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LOCUS XM_017140567 5666 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017140567 VERSION XM_017140567.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140567.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5666 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5666 /gene="Chc" /note="clathrin heavy chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108056685" CDS 332..5368 /gene="Chc" /codon_start=1 /product="clathrin heavy chain" /protein_id="XP_016996056.1" /db_xref="GeneID:108056685" /translation="MTQPLPIRFQEHLQLTNVGINASSFSFSTLTMESDKFICVREKV NDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALKAQKTLQIFNIEMKSKMKAH TMTEDVVFWKWISLNTLALVTETSVYHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNA SQQWLLLVGISALPTRVAGAMQLYSVERKVSQAIEGHAASFATFKIDANKEPTTLFCF AVRTASGGKLHIIEVGAPPTGNQPFAKKAVDVFFPPEAQNDFPVAMQVSAKYDTIYLI TKYGYIHLYDMETATCIYMNRISADTIFVTAPHEASGGIIGVNRKGQVLSVTVDEEQI IPYINTVLQNPDLALRMAVRNNLAGAEDLFVRKFNKLFTAGQYAEAAKVAALAPKAIL RTPQTIQRFQQVQTPAGSTTPPLLQYFGILLDQGKLNKFESLELCRPVLLQGKKQLCE KWLKEEKLECSEELGDLVKASDLTLALSIYLRANVPNKVIQCFAETGQFQKIVLYAKK VNYTPDYVFLLRSVMRSNPEQGAGFASMLVAEEEPLADINQIVDIFMEHSMVQQCTAF LLDALKHNRPAEGALQTRLLEMNLMSAPQVADAILGNAMFTHYDRAHIAQLCEKAGLL QRALEHYTDLYDIKRAVVHTHMLNAEWLVSFFGTLSVEDSLECLKAMLTANLRQNLQI CVQIATKYHEQLTNKALIDLFESFKSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTN QIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ KYIEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEEVEKRNRL KLLLPWLESRVHEGCVEPATHNALAKIYIDSNNNPERYLKENQYYDSRVVGRYCEKRD PHLACVAYERGLCDRELIAVCNENSLFKSEARYLVGRRDAELWAEVLAESNPYKRQLI DQVVQTALSETQDPDDISVTVKAFMTADLPNELIELLEKIILDSSVFSDHRNLQNLLI LTAIKADRTRVMDYINRLDNYDAPDIANIAISNQLYEEAFAIFKKFDVNTSAIQVLID QVNNLERANEFAERCNEPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYVDVVDVAS KVESWDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGN RCFSDGMYDAAKLLYNNVSNFARLAITLVYLKEFQGAVDSARKANSTRTWKEVCFACV DAEEFRLAQMCGLHIVVHADELEDLINYYQNRGYFDELIALLESALGLERAHMGMFTE LAILYSKFKPSKMREHLELFWSRVNIPKVLRAAESAHLWSELVFLYDKYEEYDNAVLA MMAHPTEAWREGHFKDIITKVANIELYYKAIEFYLDFKPLLLNDMLLVLAPRMDHTRA VSYFSKTGYLPLVKPYLRSVQSLNNKAINEALNGLLIDEEDYQGLRNSIDGFDNFDNI ALAQKLEKHELTEFRRIAAYLYKGNNRWKQSVELCKKDKLYKDAMEYAAESCKQDIAE ELLGWFLERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYLIQVLREYTTK VDKLELNEAQREKEDDSTEHKNIIQMEPQLMITAGPAMGIPPQYAQNYPPGAATVTAA GGRNMGYPYL" misc_feature 386..499 /gene="Chc" /note="Clathrin propeller repeat; Region: Clathrin_propel; pfam01394" /db_xref="CDD:460192" misc_feature 773..892 /gene="Chc" /note="Clathrin propeller repeat; Region: Clathrin_propel; pfam01394" /db_xref="CDD:460192" misc_feature 923..1033 /gene="Chc" /note="Clathrin propeller repeat; Region: Clathrin_propel; pfam01394" /db_xref="CDD:460192" misc_feature 1097..1195 /gene="Chc" /note="Clathrin propeller repeat; Region: Clathrin_propel; pfam01394" /db_xref="CDD:460192" misc_feature 1217..1321 /gene="Chc" /note="Clathrin propeller repeat; Region: Clathrin_propel; pfam01394" /db_xref="CDD:460192" misc_feature 1322..1393 /gene="Chc" /note="Clathrin, heavy-chain linker; Region: Clathrin-link; pfam09268" /db_xref="CDD:462732" misc_feature 1397..1597 /gene="Chc" /note="Clathrin-H-link; Region: Clathrin_H_link; pfam13838" /db_xref="CDD:463995" misc_feature 1955..2347 /gene="Chc" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 2390..2806 /gene="Chc" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 2831..3238 /gene="Chc" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 3269..3685 /gene="Chc" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 3716..4135 /gene="Chc" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 4154..4582 /gene="Chc" /note="Clathrin heavy chain repeat homology; Region: CLH; smart00299" /db_xref="CDD:128594" misc_feature 4616..5017 /gene="Chc" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" polyA_site 5666 /gene="Chc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagattcct cgacatatcg gcacaattgt ataacttttt cacacctcta ccgtctcgtc 61 tctcagtcaa acaaaataaa cttagagctt gattaaattc tttgtgtctt ctgtgtgtgt 121 gcccgtcatc aagcaacaaa tcgacgtatt ttctcgacta aagagttcca atggaaaccc 181 catcttgaac acggaaaacg actaaaatcg aaactgaaaa ctaaactaaa acccgaaacg 241 aatcaaaaac tgttgaagga gcgtgcaatt gaatcagaga tccatttacg ttgtaatagt 301 ctgtcaataa ctagacttca ctgtagtcaa gatgacgcaa ccactgccca tccgctttca 361 ggagcattta cagctcacaa atgtcgggat caacgccagt tcattttcat tcagcacgct 421 cacgatggaa tcggataagt ttatctgcgt gcgggagaag gtcaacgata ccgcccaggt 481 ggtcatcatc gacatgaacg acgccaccaa tcccacccgg cgtcccatct cagcggactc 541 ggccatcatg aatccagcta gcaaggtcat tgcgctcaaa gcgcaaaaga cgttgcagat 601 cttcaacatt gagatgaaat cgaagatgaa ggcgcacacg atgaccgagg atgtggtgtt 661 ctggaagtgg atatccctga acacgctggc tctcgtcacg gaaacgagtg tgtaccactg 721 gtccatggag ggcgactcga tgccgcagaa gatgttcgat cgtcactcct cgctgaacgg 781 ttgtcagatc atcaactacc gctgcaatgc ctcccagcag tggttgctcc tggtgggcat 841 ctctgccctg ccgactcgcg tcgccggagc catgcagctg tattcggtgg agcgcaaggt 901 ctcgcaggcc atcgagggcc atgcggccag ctttgccacc ttcaagatcg acgccaacaa 961 ggagccaact acgctgttct gcttcgccgt gcgcaccgcc agcggcggaa agttgcatat 1021 catcgaggtc ggtgccccgc cgacgggcaa tcagccgttc gccaagaagg ccgtcgacgt 1081 attctttccg ccggaagcac aaaacgattt ccccgtcgcc atgcaagtct ccgccaagta 1141 tgacaccatc tatttgataa ccaaatatgg gtacattcat ctctatgaca tggagacggc 1201 cacgtgcatc tacatgaatc gtatatcggc cgatacgatc tttgttacag caccgcatga 1261 ggccagtggc ggcataatag gcgtaaatcg caagggccaa gtgctttcgg tgaccgtcga 1321 cgaggagcag atcattccgt acatcaacac agtgctccag aatcccgatt tggctttgcg 1381 catggctgtt aggaataatc tagctggcgc ggaggatctc tttgtgcgga agttcaacaa 1441 gctcttcacc gccggtcaat atgcagaggc agccaaggtc gctgccttgg cgccaaaggc 1501 cattctgcgc acaccacaga ccattcagcg tttccagcag gttcaaacgc ccgctggttc 1561 tacaacacca ccgctgctgc agtatttcgg catcctgctc gaccagggaa agctgaacaa 1621 gttcgaatcg ctggagctct gccgacccgt cctcctgcag ggcaaaaagc agctgtgcga 1681 gaagtggctg aaggaggaga agctcgagtg cagcgaggag ctgggcgatc tggtcaaggc 1741 ctcggattta acgctcgctt tgtccatcta tctgcgcgcc aatgtgccga ataaggtgat 1801 ccaatgcttc gcggagaccg ggcagttcca gaagattgtg ctgtacgcca agaaggttaa 1861 ctatacgccc gattatgtat tccttttgcg ctctgtgatg cgcagcaatc cggagcaggg 1921 agccggcttc gcatccatgc tggtggccga ggaggagccg ctggcggaca ttaaccagat 1981 tgtggacatc ttcatggagc actcgatggt gcagcagtgc actgcgttcc tgctggatgc 2041 cctcaagcat aatagacccg cagagggagc tctgcagacg cgcctgcttg aaatgaactt 2101 gatgtcggcg cctcaggtgg ccgatgccat tctgggcaac gccatgttca cccactacga 2161 ccgggcgcac attgcccagc tgtgcgagaa ggccggtctg ctgcagcgcg ctttggagca 2221 ttacacggat ttgtatgaca ttaagagggc cgttgtccat acacacatgc tgaatgccga 2281 gtggctggtt agtttctttg gcactctctc cgttgaggat tcgctggagt gcctaaaagc 2341 catgctgacg gctaatctgc gccagaatct gcagatctgt gtgcagattg ccaccaaata 2401 ccacgaacag ctgaccaaca aggcgctaat cgatctgttc gagagcttca agagctacga 2461 cggcctgttc tacttcctca gcagcatcgt gaacttctcg caggatccgg aggtgcactt 2521 caagtacatc caggcggcct gcaagaccaa ccagatcaag gaggtggagc gcatctgccg 2581 cgagtccaac tgctacaatc cggagcgggt gaagaacttt ttgaaggagg ccaagctgac 2641 ggatcagctg ccgttgatca ttgtctgcga tcgcttcgat ttcgtgcacg atctggtgct 2701 gtatctctac cgcaacaatc tacaaaagta cattgagatc tatgtgcaga aggtgaatcc 2761 ctcgcgattg ccggttgttg tgggtggtct cctggatgtc gattgcagtg aggatataat 2821 caagaatcta attctcgtcg tcaaggggca attctccacg gatgagttgg tcgaggaggt 2881 ggagaagcgc aaccgtttga agcttctcct gccctggtta gagtcccgcg tccacgaggg 2941 ctgcgtcgag ccagccaccc acaatgcgct ggccaagatc tacatcgatt cgaacaacaa 3001 tcccgagaga tatctgaagg agaatcagta ctacgacagt cgtgtcgtcg gtcgctactg 3061 cgagaagcgg gatcctcacc tggcctgcgt tgcctacgag cgtggattgt gcgatcgcga 3121 gctcattgcc gtttgcaacg agaattcgct gttcaagagt gaggctcgct atttggtcgg 3181 ccgccgcgat gcggaactct gggccgaagt gctcgccgag agcaatccct acaagcgaca 3241 gctgattgat caggttgtgc agacagccct ctccgaaacc caggatcccg atgacatttc 3301 ggtgacggtg aaggccttca tgaccgccga tttgcccaac gagctgatcg aactgctcga 3361 gaagatcatc ctggattcct ccgtcttcag tgatcatcgc aatctgcaga atttgctcat 3421 cctgaccgcc atcaaggcgg atcgcacgcg cgtcatggac tacatcaatc ggctggacaa 3481 ctacgatgct ccggacattg ccaacattgc gatcagcaat cagctgtacg aggaggcctt 3541 tgccatcttc aagaagttcg atgtgaacac ctcggccatc caggtgctca tcgatcaggt 3601 gaacaatttg gagcgagcca acgaattcgc cgagcgctgc aacgagccgg ccgtctggtc 3661 gcagctggcc aaggcccaac tgcagcaggg cctcgttaag gaggccatcg attcgtacat 3721 caaggccgat gatccgagtg cctatgtgga tgtcgtcgat gtggccagca aggtggagtc 3781 gtgggacgac ctggtgcgct atctccagat ggcccgcaag aaggcacgcg aatcgtacat 3841 cgaaagcgag ctgatttatg cctacgctcg caccggacgc ctcgccgatc tggaggaatt 3901 catctcggga ccgaatcatg cggacatcca gaagatcggc aatcggtgct tcagcgacgg 3961 catgtacgat gcggccaagc tgctgtacaa taatgtcagc aactttgcac gtttggccat 4021 tactttggtg tatctaaagg agttccaggg agctgtggat tcggcacgca aggccaactc 4081 gacgcgcacc tggaaggagg tgtgcttcgc ctgcgtggac gccgaggagt ttaggctggc 4141 gcagatgtgc ggtttgcata tcgtagtgca tgccgatgag ctagaggatc tgattaacta 4201 ctatcagaat cggggatatt tcgatgagct gattgctctg ctcgaatccg ctttgggttt 4261 ggagcgtgcg cacatgggca tgttcaccga actggctatt ctgtattcta aattcaaacc 4321 ttccaagatg cgcgaacatc tcgagttgtt ctggtcgcgc gtcaacattc caaaggtgct 4381 gcgtgccgcc gaatcggcgc acttgtggtc cgagttggtg ttcttgtacg acaagtacga 4441 ggagtacgac aatgccgtct tggccatgat ggcccatccc acggaggcgt ggcgcgaggg 4501 acacttcaag gacatcatca ccaaggtggc caacatcgag ctgtactaca aggccatcga 4561 gttctatctg gactttaagc cgctgctgct gaatgatatg ctccttgtgc tggcgccccg 4621 catggatcac acgcgtgccg ttagctactt ctcgaaaacc ggctacttgc cgctcgtcaa 4681 gccctatctg cgttccgttc agtctctgaa taacaaggca atcaacgagg cactcaacgg 4741 actgctcatc gacgaggagg actaccaggg tctgcgcaat tcgatcgatg gattcgacaa 4801 ctttgacaac attgcgctgg cccagaagct cgagaagcac gagctcaccg aattccgcag 4861 aatcgccgcc tacttgtaca agggaaacaa ccgctggaaa cagagcgtgg agctgtgcaa 4921 aaaggacaag ctctacaagg atgccatgga gtacgccgcc gagtcttgca agcaggatat 4981 tgccgaggag ttgttgggct ggttcctaga acgtgacgct tacgattgct ttgccgcatg 5041 tctatatcag tgctacgact tgctgcgccc ggatgtcatc ttggagctgg cctggaaaca 5101 taaaatcgtg gactttgcca tgccctattt gatccaggtt cttcgggaat acacaacaaa 5161 ggtggacaaa ttggagctga acgaggccca gcgcgaaaag gaggacgatt caaccgaaca 5221 taaaaatatt atccagatgg agccgcaact gatgatcacc gctggccccg caatgggcat 5281 tccaccacaa tatgcacaga attatccccc cggtgcggca acggtaacgg cggcaggagg 5341 acgcaacatg ggctatccct acttgtagaa ggggtctctc atgcgcaccc aagaaatcca 5401 tcaaaacaac tttaaaacaa atgtatcagc attaaaggaa taccaataaa ataagaaaaa 5461 taatctatta attgcatgtg cgccaaaagt taccaaaaca aaatgaaaca aatcgaaacg 5521 aaacgacaaa cattattaaa ttaaagctat gcaattaaca atccaatttt tggtttgttt 5581 gtagacattt aaaaaatgat tatatgtttt gataattaca gcactcttta ttcaaatata 5641 acagaatata ttacttttta tcataa