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LOCUS XM_017140594 5078 bp mRNA linear INV 09-DEC-2024 X6, mRNA. ACCESSION XM_017140594 VERSION XM_017140594.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140594.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5078 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5078 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056691" CDS 236..4402 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X3" /protein_id="XP_016996083.2" /db_xref="GeneID:108056691" /translation="MALSKTIKSKAGAKDEQNELVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRS NMERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYR SAQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPI PGQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQ QQQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGP GNDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYS LDSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIE LRTAAGGHRK" misc_feature <3440..3793 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5078 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgtgaatct ggcaacaaac catttggctg gggctgctgc tccaaaacaa taaaaaaaca 61 aaaattccaa caaaaataac aaaaacaacg cgatttcaaa ccgattcgat cctctcttcg 121 gctccaaatg tgcgcgtctg taaaataaac gaggaggtta aacataaaca acgtcaacga 181 gaagaaatcg aaatatattc gaatatattt atgtgaaaaa tctgaaaaaa acgctatggc 241 tttaagcaaa accatcaaat caaaagctgg cgccaaagac gaacaaaacg aactggtcga 301 attcgagccc aaagatgacg aggagagcaa cgaggccacg gcaagcaatt gcgatacaga 361 agctataacc aaagaagagg agtggataac gaagcgcaag accgaactca caactaccag 421 acagatcgaa acgagagtaa agcgaaatgt gaagctgcag gatggcaagg tgatcgagga 481 ttcgggaccc attgtgtcca caaacacgac cgaggacacc gataagcagg agacggaaac 541 cactgagaaa cgcgaccttg acctgcccga tgaccttgat ggcaatgccc agctgatcga 601 tgtggccgcc ctgcaggcgg gcgccgtaaa tgaaacgcag ttggcccaaa ttcaagaggt 661 cttcggaccg gcggatgggg ctgggaagct ggtcaagcgg atggttccac gtccggtgga 721 cggactagtg cgtcagacgg acgacaagcg ggtaatatcg cacgaggaga tcaaggacta 781 ccacgaaacg gaggacgtca agcatcacgg cgactttact gatcagacct acgtgaacgc 841 agttcgcgac ggagtcgagg acctcgaggc cgtcctctgt tcgccggaga gccagcgaca 901 gttggtgccc ctcggaccgc aggtggtggc caatcggagc aagtcccgca agaccatcga 961 ctcggaggac acgcagaagc gttgcctggc ccaggaggac ggcactttgg tcaccgagag 1021 tcggcgcacc accgagcacg agctaatcct cgacgacgag ctgcccgatc ttccagctgc 1081 gaactccgat gaacgcggac tgcagctcca ggtgggcgag caggtgacca ccacggcggc 1141 caatcagcgg ttcttccgcc agcgggacga gcagcatgtg gacgtgctag ccaacgggcg 1201 gctccaatcc accgagatgc gctacgccgc cgagaccacg cagatggaca aggacggacc 1261 cgccgatctg gagcgaccgg gcgactggga cagcctctcc gaccggatgc gcaagcttcg 1321 ccgctcccag cagcagcaac agaaggaggt tgcccttttg gcggatcgca aggatgcgct 1381 gaccaagcga cccctggact tcgatcgcga ggaggagacg cgcaagggcg agacgatgaa 1441 gtggctggag tcgcactttg gcagcgagtc caccgcctcc aacgattccc gcgacgacga 1501 ggccgatgcg gaagccgtgg agccgaccaa gaagagctac ttcaatgtga caatcaagtc 1561 gcagagccag ccgcaggcgc atgcgcagca catccatgcc caatcgcacc tggccaccca 1621 gcagcatgcg catccgcagc acatctccca tggccaccac ccgcagacgc tgcccaggag 1681 cgccgaaagg gagagggaga gggagaggga aagagaaagg gaacgccatc ccacagccgc 1741 cacgctggag aggaagccgc cgggcaactc ggccggcggt cgctccaagt acttccaggg 1801 catctcgaac tggtcggaac gcaaggatcc ccagggatcc ccggcggtca atcacttctc 1861 gtcgcaggcc tttcgcgacg atctgcagga gaccattcga aggaatgggc tgaagaagaa 1921 ggtcagcggc ccgcctggtt ccagtcaggg atccctggct ttggcccagg agcagcagca 1981 gcagcccaag gacagctatg tcagccgcga ggatatactg cagcagaagc gccagagtct 2041 ctcctcacag ttcctggccc gctcgatgcg tggctctcgc gatgccctgg acgatttgga 2101 ggccataccg ggaccaggac ctggaccggg tccatctata aactcaccgc gtggccccga 2161 ggaaccgtcg cataagagag tagcctacgg tcatcgcagc ggcgccatca acgggcatgc 2221 ggtaaacgga ggagcgatga ccaatggacg tggcaagagc tatgagccag ctgctcagcc 2281 tcctcctcag ctgcccaccg cagttccagt tggagttcta gagtacagcg gcaatggcgg 2341 tggcagccag ctgagcctca atccgcgacc caccgtcccg cagcgacgac gtgccatcga 2401 aaagaagctg ggcgagcaca gccacagcca cagccaccac tcatcatccc acacatcgca 2461 tacgggcggt catctgccgg cagtcaagtc gcaggctccg ctgccctcgc aggtcagcca 2521 gctggaaccg ccgccggact actcgccgcc gcccaggagt cgcagtcgct cgtcctcgcc 2581 gcaggtggac tacctgatga ccagagatgt gcccgccagc acgatgaccc tcagccggaa 2641 gcagcagcag cgcacccgat tcgcacccac atccagctat ccgccggcaa ccggaggggc 2701 aggcaacctc cggccaccgg gcgccacctc ggcctccacc tcgaacctgt cggccatgag 2761 cggaggtcac ggcggaggca gtacctccaa gtccagccgc atgggccagg cgattggcaa 2821 ttcgctgcgg aagctggtca gcaaaatccg ttcggccagt gccgagcgaa agtttcgaat 2881 gaaatcggcg gccagcaagt cgcgcgaaca gtcgcccagt ccgggacacg atccccgggg 2941 tggaggagga ggaggagtgg gtccaccggt gaccacctac cagcagtaca atgtgatcga 3001 tgggcacatc ggtagccacg attccgagga ctccaatagc gataatcagc ggcgcaggga 3061 gagggagcga gaaagggagc gcgagcggga aagggagcgg gaaagggaaa gagatcgaga 3121 tcgggaacgg gaaagggagc ctcccaagca ggagaaccaa tcgcgtttga atttcaagcg 3181 cgccgagtcc gcggatcccc agctgcagca cctggagcac caggccatca gtcccaggca 3241 gcggtactac ctgggcgaag atccctactc cagcacgctc tacggcaagg agaatctcta 3301 cgagcgacgg ccacgccagc gcagcaacat ggagcgtccg gacgagcgaa tggagcgctt 3361 ggagcgagag gatgactact acgagtcgcg ggctccgccg ccggtgacgg ctgcccacac 3421 gttgggtcgc taccagaagc acggccagcg cttcagtggc tctacgccca atctgcacca 3481 gcagcagcag gactaccgct cggcccagac gctgccgcgc aagttgcacg agcagcgcag 3541 ccagcagaga ttcggcaacg ggatggagaa gcagtcgtct ggtaggggca actacctgcc 3601 ggttgctcct ggaccgcagc agcaaagggg gatgaaccag aatcccattc caagtcccag 3661 cagcaatccg attcccggcc agatgcagcc gcagggaccg gcgaaaccgg ccaggaccta 3721 cgccaaggtc ctgaatcgca gcaagagctt taatgtgcac gggatgaacg gaagcaacga 3781 ccccagtccc atctacatcg agaagctcac gcggaacaac taccaacagc cacgccagca 3841 gctgcaacag cagcaggagc cgaactttgg ctatggtttg ggccagggac ccaatgccaa 3901 ctacaagtcc aatccgcatc tcttctccgg caaggacaac tcgctgaagg gcggcctgaa 3961 gagcccctcg attgtgaatc tcataagtcg cagccaaaag gatctcacga agatcgggcc 4021 gggcaacgat gacgacgaga tcgtcggcgg cagctatcag caggagcagg ataagaagca 4081 gctgtatttg cgtggcctgc atcaacaggc accggatctt taccgcgtga tacatggcga 4141 cgaggagtac ggtggcggtg gctccaggaa gtatccgctg caggccaagt attcgctgga 4201 ctcgcgttcg ccgccctccg tggagctcaa caaggatacc gcgagcattg tgcggcgcag 4261 cagcgaggtg gaccatcagc agcagcagca gcatcaccac cagcagcacc accaccatca 4321 catccagcaa cagaatctgc gacgtggctc gggagccacc atcattgagc tgcgcaccgc 4381 cgccggtggc catcgcaagt aattcgccat tatcctacca agaccataag atcctacact 4441 cctatatttt gaaaccatag tcgagctttc cttgtgtcta gtgtttaaat tcctcatttg 4501 gaactttttc aatttttaaa atcaaaatac attataaaat tcactaagaa cctaaaaaat 4561 agcattggga aagctcgact atttaattcc ctaccatatt ccctaactat ttgctaacaa 4621 atgctcggcc gtgggcttta gtttcatttg acaagcagca aataaaaaca aaaaggccaa 4681 tcaaccaatt gataccaatt gttaaatggg taatgaaaaa gctataaagt tgatggtaaa 4741 tcgataacga aatacaaaag taatgttaaa aaaatataaa aatcaaaaga taagaaaaga 4801 aaatctaaaa gcaacgtgga agccattccc actgtcctgc cacgcctctt ccaatcgtaa 4861 tttgataata cctactataa tgcctacata cgcctaatta cattgtctat tttatcattt 4921 ttgttttttt ttttactact aatattaacg tttgttgtat agataccgtt aaatcgataa 4981 actaactaaa ataactaata ttaattcgat attattgtac aattttgatt aataaacaaa 5041 ttgcaattaa aattaaaata aagtgccaaa ataaacaa