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LOCUS XM_017140592 5089 bp mRNA linear INV 09-DEC-2024 X5, mRNA. ACCESSION XM_017140592 VERSION XM_017140592.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140592.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5089 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5089 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056691" CDS 247..4413 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X3" /protein_id="XP_016996081.2" /db_xref="GeneID:108056691" /translation="MALSKTIKSKAGAKDEQNELVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRS NMERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYR SAQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPI PGQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQ QQQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGP GNDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYS LDSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIE LRTAAGGHRK" misc_feature <3451..3804 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5089 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agatcagttg tgaatctggc aacaaaccat ttggctgggg ctgctgctcc aaaacaataa 61 aaaaacaaaa attccaacaa aaataacaaa aacaacgcga tttcaaaccg attcgatcct 121 ctcttcggct ccaaatgtgc gcgtctgtgt gaaaaataaa cgaggaggtt aaacataaac 181 aacgtcaacg agaagaaatc gaaatatatt cgaatatatt tatgtgaaaa atctgaaaaa 241 aacgctatgg ctttaagcaa aaccatcaaa tcaaaagctg gcgccaaaga cgaacaaaac 301 gaactggtcg aattcgagcc caaagatgac gaggagagca acgaggccac ggcaagcaat 361 tgcgatacag aagctataac caaagaagag gagtggataa cgaagcgcaa gaccgaactc 421 acaactacca gacagatcga aacgagagta aagcgaaatg tgaagctgca ggatggcaag 481 gtgatcgagg attcgggacc cattgtgtcc acaaacacga ccgaggacac cgataagcag 541 gagacggaaa ccactgagaa acgcgacctt gacctgcccg atgaccttga tggcaatgcc 601 cagctgatcg atgtggccgc cctgcaggcg ggcgccgtaa atgaaacgca gttggcccaa 661 attcaagagg tcttcggacc ggcggatggg gctgggaagc tggtcaagcg gatggttcca 721 cgtccggtgg acggactagt gcgtcagacg gacgacaagc gggtaatatc gcacgaggag 781 atcaaggact accacgaaac ggaggacgtc aagcatcacg gcgactttac tgatcagacc 841 tacgtgaacg cagttcgcga cggagtcgag gacctcgagg ccgtcctctg ttcgccggag 901 agccagcgac agttggtgcc cctcggaccg caggtggtgg ccaatcggag caagtcccgc 961 aagaccatcg actcggagga cacgcagaag cgttgcctgg cccaggagga cggcactttg 1021 gtcaccgaga gtcggcgcac caccgagcac gagctaatcc tcgacgacga gctgcccgat 1081 cttccagctg cgaactccga tgaacgcgga ctgcagctcc aggtgggcga gcaggtgacc 1141 accacggcgg ccaatcagcg gttcttccgc cagcgggacg agcagcatgt ggacgtgcta 1201 gccaacgggc ggctccaatc caccgagatg cgctacgccg ccgagaccac gcagatggac 1261 aaggacggac ccgccgatct ggagcgaccg ggcgactggg acagcctctc cgaccggatg 1321 cgcaagcttc gccgctccca gcagcagcaa cagaaggagg ttgccctttt ggcggatcgc 1381 aaggatgcgc tgaccaagcg acccctggac ttcgatcgcg aggaggagac gcgcaagggc 1441 gagacgatga agtggctgga gtcgcacttt ggcagcgagt ccaccgcctc caacgattcc 1501 cgcgacgacg aggccgatgc ggaagccgtg gagccgacca agaagagcta cttcaatgtg 1561 acaatcaagt cgcagagcca gccgcaggcg catgcgcagc acatccatgc ccaatcgcac 1621 ctggccaccc agcagcatgc gcatccgcag cacatctccc atggccacca cccgcagacg 1681 ctgcccagga gcgccgaaag ggagagggag agggagaggg aaagagaaag ggaacgccat 1741 cccacagccg ccacgctgga gaggaagccg ccgggcaact cggccggcgg tcgctccaag 1801 tacttccagg gcatctcgaa ctggtcggaa cgcaaggatc cccagggatc cccggcggtc 1861 aatcacttct cgtcgcaggc ctttcgcgac gatctgcagg agaccattcg aaggaatggg 1921 ctgaagaaga aggtcagcgg cccgcctggt tccagtcagg gatccctggc tttggcccag 1981 gagcagcagc agcagcccaa ggacagctat gtcagccgcg aggatatact gcagcagaag 2041 cgccagagtc tctcctcaca gttcctggcc cgctcgatgc gtggctctcg cgatgccctg 2101 gacgatttgg aggccatacc gggaccagga cctggaccgg gtccatctat aaactcaccg 2161 cgtggccccg aggaaccgtc gcataagaga gtagcctacg gtcatcgcag cggcgccatc 2221 aacgggcatg cggtaaacgg aggagcgatg accaatggac gtggcaagag ctatgagcca 2281 gctgctcagc ctcctcctca gctgcccacc gcagttccag ttggagttct agagtacagc 2341 ggcaatggcg gtggcagcca gctgagcctc aatccgcgac ccaccgtccc gcagcgacga 2401 cgtgccatcg aaaagaagct gggcgagcac agccacagcc acagccacca ctcatcatcc 2461 cacacatcgc atacgggcgg tcatctgccg gcagtcaagt cgcaggctcc gctgccctcg 2521 caggtcagcc agctggaacc gccgccggac tactcgccgc cgcccaggag tcgcagtcgc 2581 tcgtcctcgc cgcaggtgga ctacctgatg accagagatg tgcccgccag cacgatgacc 2641 ctcagccgga agcagcagca gcgcacccga ttcgcaccca catccagcta tccgccggca 2701 accggagggg caggcaacct ccggccaccg ggcgccacct cggcctccac ctcgaacctg 2761 tcggccatga gcggaggtca cggcggaggc agtacctcca agtccagccg catgggccag 2821 gcgattggca attcgctgcg gaagctggtc agcaaaatcc gttcggccag tgccgagcga 2881 aagtttcgaa tgaaatcggc ggccagcaag tcgcgcgaac agtcgcccag tccgggacac 2941 gatccccggg gtggaggagg aggaggagtg ggtccaccgg tgaccaccta ccagcagtac 3001 aatgtgatcg atgggcacat cggtagccac gattccgagg actccaatag cgataatcag 3061 cggcgcaggg agagggagcg agaaagggag cgcgagcggg aaagggagcg ggaaagggaa 3121 agagatcgag atcgggaacg ggaaagggag cctcccaagc aggagaacca atcgcgtttg 3181 aatttcaagc gcgccgagtc cgcggatccc cagctgcagc acctggagca ccaggccatc 3241 agtcccaggc agcggtacta cctgggcgaa gatccctact ccagcacgct ctacggcaag 3301 gagaatctct acgagcgacg gccacgccag cgcagcaaca tggagcgtcc ggacgagcga 3361 atggagcgct tggagcgaga ggatgactac tacgagtcgc gggctccgcc gccggtgacg 3421 gctgcccaca cgttgggtcg ctaccagaag cacggccagc gcttcagtgg ctctacgccc 3481 aatctgcacc agcagcagca ggactaccgc tcggcccaga cgctgccgcg caagttgcac 3541 gagcagcgca gccagcagag attcggcaac gggatggaga agcagtcgtc tggtaggggc 3601 aactacctgc cggttgctcc tggaccgcag cagcaaaggg ggatgaacca gaatcccatt 3661 ccaagtccca gcagcaatcc gattcccggc cagatgcagc cgcagggacc ggcgaaaccg 3721 gccaggacct acgccaaggt cctgaatcgc agcaagagct ttaatgtgca cgggatgaac 3781 ggaagcaacg accccagtcc catctacatc gagaagctca cgcggaacaa ctaccaacag 3841 ccacgccagc agctgcaaca gcagcaggag ccgaactttg gctatggttt gggccaggga 3901 cccaatgcca actacaagtc caatccgcat ctcttctccg gcaaggacaa ctcgctgaag 3961 ggcggcctga agagcccctc gattgtgaat ctcataagtc gcagccaaaa ggatctcacg 4021 aagatcgggc cgggcaacga tgacgacgag atcgtcggcg gcagctatca gcaggagcag 4081 gataagaagc agctgtattt gcgtggcctg catcaacagg caccggatct ttaccgcgtg 4141 atacatggcg acgaggagta cggtggcggt ggctccagga agtatccgct gcaggccaag 4201 tattcgctgg actcgcgttc gccgccctcc gtggagctca acaaggatac cgcgagcatt 4261 gtgcggcgca gcagcgaggt ggaccatcag cagcagcagc agcatcacca ccagcagcac 4321 caccaccatc acatccagca acagaatctg cgacgtggct cgggagccac catcattgag 4381 ctgcgcaccg ccgccggtgg ccatcgcaag taattcgcca ttatcctacc aagaccataa 4441 gatcctacac tcctatattt tgaaaccata gtcgagcttt ccttgtgtct agtgtttaaa 4501 ttcctcattt ggaacttttt caatttttaa aatcaaaata cattataaaa ttcactaaga 4561 acctaaaaaa tagcattggg aaagctcgac tatttaattc cctaccatat tccctaacta 4621 tttgctaaca aatgctcggc cgtgggcttt agtttcattt gacaagcagc aaataaaaac 4681 aaaaaggcca atcaaccaat tgataccaat tgttaaatgg gtaatgaaaa agctataaag 4741 ttgatggtaa atcgataacg aaatacaaaa gtaatgttaa aaaaatataa aaatcaaaag 4801 ataagaaaag aaaatctaaa agcaacgtgg aagccattcc cactgtcctg ccacgcctct 4861 tccaatcgta atttgataat acctactata atgcctacat acgcctaatt acattgtcta 4921 ttttatcatt tttgtttttt tttttactac taatattaac gtttgttgta tagataccgt 4981 taaatcgata aactaactaa aataactaat attaattcga tattattgta caattttgat 5041 taataaacaa attgcaatta aaattaaaat aaagtgccaa aataaacaa