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LOCUS XM_017140591 5094 bp mRNA linear INV 09-DEC-2024 X3, mRNA. ACCESSION XM_017140591 VERSION XM_017140591.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140591.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5094 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5094 /gene="chas" /note="chascon; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056691" CDS 252..4418 /gene="chas" /codon_start=1 /product="uncharacterized protein chas isoform X3" /protein_id="XP_016996080.2" /db_xref="GeneID:108056691" /translation="MALSKTIKSKAGAKDEQNELVEFEPKDDEESNEATASNCDTEAI TKEEEWITKRKTELTTTRQIETRVKRNVKLQDGKVIEDSGPIVSTNTTEDTDKQETET TEKRDLDLPDDLDGNAQLIDVAALQAGAVNETQLAQIQEVFGPADGAGKLVKRMVPRP VDGLVRQTDDKRVISHEEIKDYHETEDVKHHGDFTDQTYVNAVRDGVEDLEAVLCSPE SQRQLVPLGPQVVANRSKSRKTIDSEDTQKRCLAQEDGTLVTESRRTTEHELILDDEL PDLPAANSDERGLQLQVGEQVTTTAANQRFFRQRDEQHVDVLANGRLQSTEMRYAAET TQMDKDGPADLERPGDWDSLSDRMRKLRRSQQQQQKEVALLADRKDALTKRPLDFDRE EETRKGETMKWLESHFGSESTASNDSRDDEADAEAVEPTKKSYFNVTIKSQSQPQAHA QHIHAQSHLATQQHAHPQHISHGHHPQTLPRSAERERERERERERERHPTAATLERKP PGNSAGGRSKYFQGISNWSERKDPQGSPAVNHFSSQAFRDDLQETIRRNGLKKKVSGP PGSSQGSLALAQEQQQQPKDSYVSREDILQQKRQSLSSQFLARSMRGSRDALDDLEAI PGPGPGPGPSINSPRGPEEPSHKRVAYGHRSGAINGHAVNGGAMTNGRGKSYEPAAQP PPQLPTAVPVGVLEYSGNGGGSQLSLNPRPTVPQRRRAIEKKLGEHSHSHSHHSSSHT SHTGGHLPAVKSQAPLPSQVSQLEPPPDYSPPPRSRSRSSSPQVDYLMTRDVPASTMT LSRKQQQRTRFAPTSSYPPATGGAGNLRPPGATSASTSNLSAMSGGHGGGSTSKSSRM GQAIGNSLRKLVSKIRSASAERKFRMKSAASKSREQSPSPGHDPRGGGGGGVGPPVTT YQQYNVIDGHIGSHDSEDSNSDNQRRRERERERERERERERERERDRDREREREPPKQ ENQSRLNFKRAESADPQLQHLEHQAISPRQRYYLGEDPYSSTLYGKENLYERRPRQRS NMERPDERMERLEREDDYYESRAPPPVTAAHTLGRYQKHGQRFSGSTPNLHQQQQDYR SAQTLPRKLHEQRSQQRFGNGMEKQSSGRGNYLPVAPGPQQQRGMNQNPIPSPSSNPI PGQMQPQGPAKPARTYAKVLNRSKSFNVHGMNGSNDPSPIYIEKLTRNNYQQPRQQLQ QQQEPNFGYGLGQGPNANYKSNPHLFSGKDNSLKGGLKSPSIVNLISRSQKDLTKIGP GNDDDEIVGGSYQQEQDKKQLYLRGLHQQAPDLYRVIHGDEEYGGGGSRKYPLQAKYS LDSRSPPSVELNKDTASIVRRSSEVDHQQQQQHHHQQHHHHHIQQQNLRRGSGATIIE LRTAAGGHRK" misc_feature <3456..3809 /gene="chas" /note="polyadenylate binding protein, human types 1, 2, 3, 4 family; Region: PABP-1234; TIGR01628" /db_xref="CDD:130689" polyA_site 5094 /gene="chas" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagatcagtt gtgaatctgg caacaaacca tttggctggg gctgctgctc caaaacaata 61 aaaaaacaaa aattccaaca aaaataacaa aaacaacgcg atttcaaacc gattcgatcc 121 tctcttcggc tccaaatgtg cgcgtctgtg tgagtgaaaa ataaacgagg aggttaaaca 181 taaacaacgt caacgagaag aaatcgaaat atattcgaat atatttatgt gaaaaatctg 241 aaaaaaacgc tatggcttta agcaaaacca tcaaatcaaa agctggcgcc aaagacgaac 301 aaaacgaact ggtcgaattc gagcccaaag atgacgagga gagcaacgag gccacggcaa 361 gcaattgcga tacagaagct ataaccaaag aagaggagtg gataacgaag cgcaagaccg 421 aactcacaac taccagacag atcgaaacga gagtaaagcg aaatgtgaag ctgcaggatg 481 gcaaggtgat cgaggattcg ggacccattg tgtccacaaa cacgaccgag gacaccgata 541 agcaggagac ggaaaccact gagaaacgcg accttgacct gcccgatgac cttgatggca 601 atgcccagct gatcgatgtg gccgccctgc aggcgggcgc cgtaaatgaa acgcagttgg 661 cccaaattca agaggtcttc ggaccggcgg atggggctgg gaagctggtc aagcggatgg 721 ttccacgtcc ggtggacgga ctagtgcgtc agacggacga caagcgggta atatcgcacg 781 aggagatcaa ggactaccac gaaacggagg acgtcaagca tcacggcgac tttactgatc 841 agacctacgt gaacgcagtt cgcgacggag tcgaggacct cgaggccgtc ctctgttcgc 901 cggagagcca gcgacagttg gtgcccctcg gaccgcaggt ggtggccaat cggagcaagt 961 cccgcaagac catcgactcg gaggacacgc agaagcgttg cctggcccag gaggacggca 1021 ctttggtcac cgagagtcgg cgcaccaccg agcacgagct aatcctcgac gacgagctgc 1081 ccgatcttcc agctgcgaac tccgatgaac gcggactgca gctccaggtg ggcgagcagg 1141 tgaccaccac ggcggccaat cagcggttct tccgccagcg ggacgagcag catgtggacg 1201 tgctagccaa cgggcggctc caatccaccg agatgcgcta cgccgccgag accacgcaga 1261 tggacaagga cggacccgcc gatctggagc gaccgggcga ctgggacagc ctctccgacc 1321 ggatgcgcaa gcttcgccgc tcccagcagc agcaacagaa ggaggttgcc cttttggcgg 1381 atcgcaagga tgcgctgacc aagcgacccc tggacttcga tcgcgaggag gagacgcgca 1441 agggcgagac gatgaagtgg ctggagtcgc actttggcag cgagtccacc gcctccaacg 1501 attcccgcga cgacgaggcc gatgcggaag ccgtggagcc gaccaagaag agctacttca 1561 atgtgacaat caagtcgcag agccagccgc aggcgcatgc gcagcacatc catgcccaat 1621 cgcacctggc cacccagcag catgcgcatc cgcagcacat ctcccatggc caccacccgc 1681 agacgctgcc caggagcgcc gaaagggaga gggagaggga gagggaaaga gaaagggaac 1741 gccatcccac agccgccacg ctggagagga agccgccggg caactcggcc ggcggtcgct 1801 ccaagtactt ccagggcatc tcgaactggt cggaacgcaa ggatccccag ggatccccgg 1861 cggtcaatca cttctcgtcg caggcctttc gcgacgatct gcaggagacc attcgaagga 1921 atgggctgaa gaagaaggtc agcggcccgc ctggttccag tcagggatcc ctggctttgg 1981 cccaggagca gcagcagcag cccaaggaca gctatgtcag ccgcgaggat atactgcagc 2041 agaagcgcca gagtctctcc tcacagttcc tggcccgctc gatgcgtggc tctcgcgatg 2101 ccctggacga tttggaggcc ataccgggac caggacctgg accgggtcca tctataaact 2161 caccgcgtgg ccccgaggaa ccgtcgcata agagagtagc ctacggtcat cgcagcggcg 2221 ccatcaacgg gcatgcggta aacggaggag cgatgaccaa tggacgtggc aagagctatg 2281 agccagctgc tcagcctcct cctcagctgc ccaccgcagt tccagttgga gttctagagt 2341 acagcggcaa tggcggtggc agccagctga gcctcaatcc gcgacccacc gtcccgcagc 2401 gacgacgtgc catcgaaaag aagctgggcg agcacagcca cagccacagc caccactcat 2461 catcccacac atcgcatacg ggcggtcatc tgccggcagt caagtcgcag gctccgctgc 2521 cctcgcaggt cagccagctg gaaccgccgc cggactactc gccgccgccc aggagtcgca 2581 gtcgctcgtc ctcgccgcag gtggactacc tgatgaccag agatgtgccc gccagcacga 2641 tgaccctcag ccggaagcag cagcagcgca cccgattcgc acccacatcc agctatccgc 2701 cggcaaccgg aggggcaggc aacctccggc caccgggcgc cacctcggcc tccacctcga 2761 acctgtcggc catgagcgga ggtcacggcg gaggcagtac ctccaagtcc agccgcatgg 2821 gccaggcgat tggcaattcg ctgcggaagc tggtcagcaa aatccgttcg gccagtgccg 2881 agcgaaagtt tcgaatgaaa tcggcggcca gcaagtcgcg cgaacagtcg cccagtccgg 2941 gacacgatcc ccggggtgga ggaggaggag gagtgggtcc accggtgacc acctaccagc 3001 agtacaatgt gatcgatggg cacatcggta gccacgattc cgaggactcc aatagcgata 3061 atcagcggcg cagggagagg gagcgagaaa gggagcgcga gcgggaaagg gagcgggaaa 3121 gggaaagaga tcgagatcgg gaacgggaaa gggagcctcc caagcaggag aaccaatcgc 3181 gtttgaattt caagcgcgcc gagtccgcgg atccccagct gcagcacctg gagcaccagg 3241 ccatcagtcc caggcagcgg tactacctgg gcgaagatcc ctactccagc acgctctacg 3301 gcaaggagaa tctctacgag cgacggccac gccagcgcag caacatggag cgtccggacg 3361 agcgaatgga gcgcttggag cgagaggatg actactacga gtcgcgggct ccgccgccgg 3421 tgacggctgc ccacacgttg ggtcgctacc agaagcacgg ccagcgcttc agtggctcta 3481 cgcccaatct gcaccagcag cagcaggact accgctcggc ccagacgctg ccgcgcaagt 3541 tgcacgagca gcgcagccag cagagattcg gcaacgggat ggagaagcag tcgtctggta 3601 ggggcaacta cctgccggtt gctcctggac cgcagcagca aagggggatg aaccagaatc 3661 ccattccaag tcccagcagc aatccgattc ccggccagat gcagccgcag ggaccggcga 3721 aaccggccag gacctacgcc aaggtcctga atcgcagcaa gagctttaat gtgcacggga 3781 tgaacggaag caacgacccc agtcccatct acatcgagaa gctcacgcgg aacaactacc 3841 aacagccacg ccagcagctg caacagcagc aggagccgaa ctttggctat ggtttgggcc 3901 agggacccaa tgccaactac aagtccaatc cgcatctctt ctccggcaag gacaactcgc 3961 tgaagggcgg cctgaagagc ccctcgattg tgaatctcat aagtcgcagc caaaaggatc 4021 tcacgaagat cgggccgggc aacgatgacg acgagatcgt cggcggcagc tatcagcagg 4081 agcaggataa gaagcagctg tatttgcgtg gcctgcatca acaggcaccg gatctttacc 4141 gcgtgataca tggcgacgag gagtacggtg gcggtggctc caggaagtat ccgctgcagg 4201 ccaagtattc gctggactcg cgttcgccgc cctccgtgga gctcaacaag gataccgcga 4261 gcattgtgcg gcgcagcagc gaggtggacc atcagcagca gcagcagcat caccaccagc 4321 agcaccacca ccatcacatc cagcaacaga atctgcgacg tggctcggga gccaccatca 4381 ttgagctgcg caccgccgcc ggtggccatc gcaagtaatt cgccattatc ctaccaagac 4441 cataagatcc tacactccta tattttgaaa ccatagtcga gctttccttg tgtctagtgt 4501 ttaaattcct catttggaac tttttcaatt tttaaaatca aaatacatta taaaattcac 4561 taagaaccta aaaaatagca ttgggaaagc tcgactattt aattccctac catattccct 4621 aactatttgc taacaaatgc tcggccgtgg gctttagttt catttgacaa gcagcaaata 4681 aaaacaaaaa ggccaatcaa ccaattgata ccaattgtta aatgggtaat gaaaaagcta 4741 taaagttgat ggtaaatcga taacgaaata caaaagtaat gttaaaaaaa tataaaaatc 4801 aaaagataag aaaagaaaat ctaaaagcaa cgtggaagcc attcccactg tcctgccacg 4861 cctcttccaa tcgtaatttg ataataccta ctataatgcc tacatacgcc taattacatt 4921 gtctatttta tcatttttgt tttttttttt actactaata ttaacgtttg ttgtatagat 4981 accgttaaat cgataaacta actaaaataa ctaatattaa ttcgatatta ttgtacaatt 5041 ttgattaata aacaaattgc aattaaaatt aaaataaagt gccaaaataa acaa