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LOCUS XM_017140605 4523 bp mRNA linear INV 09-DEC-2024 at 16D (Socs16D), mRNA. ACCESSION XM_017140605 VERSION XM_017140605.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 18, 2021 this sequence version replaced XM_017140605.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4523 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4523 /gene="Socs16D" /note="Suppressor of Cytokine Signaling at 16D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056697" CDS 205..3192 /gene="Socs16D" /codon_start=1 /product="uncharacterized protein Socs16D" /protein_id="XP_016996094.2" /db_xref="GeneID:108056697" /translation="MESSIKLKDSNSNCSSNSNGNVGGGGGAGVAGNGGGGGGVCVSS ICSSDSFSIMPPPHHELVSANSIELNAAASLSDDSGVPLTTNSSISSGDSYRLGMCKF EIEMVESDGEVSQFDSLDNCSEGGMSAENFNTLKKGPLAPIDPPPEFQDSPQTTLVRS ISKNIVNSLRRWTSSQSSFEHLKDDAATMVTTSVVLPAEEQHPHPSQQELVLQLDALD GQALGQMSLKESYAINKHLYSSDSILNSHTDNIYDEPNNIVSSSLGNSVDLLEEEQSE ASSCSPLPSPPPPVSLVKIKQTLCPYYQDHTRYFKAIPTEQDNIASAKAAAAQQRFNS AGLSEIHDYDLYYGARRQPADNSSLQRRQASLYSPLGHTSHCHYHGNNGSHPHHHHHH HHHHHQPGYGYSHGQRPNSRNSLNSRLSSSHNSLNVSSANKPDDSIFITQAMSHDALF TREISDFYNVPIDSDIYAFPVDMIEQQQQQEQQKPTYHKASRRNKRNKRKQRYGGSET SDGDGEKSKHGKYRTPVGISQVVSESEPLHMTLDEVKQFYHTLYSDAGDRSGGGGKPT VKPMVKSSNETIWSVSTNTTTTTARTRSSVGTTRGAGGNPPGGTGGASSDGGNPGGNK YLSKQTKHNLDNDKLNNNNNNNNQQLEKPPTEQHNSNANHNQQLQQPPNNKHVLHSEK KSQFTLNLKQRFCSIFRFRRSNHSRCRGSTAGSLVNNANAGAATVPLIPPTAAHVITS APGAAGQTQLATEVALITAEADEPNADLRKKFQSRALPPLPKKAAAYAIEAVKSEPEE LKANVIQEPRALQFTSSIEKVKDYGWYWGPLSSEAAEKVLSSEPDGSFIVRDSSDDHY IFSLSFKLNNCVRHVRIEQDQGTFSFGSYAKFKSQTITEFIEKAVEHSRSGRYLFFLH RRPEHGPMRVQLTNPVSRFKHVQSLQHMCRFVILKAVIRKDLIQTLPLPRRLLDYLNY KHCYSEQVESDSSHSQISGDGTM" misc_feature 2641..2937 /gene="Socs16D" /note="Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; Region: SH2_SOCS7; cd10388" /db_xref="CDD:198251" misc_feature order(2695..2697,2749..2751,2755..2757,2779..2781, 2818..2820) /gene="Socs16D" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198251" misc_feature order(2848..2850,2854..2856,2902..2904) /gene="Socs16D" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198251" misc_feature 3004..3153 /gene="Socs16D" /note="SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS7 is important in the functioning of neuronal...; Region: SOCS_SOCS7; cd03741" /db_xref="CDD:239710" misc_feature order(3007..3024,3040..3042,3064..3066,3082..3084, 3097..3099) /gene="Socs16D" /note="putative elongin B/C interaction [polypeptide binding]; other site" /db_xref="CDD:239710" polyA_site 4523 /gene="Socs16D" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttgtttttt ttagtttcga aaaaaaaatg cgcagcggtg cagcaattgc aatgcgtgca 61 atcaatcccg ttaacaatca agtgctgagc gcgcagagca gccaatagga atcagatcgg 121 aattgcaatt ggaatcagga tcgggagtcg cgaatctaat cggaggaagc tgttgcctct 181 cacctgagtc tctggccccc gaaaatggag tcgtccatta agcttaagga cagcaactcg 241 aactgcagct ccaactcaaa tggcaatgtg ggcggtggcg gtggtgcagg ggtggcggga 301 aacggaggag gaggaggagg cgtttgcgtg tccagcatct gcagcagcga cagcttcagc 361 atcatgccgc cgccgcatca cgaactggtc agcgccaaca gcatcgagct gaatgcggcg 421 gcctcgttga gcgacgacag cggtgttccg ctgaccacca acagctccat ttccagtggc 481 gactcctacc gcctgggcat gtgcaagttc gagattgaga tggtcgagag cgacggcgag 541 gtttcgcagt tcgattcgct ggacaattgc tccgagggcg gtatgagtgc cgagaacttc 601 aatacgctga agaagggacc cctggcgccc attgatccgc cacccgaatt ccaggactca 661 cctcaaacga ctctagtgcg ctccatctcg aagaacattg tgaacagcct gcgtcgctgg 721 acctcctcgc aatcgtcgtt cgagcatctc aaggacgatg ccgccaccat ggtgacaaca 781 tcggttgtcc tgcctgccga ggagcagcat ccccatccca gccagcagga gttggtcctg 841 cagctggatg ccttggatgg ccaggctctt ggacagatga gcttgaaaga gtcctatgcg 901 atcaacaagc atttgtactc gagcgactcc atactgaaca gccatacgga caacatttac 961 gacgagccca acaatatagt aagcagttcg ctgggcaaca gcgtcgatct gctggaggaa 1021 gagcagtcgg aggccagcag ctgttcgcct ttgccctcgc caccgccgcc cgtttccctg 1081 gtgaagatca agcagacgct gtgtccgtac taccaggatc acacgcgcta cttcaaggcc 1141 atacccacgg agcaggacaa catagcgagt gccaaggcgg cggcggccca gcagagattc 1201 aatagcgccg ggctctcgga gattcacgac tatgatttgt actatggagc caggcgacag 1261 ccggcggaca acagcagtct gcagcgacga caggcttcgc tgtacagtcc actgggtcac 1321 accagccatt gtcactatca tgggaataat ggctctcatc cgcatcatca tcatcatcac 1381 caccatcatc accaccagcc gggctatggt tatagccacg ggcagcgtcc caactcgcgc 1441 aactcgctga acagccgact gagcagctcg cacaactcac tgaatgtctc gtcggccaac 1501 aaaccggatg actccatttt catcacccag gccatgtcgc atgatgcgct cttcacgcgc 1561 gagatctctg acttttacaa cgtgcccatc gactcggata tctacgcctt tcccgtggac 1621 atgatcgagc agcagcagca gcaggagcag cagaagccca cgtatcacaa ggcgagcagg 1681 cggaacaaga ggaacaagcg caagcagcgc tacggaggat cagagaccag cgatggtgat 1741 ggtgagaaga gcaagcatgg caagtataga accccagtgg gcattagcca ggtggtcagc 1801 gaatcggagc cactgcacat gaccctcgac gaggtaaagc agttctacca caccctctac 1861 tcggatgcgg gcgacagaag cggcggagga ggaaagccca cggttaagcc gatggtcaag 1921 tcgagcaacg agaccatttg gagtgtgtcc acgaatacca ccaccacaac ggcgagaacg 1981 cggagcagtg tgggcaccac aaggggagca ggaggtaatc cacctggagg aactggagga 2041 gccagcagtg atggaggcaa tcctggtggc aacaagtact tgagcaagca gaccaagcac 2101 aatctggaca acgacaagct caacaacaac aataacaaca acaaccagca gctggagaag 2161 ccgccaacgg agcagcacaa cagcaatgca aatcacaacc agcagctgca acaaccgccg 2221 aacaacaagc acgtcctgca ctcggagaaa aagtcacagt tcacgctgaa cctaaagcag 2281 cgcttctgca gcatctttcg cttccggcgg agcaatcaca gtcgctgccg aggatccaca 2341 gctggcagtc tggtgaataa tgcgaatgca ggagcggcca cggtgccgct gataccgccc 2401 acggcagccc acgtgataac cagcgctccg ggggcagcgg gccaaacaca gctggccacc 2461 gaagtggcgc tcattacggc ggaggcggac gaaccgaatg ccgatctgcg caagaagttc 2521 cagtcacgtg ccctgccacc actaccaaag aaggctgctg cctatgccat tgaagccgtt 2581 aaatcggaac ccgaggagct gaaggcgaac gtgatccagg agccgcgggc actgcagttc 2641 acctccagca ttgagaaagt caaagactac ggctggtact ggggtcccct gtccagcgag 2701 gcggccgaga aggtgctctc cagcgaaccg gacggctcct ttatagtgcg cgacagctcc 2761 gacgaccact acatcttctc tctgagcttc aagctgaaca actgcgtgcg ccatgtgcgc 2821 atcgagcagg atcagggaac cttctccttt ggctcgtatg ccaagttcaa gtctcaaacc 2881 atcaccgagt tcatcgagaa ggccgtcgag cattcgcgga gcggcagata tctattcttt 2941 ctgcatcgtc gcccagagca cggaccaatg cgtgtgcaat taaccaatcc agtatctaga 3001 tttaagcatg tacaaagctt gcagcacatg tgcagatttg ttatactaaa ggcggttata 3061 cgaaaggatc taatacagac attgccatta ccgagaagac ttctagacta tcttaactat 3121 aagcactgct actccgagca ggtggagagc gacagttccc attcgcagat atctggcgat 3181 ggaacgatgt aagtggaggg ataatgaaca gagacgattc gcttgtgaca acaaaacgta 3241 aacgaaagca acagaaatta ttaccttaaa taagtagtag aatttaacga aacattaaac 3301 agcagtaaca aagcaaacaa acaaccgtta aacgttctgt ataacaagaa cagcaaacaa 3361 aaaaaagaag agatgaaaaa aaaaacacca aacataaaac aaaagttaaa tgagtaagca 3421 aagcgaggaa attgttagtt ttgctaaaaa aaaaacgaaa aacgaaaaac caaggaaaca 3481 aaattcaaaa ctctgtttat tgatcatttt tttgtactcg gtgctatact ataaatatta 3541 actatttaat gaaaggaacg cagaagcaga aaacagaata tgacgattat ataaattaat 3601 tatgcgtagt caagtaaacg aatcacagaa ttgtacataa atatgtttga gagccagtaa 3661 tccaagtaat cccacccaca accagaaacc agaaaccccc tcccctttgg gcacgaatca 3721 gaaagagaaa gagaacgaga atgagagtgt gaggtgttga tgttttgtgt aatcaattaa 3781 ttacttttat gcttgccttt tagctgtgat ttaaataagt cgtcgaatgt taattggaag 3841 acgatttgca gtttgatatt tgatatttaa tatttaatag atttgatata gcctagcccc 3901 catatagttg aggttctgtt atgcacactc gatctgaaat ctgaaactga tagcatttcg 3961 aagctgctca atcatcacga cgcctgtgcc caaaggtcct ttcaagggaa agggatcgat 4021 catgaaacaa ccattattgt acttagttta atccatgtca tgatacacag acacacagat 4081 gaaaaccaac taccaataat tgtatttaga tttatttgaa ttgttaacta atttttgttt 4141 tcggctttgt tatttatgtt ttaagctcaa ctcctttgta cactattgcg tatggtttgt 4201 ttttagtttg tatttatttc tttgtatcct aaaactacca tccctcaatc ctccaacaca 4261 atccaatcca attcctatcc aaaatccaag ccaaaatcga gtccgtcttg gactctgctc 4321 ctctttaaaa aacattaaac aaacaatatt tgtctatgga aataaaataa acgaatgaaa 4381 tgacgataga aaaaccaaaa gcaatgcaga taaagatgat gcgaggcggg ggagaggaga 4441 acgaacgaac ggtcacagca aaagagcaaa acaacaaagg caatataaag aacattttta 4501 ataataaaaa ttaaacaaag gaa