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LOCUS XM_017140595 5091 bp mRNA linear INV 09-DEC-2024 X7, mRNA. ACCESSION XM_017140595 VERSION XM_017140595.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140595.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5091 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5091 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056691" CDS 252..4415 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X4" /protein_id="XP_016996084.2" /db_xref="GeneID:108056691" /translation="MALSKTIKSKAGAKDEQNELVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRN MERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYRS AQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPIP GQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQQ QQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGPG NDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYSL DSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIEL RTAAGGHRK" misc_feature <3453..3806 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5091 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagatcagtt gtgaatctgg caacaaacca tttggctggg gctgctgctc caaaacaata 61 aaaaaacaaa aattccaaca aaaataacaa aaacaacgcg atttcaaacc gattcgatcc 121 tctcttcggc tccaaatgtg cgcgtctgtg tgagtgaaaa ataaacgagg aggttaaaca 181 taaacaacgt caacgagaag aaatcgaaat atattcgaat atatttatgt gaaaaatctg 241 aaaaaaacgc tatggcttta agcaaaacca tcaaatcaaa agctggcgcc aaagacgaac 301 aaaacgaact ggtcgaattc gagcccaaag atgacgagga gagcaacgag gccacggcaa 361 gcaattgcga tacagaagct ataaccaaag aagaggagtg gataacgaag cgcaagaccg 421 aactcacaac taccagacag atcgaaacga gagtaaagcg aaatgtgaag ctgcaggatg 481 gcaaggtgat cgaggattcg ggacccattg tgtccacaaa cacgaccgag gacaccgata 541 agcaggagac ggaaaccact gagaaacgcg accttgacct gcccgatgac cttgatggca 601 atgcccagct gatcgatgtg gccgccctgc aggcgggcgc cgtaaatgaa acgcagttgg 661 cccaaattca agaggtcttc ggaccggcgg atggggctgg gaagctggtc aagcggatgg 721 ttccacgtcc ggtggacgga ctagtgcgtc agacggacga caagcgggta atatcgcacg 781 aggagatcaa ggactaccac gaaacggagg acgtcaagca tcacggcgac tttactgatc 841 agacctacgt gaacgcagtt cgcgacggag tcgaggacct cgaggccgtc ctctgttcgc 901 cggagagcca gcgacagttg gtgcccctcg gaccgcaggt ggtggccaat cggagcaagt 961 cccgcaagac catcgactcg gaggacacgc agaagcgttg cctggcccag gaggacggca 1021 ctttggtcac cgagagtcgg cgcaccaccg agcacgagct aatcctcgac gacgagctgc 1081 ccgatcttcc agctgcgaac tccgatgaac gcggactgca gctccaggtg ggcgagcagg 1141 tgaccaccac ggcggccaat cagcggttct tccgccagcg ggacgagcag catgtggacg 1201 tgctagccaa cgggcggctc caatccaccg agatgcgcta cgccgccgag accacgcaga 1261 tggacaagga cggacccgcc gatctggagc gaccgggcga ctgggacagc ctctccgacc 1321 ggatgcgcaa gcttcgccgc tcccagcagc agcaacagaa ggaggttgcc cttttggcgg 1381 atcgcaagga tgcgctgacc aagcgacccc tggacttcga tcgcgaggag gagacgcgca 1441 agggcgagac gatgaagtgg ctggagtcgc actttggcag cgagtccacc gcctccaacg 1501 attcccgcga cgacgaggcc gatgcggaag ccgtggagcc gaccaagaag agctacttca 1561 atgtgacaat caagtcgcag agccagccgc aggcgcatgc gcagcacatc catgcccaat 1621 cgcacctggc cacccagcag catgcgcatc cgcagcacat ctcccatggc caccacccgc 1681 agacgctgcc caggagcgcc gaaagggaga gggagaggga gagggaaaga gaaagggaac 1741 gccatcccac agccgccacg ctggagagga agccgccggg caactcggcc ggcggtcgct 1801 ccaagtactt ccagggcatc tcgaactggt cggaacgcaa ggatccccag ggatccccgg 1861 cggtcaatca cttctcgtcg caggcctttc gcgacgatct gcaggagacc attcgaagga 1921 atgggctgaa gaagaaggtc agcggcccgc ctggttccag tcagggatcc ctggctttgg 1981 cccaggagca gcagcagcag cccaaggaca gctatgtcag ccgcgaggat atactgcagc 2041 agaagcgcca gagtctctcc tcacagttcc tggcccgctc gatgcgtggc tctcgcgatg 2101 ccctggacga tttggaggcc ataccgggac caggacctgg accgggtcca tctataaact 2161 caccgcgtgg ccccgaggaa ccgtcgcata agagagtagc ctacggtcat cgcagcggcg 2221 ccatcaacgg gcatgcggta aacggaggag cgatgaccaa tggacgtggc aagagctatg 2281 agccagctgc tcagcctcct cctcagctgc ccaccgcagt tccagttgga gttctagagt 2341 acagcggcaa tggcggtggc agccagctga gcctcaatcc gcgacccacc gtcccgcagc 2401 gacgacgtgc catcgaaaag aagctgggcg agcacagcca cagccacagc caccactcat 2461 catcccacac atcgcatacg ggcggtcatc tgccggcagt caagtcgcag gctccgctgc 2521 cctcgcaggt cagccagctg gaaccgccgc cggactactc gccgccgccc aggagtcgca 2581 gtcgctcgtc ctcgccgcag gtggactacc tgatgaccag agatgtgccc gccagcacga 2641 tgaccctcag ccggaagcag cagcagcgca cccgattcgc acccacatcc agctatccgc 2701 cggcaaccgg aggggcaggc aacctccggc caccgggcgc cacctcggcc tccacctcga 2761 acctgtcggc catgagcgga ggtcacggcg gaggcagtac ctccaagtcc agccgcatgg 2821 gccaggcgat tggcaattcg ctgcggaagc tggtcagcaa aatccgttcg gccagtgccg 2881 agcgaaagtt tcgaatgaaa tcggcggcca gcaagtcgcg cgaacagtcg cccagtccgg 2941 gacacgatcc ccggggtgga ggaggaggag gagtgggtcc accggtgacc acctaccagc 3001 agtacaatgt gatcgatggg cacatcggta gccacgattc cgaggactcc aatagcgata 3061 atcagcggcg cagggagagg gagcgagaaa gggagcgcga gcgggaaagg gagcgggaaa 3121 gggaaagaga tcgagatcgg gaacgggaaa gggagcctcc caagcaggag aaccaatcgc 3181 gtttgaattt caagcgcgcc gagtccgcgg atccccagct gcagcacctg gagcaccagg 3241 ccatcagtcc caggcagcgg tactacctgg gcgaagatcc ctactccagc acgctctacg 3301 gcaaggagaa tctctacgag cgacggccac gccagcgcaa catggagcgt ccggacgagc 3361 gaatggagcg cttggagcga gaggatgact actacgagtc gcgggctccg ccgccggtga 3421 cggctgccca cacgttgggt cgctaccaga agcacggcca gcgcttcagt ggctctacgc 3481 ccaatctgca ccagcagcag caggactacc gctcggccca gacgctgccg cgcaagttgc 3541 acgagcagcg cagccagcag agattcggca acgggatgga gaagcagtcg tctggtaggg 3601 gcaactacct gccggttgct cctggaccgc agcagcaaag ggggatgaac cagaatccca 3661 ttccaagtcc cagcagcaat ccgattcccg gccagatgca gccgcaggga ccggcgaaac 3721 cggccaggac ctacgccaag gtcctgaatc gcagcaagag ctttaatgtg cacgggatga 3781 acggaagcaa cgaccccagt cccatctaca tcgagaagct cacgcggaac aactaccaac 3841 agccacgcca gcagctgcaa cagcagcagg agccgaactt tggctatggt ttgggccagg 3901 gacccaatgc caactacaag tccaatccgc atctcttctc cggcaaggac aactcgctga 3961 agggcggcct gaagagcccc tcgattgtga atctcataag tcgcagccaa aaggatctca 4021 cgaagatcgg gccgggcaac gatgacgacg agatcgtcgg cggcagctat cagcaggagc 4081 aggataagaa gcagctgtat ttgcgtggcc tgcatcaaca ggcaccggat ctttaccgcg 4141 tgatacatgg cgacgaggag tacggtggcg gtggctccag gaagtatccg ctgcaggcca 4201 agtattcgct ggactcgcgt tcgccgccct ccgtggagct caacaaggat accgcgagca 4261 ttgtgcggcg cagcagcgag gtggaccatc agcagcagca gcagcatcac caccagcagc 4321 accaccacca tcacatccag caacagaatc tgcgacgtgg ctcgggagcc accatcattg 4381 agctgcgcac cgccgccggt ggccatcgca agtaattcgc cattatccta ccaagaccat 4441 aagatcctac actcctatat tttgaaacca tagtcgagct ttccttgtgt ctagtgttta 4501 aattcctcat ttggaacttt ttcaattttt aaaatcaaaa tacattataa aattcactaa 4561 gaacctaaaa aatagcattg ggaaagctcg actatttaat tccctaccat attccctaac 4621 tatttgctaa caaatgctcg gccgtgggct ttagtttcat ttgacaagca gcaaataaaa 4681 acaaaaaggc caatcaacca attgatacca attgttaaat gggtaatgaa aaagctataa 4741 agttgatggt aaatcgataa cgaaatacaa aagtaatgtt aaaaaaatat aaaaatcaaa 4801 agataagaaa agaaaatcta aaagcaacgt ggaagccatt cccactgtcc tgccacgcct 4861 cttccaatcg taatttgata atacctacta taatgcctac atacgcctaa ttacattgtc 4921 tattttatca tttttgtttt tttttttact actaatatta acgtttgttg tatagatacc 4981 gttaaatcga taaactaact aaaataacta atattaattc gatattattg tacaattttg 5041 attaataaac aaattgcaat taaaattaaa ataaagtgcc aaaataaaca a