgc ttgtgtgtgt ctgtccgtgt gcgtgcgtgt 61 ttttttcccc acttttccat tgtattttgt gcttgcaaat cgagggaacg caataaaaaa 121 ggtggtttca cataggaact aagtcgcctc gccaacaaga agacaaccgc aaccgagccg 181 acatgtcgct atcgagcctg ctgcccacgc cgacgaacgc ggtctgggat cgggaggacg 241 agcgtcgcct ggccgcccgc ggagccccga agatcggagc cctggtctcc gccaaaatcg 301 cagctccgcc gtacggacag cgcaaggatt ggattcctcg cacggaggcc gactttggcg 361 acggcggcgc cttcccggag atccatgtgg cgcagtatcc gctgggcctc ggagcccccg 421 gaaatgtggg caagaagtcg gatgccctgg ccgttcggct ggacgacaag ggaaaggtga 481 aatacgatgc catagcgcgc caaggacatg gcaaggacaa ggtggtctac tcctccatct 541 cgcaactgct gccggctgaa gtcctagccg aagatgcgga ggaactgcag cgaccggacg 601 aggaaactgt gctggagacc acggaggaga ctcgcctggc gctggaaaag ctgaccaacc 661 agaagatcac ctcggcactg cccgtgcgcc acgcccagaa ggcgggtccc gcccagtaca 721 tccggtacac gccgtcgcag cagggcgacg ccttcaattc gggcgccaag cagcgggtca 781 ttcggatggt ggaggcgcag ctggatccga tggagccgcc caagttccgc atcaacaaga 841 agataccgcg cggccctccc tcgccgccgg cacccgtcct ccactcgccg tcgcgcaagg 901 tgacggtcaa ggagcagaag gagtggaaga tcccgccctg catatccaac tggaagaacg 961 ccaaaggtta caccattccg ctggacaagc gcctggcggc cgacggacgc ggcctgcagc 1021 aggtgcacat caacgagaag ttcgccaaga tggccgaggc gctgtacata gccgatcgca 1081 aggcccgcga ggcggtggag gcccgtgccc agctggagaa gaagctggcc cagaaggaga 1141 aggagaagaa ggaggatatg ctgcgcatga tggcgcaaag ggcacgcgag gagcgggcgg 1201 gtctgcgcaa cccagaggca gctgatccct catcatcagt aggtccatct ggatcaggag 1261 gcggcggagg agcagaggcg cgtgaacgca acgatttgcg ggcggagcgg cagagggagc 1321 gccagcggga caggaatctg cagcgagcgg ccccggaaaa gcgctctaaa ctgcagcggg 1381 agcgggaacg cgacatctcc gagcagatcg ccctcggcct gcccgccaag agtgccggca 1441 atggcgagac cctcttcgat cagcgcctct tcaacaccac caagggcatg gactccggtt 1501 acggcgacga cgaggcgtac aatgtgtacg acaagccgtg gcgcgattcc aacactttgg 1561 gagcccacat ctaccggccc agcaagcagg cagatagcga caactacggc ggcgatctgg 1621 atgccattgt gaataccaag cgcttcgtgc cggacaagca gttctccggc gcttcgcggg 1681 atgcggccgc cggccagagg agcggacccg tcgagttcga gaaggaggag gatcccttcg 1741 ggctcgatca gttcttgaac atggccaaaa aggcgcccaa gcgagccgag gagaagagca 1801 acgagcgcag cagccattcg gatcgcaagc gcagcaggcg cgattagaca aaagctttag 1861 ctatcatcat ctcatcatca tcatccaaat catcttcatc caacaaccaa acaaactttt 1921 tttaactact ccaaaaactt ggcgagaatt tcaataataa tcacaggatc ttgacataa