PREDICTED: Drosophila takahashii unc-4 (unc-4), transcript variant

LOCUS       XM_017140607            1000 bp    mRNA    linear   INV 09-DEC-2024
            X2, mRNA.
ACCESSION   XM_017140607
VERSION     XM_017140607.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017140607.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1000
                     /gene="unc-4"
                     /note="unc-4; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:108056698"
     CDS             47..901
                     /gene="unc-4"
                     /codon_start=1
                     /product="homeobox protein unc-4 isoform X2"
                     /protein_id="XP_016996096.1"
                     /db_xref="GeneID:108056698"
                     /translation="MVLETSEGDSKKFLTNNNNNNNNNSSASRNNNNHSPKENPEETT
                     PPGRSNHNHRSSITSSSTSVSGCGMPSEGLHPTAALQLYAAAAQLAPGGVRVPPWGPF
                     LQFGVPGVFGPNGPFLGRPRFDAAAGGGGHPNSAAAAAAATQMAAVNASNAFANLTGL
                     SAAALRNVSAAQTTAVAAVASTVATIQHRLMIGNRQSLPPAGPPSEGSNEDGGFPGDG
                     DDDSSAAKRRRSRTNFNSWQLEELERAFSASHYPDIFMREALAMRLDLKESRVAIGMV
                     PESTCQGA"
     misc_feature    728..>865
                     /gene="unc-4"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      
        1 tcagtgcaca aatagacctg cttgatggcc taaactacag accataatgg ttttggagac
       61 ctccgagggc gatagcaaaa agttcctgac caacaacaat aacaacaaca acaacaactc
      121 gagtgccagc cgaaacaaca acaatcatag tcccaaggag aatccggaag agacgactcc
      181 ccctggaagg agtaaccaca accataggag ttccatcact agctcctcca cttccgtttc
      241 cggttgcggc atgccctccg agggcctcca cccgacggcc gccctccagc tttatgccgc
      301 cgccgcccaa ctggcgcccg gcggcgttcg cgtcccgccc tggggtccct tcctccagtt
      361 cggcgttccc ggggtctttg gccccaacgg acccttcttg gggcgccccc gcttcgatgc
      421 cgccgccggt ggcggtggtc acccgaattc cgccgccgcc gctgctgccg ccacccaaat
      481 ggcggcggta aatgccagca atgcattcgc caacctaacg ggactgagtg cggcggcatt
      541 gcggaacgtg agtgccgccc aaacgaccgc cgtggccgcc gtcgcaagta cagtggccac
      601 catccagcac cgactgatga tcggcaaccg gcagagtttg ccgccggcgg gaccgcccag
      661 cgaaggatcg aatgaggatg gcggctttcc cggcgacggc gacgacgaca gcagcgcggc
      721 caagcggcga aggtcgcgga ccaacttcaa ctcctggcaa ctggaggagc tggagagggc
      781 cttctccgcc agtcactatc cggatatctt catgcgggag gccctggcca tgcggctgga
      841 cctcaaggag tcgcgagttg cgataggtat ggttccagaa tcgacgtgcc aaggtgcgta
      901 agcgcgagca cacgaagaag ggacccggtc gccccgccca caacgcccag ccgcagacct
      961 gcagcggcga acccattccg cccaacgagc tcaaggccaa