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LOCUS XM_017140598 2872 bp mRNA linear INV 09-DEC-2024 (par-6), mRNA. ACCESSION XM_017140598 VERSION XM_017140598.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140598.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2872 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2872 /gene="par-6" /note="partitioning defective protein 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056693" CDS 280..1320 /gene="par-6" /codon_start=1 /product="partitioning defective protein 6" /protein_id="XP_016996087.2" /db_xref="GeneID:108056693" /translation="MSKNKINTTSGVAASETNLIEVKSKFDAEFRRWSFKRNEAEQSF DKFAALIEQLHMLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQRKD DLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIIDVDIVPETHRR VRLLKHGSDKPLGFYIRDGTSVRVTSSGLEKQPGIFISRLVPGGLAESTGLLAVNDEV IEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQRTLTSTHRGSFSRNSQLSSGSH HTNNTNTSDEIEHDDQDDIVDLTGVTLDESPTSTAAAAPPLSSSPSSHQQAASNASTI MASDVKDGVLHL" misc_feature 337..582 /gene="par-6" /note="The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions...; Region: PB1_Par6; cd06403" /db_xref="CDD:99724" misc_feature order(340..342,346..348,367..375,379..381,427..429, 439..441,562..564) /gene="par-6" /note="PB1 interaction surface [polypeptide binding]; other site" /db_xref="CDD:99724" misc_feature 754..1032 /gene="par-6" /note="PDZ domain of partitioning defective 6 (Par6), Drosophila Rho GTPase-activating protein 100F (RhoGAP100F), and related domains; Region: PDZ_Par6-like; cd06718" /db_xref="CDD:467202" misc_feature order(790..810,871..873,880..882,970..972,982..984, 991..996) /gene="par-6" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467202" polyA_site 2872 /gene="par-6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttttcgcg gccaccacta attaatacca cacaaaatac cacacctcca tttcttttat 61 ttaattagtt ttaatttaga tttctaactc taatttaaat taccccggtg cactgcggtt 121 tggttcggtt tcggttcgca tcggttcgta tcgggcgatt cggttcgatt tcgatatcga 181 tcctgaagat cagatcagag gcaactgtgt tttgtgttgt gtgtggagga gaaaactgtg 241 tgcacttttg atcggatatt tggctttgga ttggagaaaa tgtcgaagaa caagataaac 301 acaacgtccg gcgtggcggc cagcgaaacg aatctgatcg aggtgaagtc gaagtttgat 361 gcggagttcc ggcggtggag cttcaaacgg aacgaggcgg agcagagctt cgacaaattt 421 gcggccctca tcgagcagct gcacatgctg accaacatcc agtttctcat actctacatc 481 gatccgcggg acaacgatct tttgccgatc aacaacgatg ataacttcgg cagggcccta 541 aaaacagctc gtcctctttt gcgggtcatc gttcagcgga aagacgacct gaacgagtac 601 tctggctttg ggacgatgaa gccgcggaac ctcatcggca gcatactgat gggccacacg 661 cccgtgaaga ccaaggcgcc ctcgatatcc ataccgcacg acttccgcca ggtgtcggcc 721 atcatagacg tggacattgt gccggagacg cacaggcggg tgcgtttgct gaagcacggc 781 agcgacaagc cgctgggatt ctacatccgc gacggcacct cggtgcgggt gacgtccagt 841 gggctggaga agcagccggg catctttata tcccgtttag tgccgggtgg cctggccgaa 901 agcactgggc tgctggccgt caacgatgag gtgatcgagg tcaatggcat cgaggtggcc 961 ggcaagactc tggaccaggt caccgatatg atggtggcca atagctccaa tctgatcatc 1021 accgtcaagc cggccaatca gcgcacgctg acgtccacgc atcgcggctc cttctcgcgg 1081 aacagccagc tgtcgagtgg gtcacatcac acgaataata ccaacacctc cgatgaaatc 1141 gagcacgacg atcaggatga tatcgtggat ctgacgggcg tcacactcga cgagagtccc 1201 acgtccacag ccgccgccgc gccaccgtta agctcatcgc cttcgtcaca ccagcaggca 1261 gcctccaatg cgtccacgat aatggccagc gatgtcaagg atggagtgct gcatttgtag 1321 gatcgatcga gaggagatat atagcacacc cagcagcatc cagagaactc aagcaacgga 1381 aaaggcgaat tcacagcaga ggatttttag tttatcagac ttaacctttc cttaagatcg 1441 aataagttcg ttaaacgcaa gtcaattatt taaagttata caagttaggc cagctaatca 1501 ccgatcgatt atatatggct cacttactaa ggcaggattt ttgaagaaat atttgtaaaa 1561 tcactagaga tttcttcaaa attcccagtt atttagtagg tgagccatat ataagatgcg 1621 attatatgca taatcatacg actttacccc catacattcc atacgaaaca cacactcaaa 1681 gtcatattca tttgcacgtt tttgaatgca gtcccttgtt tttatctttt tccttggcat 1741 atatatatgt gtatttaaat ttgtaagatt tacgtcttgt tatttttttc ttgcttgttg 1801 cattagttta gagtgagacc gctgaggaga gaatgagata gagagagaga gcatcaaatg 1861 cagaaggcag agaaatttac ttagcctatt cgaattcaag aattccgaaa ctgaaaaggc 1921 aataattgta aacataatca ctagacatcg aattttaggt gaaatctttt ttttttatat 1981 agtttaaagc cacatttgat tggttacatt tttttttaca aaaacctcaa ttaagttttg 2041 cctaaatcta attataactt aataaattaa atttataacc aatcaaatgt ggctttaaat 2101 cgtatttaaa aaaaaaacga ttttacctaa aatctgatat ctaataatca cacatgcgag 2161 cacgaataat ttataaccaa aacattccat tttatgtact ttaccaagtc gaaacccaaa 2221 aaatgtacgg ttcttgattt gctagactcc tttttaattt tttttttggc attactcata 2281 atatttgttt ggtttatttt aaatattgta ctttttgtaa ttttaacttt tgtttttcgt 2341 aaatgtgtcc aatactcgta caagttgttt gttgtaattg tcatcattta gagttacgga 2401 gaaaaaagaa gaaaaacgag gagatgaagt taacaaaacg ataaagaaaa acaaacgaaa 2461 caccaacagc gccttcgcct tcaagagagc aattcgatac tttttatata tatacaagag 2521 aatatataca ctaatacgat ctatatgttg aatacgtatc cccgtagacc taattgaagt 2581 ctgtatacgc tttagtcaaa tcgagaaaag gccgatctgc ccgacttgaa gttaacaata 2641 tccgtattta tgagacagca gcgaatctga aactatatcc cctcatcatc accattccac 2701 atatccttat actgaaccca agcaatctga atccccgatt cccaagcata cgcatatacc 2761 atatatataa caactgaaaa agaccgaaaa gcgaaagatc acgaaagaaa aacttatatt 2821 ttgatgtatg tattattatt ttttaataaa cctaagtaaa cttgtaaccg ag