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LOCUS XM_017140570 4526 bp mRNA linear INV 09-DEC-2024 homolog scalloped (sd), transcript variant X4, mRNA. ACCESSION XM_017140570 VERSION XM_017140570.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140570.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4526 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4526 /gene="sd" /note="TEA domain transcription factor 1 homolog scalloped; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108056687" CDS 836..2158 /gene="sd" /codon_start=1 /product="protein scalloped isoform X4" /protein_id="XP_016996059.1" /db_xref="GeneID:108056687" /translation="MKNITSSSTCSTGLLQLQNNLSCTELEVAEKAEQQAVGPGTIPS PWTPVNAGPPGALGSADTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQ EALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKL REIQAKIKVQFWQPGLQPSTSQDFYDYSIKPFAQPPYPAGKTSTAVSGDETGIPPSQL PWEGRAIATHKFRLLEFTAFMEIQRDDMYNRHLFVQLGGKPSFSDPLLETVDIRQIFD KFPEKSGGLKDLYEKGPQNAFYLVKCWADLNTDLTTGSETGDFYGVTSQYESNENVVL VCSTIVCSFGKQVVEKVESEYSRLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMM NSVLENFTILQVMRARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKE" misc_feature 1097..1300 /gene="sd" /note="TEA domain; Region: TEA; smart00426" /db_xref="CDD:128703" misc_feature 1520..2146 /gene="sd" /note="YAP binding domain; Region: YBD; pfam17725" /db_xref="CDD:435993" polyA_site 4526 /gene="sd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagctgag ttgagttgag ttggccaggc caagaagcag gcgcaacaac cgaacgcgaa 61 cgcgagcgca gggaaacaac aagaaaacaa caatcccagt cccaatccca gcaatacgaa 121 tcggacaacc caacaaccag accagaccag accagctata gtgctatagt gtgttatcga 181 cgctgacgtc ggcgtcgttc tttgtattga ttcgaatttg gattcggatt cagtcgatga 241 gtttctctcg cttctgcgcg ttgcgttttt cgcagtgttt ccgcgatttt tcgttgtcgt 301 catcgttgtt tcgtatcgtt tcgtttcgtc tcgtctcgtt tcgttgttgt gtgtggtgtg 361 tggtgtatag tgcgccgcct cctctcattt cagccccctt ttttcgtaca gccgtgagtg 421 gctgtaaaag tttccatccc gtcccagacg ttagctgcta ctaagtataa ctaagctata 481 tggtataata ataaaacaga gaaacaaaaa aaccgctcca tcgcgttatc aacggacata 541 gataataaca cacccaatat aaagtctgaa aaaacagtta ctgttacaag cgaataataa 601 taataagagt gagtagtgag tgccggagtg agtgcctttg accagccgag acgacgacgg 661 tacggtacgg ttcttgatgg tgacatcaga gtctaaatct agcgcgaaca gattttaatt 721 ccgtgaacta gtagacgacg cacagtcacc gagtaccgag tctacgtacc tctcatatcg 781 ggcatacccg tgaacccaac caaccaaccc gtgaaaacga caagaaactg gctgcatgaa 841 aaacatcacc agctcgagca cttgcagcac tgggctgctg caattgcaga acaacctgag 901 ctgcactgag ttggaggttg cggagaaggc agaacagcag gcagttggac ccggcaccat 961 accatcaccg tggactccag tgaatgccgg tcctccaggt gcccttggat cggcagacac 1021 aaatggcagc atggtggata gcaaaaacct ggatgttggt gatatgagcg atgacgaaaa 1081 ggatttatcc tccgccgatg ccgaaggtgt atggagtccc gatatcgaac agagctttca 1141 agaggcttta tctatatatc cgccgtgcgg acgtagaaaa atcatcttat ccgacgaggg 1201 taaaatgtat ggtcgcaacg aactgatcgc acgatatata aaactgcgca caggcaagac 1261 gagaaccagg aaacaagtca gctcgcacat ccaagtgctg gctagacgga aactccgcga 1321 gatccaggcg aaaatcaaag tgcaattctg gcaacctgga ctacagccaa gcacgtccca 1381 agatttctat gattacagca tcaagccctt cgcccagcca ccctatcccg ccggcaaaac 1441 gtcgacggcg gtgtccgggg acgagactgg aattccgccc tcacaattgc cctgggaagg 1501 tcgagccatt gccacgcaca aattccgcct actcgagttt acggcgttca tggaaatcca 1561 gagagatgat atgtataacc gtcacctttt cgttcaactc ggcggtaagc catccttttc 1621 cgatccactg cttgagaccg ttgatatacg acaaatattc gacaagtttc cggaaaagtc 1681 ggggggcctc aaagatctct acgaaaaggg tccacagaat gcgttttacc tagttaaatg 1741 ctgggcggac ctgaataccg acctaacgac cggcagcgaa acgggtgatt tctatggcgt 1801 aaccagccaa tacgaaagca acgagaatgt cgtgctcgtg tgctccacga tcgtttgctc 1861 ttttggcaaa caggtggtgg agaaggtgga aagcgagtac tcgcggctgg agaacaatcg 1921 ctatgtgtac cgcatccagc ggtctccgat gtgcgagtac atgatcaatt tcattcagaa 1981 gctgaagaac ctaccggaac gctatatgat gaacagtgtg ctggaaaact ttacaatatt 2041 gcaagtaatg agagcccgcg aaacgcagga gacactgctg tgcatagcct atgtgtttga 2101 ggtagcggcc cagaacagcg gtaccaccca ccatatatac cggttaatta aggaatagca 2161 aaagctgcat ggagcagagc ccgacctgtc tgcgaatccc gtcatcaaca cacaagttca 2221 caaatatatc agcgacgata atagtatcaa tgcgaatgcc aagaattgcg agggtaaggc 2281 gagtcaagac aacaccaaga gtgccagaag caacatcaac agcagcagca acagcagcaa 2341 caacagcagc agcaacaaca gcagcagcaa cagcaatatt aagaatagga atctatctgc 2401 tacacttatt aagcaatcac ttagctcgcc gaaccaacat cataacgaaa tcgatgcctt 2461 gactgcactt caagtggagg aggttatata tacacagtca caaggaaata ccagttacca 2521 gttggactcc gaatcgagca acaacaataa cgtaccagag ccaacaacac tccagcagca 2581 acagcaacat accgcctatg aggatcgtca agtagtcctt ccaccatacg acctatgcat 2641 cggcaacaag caaccgcaac cgcaacagga actggaactc gaactggagc agaagcagct 2701 ggagagcact agctatgagc agttcctcaa gctgtccgct catgaatatt cgcaatcaga 2761 accaagaagc tccgcagctg ctctaaatct cagcagtatt ggcgaaaagg aatcagcagt 2821 gggaggtgaa tccaagccgg aacttgaaga tcacccagaa tttcggacag aggacatccg 2881 aaccactgcc gattgtggga tcatcagtaa caaaggccgt gagccgtgag cgccatataa 2941 aaccagcagc ctttaagcaa ggttgaggct aattttaagg gctagaaata taaggaacga 3001 caccatcaga actttttgtt ttccaccccc aaacgaaaaa cgaaaaaaaa ggagcctcaa 3061 aaacgatcga ttggtgtggt gttcagtatc gaaatcagat ttttatttgt gcaaaataaa 3121 aagtgtatca tattttatgt tacaataatt atttgaaagg ctctttagtt cagcgtagag 3181 tgctttctgt aaaattgtac tatacatgca taaaaaaaaa tacatttaaa tgatctcaaa 3241 gttacttaaa acatattttt tgtgtataat tttttttatg aaaactttac aaaatcctga 3301 aaatgaaaaa aaaaaattaa aagaaaagag aagagatgat cgtgcgctga tttttaaaaa 3361 ataggatagt aagagtatat attgactaat atgtttgaaa caaagaacgc cgcgaaagaa 3421 acagatacaa tatagttttc cgaattacca ttagatatgc atgattatgt gcaaatagag 3481 ttaaggtact ttttttttta tataaaagct tttgcatagg gctacaaaat gtatagaaat 3541 aatatgttag ttctatttta tttgaagctt gatctttcat ttagcaagag tgcagtgcag 3601 aggaaagaaa gggagagcaa aggagcggaa tggaatagaa agggaaagat aggatagctg 3661 gctggagtgg aaaccgattt ggagctagat aaggtaactt cgagaactta agatcaaagt 3721 atattacaat ttgttaaccg aaatcgaaat cgaaatcctg gcaagaggcg agacgcgatg 3781 aggagggaaa aggatataga atcgagcgaa agatgttgtg tgttacgcga tggtttttgt 3841 ctatccattc gtattgtagt ggcaaaatgg atatgtaagt aattgaatta agcatgtgtc 3901 gaatgatcca ccgttaatta aattattaat tactgattta aattcattag tattaaaaat 3961 gcccatatta tataatataa caagtaaaac tggtatgtaa ttagccattt tctgcatcca 4021 ccgaagacaa gctcgaactc gaacacatct aaaatgtcca aattgtaaga aattatacat 4081 atatgcagaa gaagtaacat aaagatttat tttccgatct aaataaaaaa acaaaaataa 4141 aagtaaaagt aatgatagag ataacgataa cgaaaatgta ttctgaatgt aaaacagcct 4201 aattaaaatt atcgtaataa taataatata attacacata tatatttacc aaataatata 4261 acatatttat gctctaaagt atatacgact acaacaaata cgcatttttt gttcgtagat 4321 aagataagtt aatgtgaaag aaataatatg attgcatact aaaaagttcc acaacaatga 4381 cagttgaatt ttatttcgag agctaagaaa accagcaaca aaaatatttt aaagctatag 4441 acttaaaaat attattatta aagatcacta atgaatatgg ttggcaaaat ataggtggag 4501 agtaaatata ataaattcaa atttaa