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LOCUS XM_017140286 3241 bp mRNA linear INV 09-DEC-2024 (LOC108056476), transcript variant X2, mRNA. ACCESSION XM_017140286 VERSION XM_017140286.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140286.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3241 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3241 /gene="LOC108056476" /note="ubiquitin-conjugating enzyme E2 Q2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056476" CDS 774..1967 /gene="LOC108056476" /codon_start=1 /product="ubiquitin-conjugating enzyme E2 Q2" /protein_id="XP_016995775.2" /db_xref="GeneID:108056476" /translation="MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNG KRYDIHANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRELC RLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGNEETDSDQEEI EDPIGESEQESEGDEDLPLEMDDVRSTNKKDDMEVEHLATLERLRQSQRQDYLKGSVS GSVQATDRLMKELRDIYRSDAFKKNMYSIELVNESIYEWNIRLKSVDPDSPLHSDLLM LKEKEGKDSILLNILFKETYPFEPPFVRVVHPIISGGYVLIGGAICMELLTKQGWSSA YTVEAVIMQIAATLVKGKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTP PKEDG" misc_feature 1446..1925 /gene="LOC108056476" /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 Q1, Q2, and related proteins; Region: UBCc_UBE2Q; cd23802" /db_xref="CDD:467422" polyA_site 3241 /gene="LOC108056476" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaaaaaggt aaagcgggcg gacgtgcgtg gaactgaaac tgaatttaat tctccgtgaa 61 tctgaatttt cgctgctgcc caaaaagccc aggaaaagcc aacaaacaaa tatataaact 121 gagcactgaa aaagaaaagc aaagaaaaaa cggtaataag tcgggaaaat caaagtgcaa 181 aactgaacgc caaaaaaacg agcggagagt gcgagcgaga cagcgcatgc tgggcgccgc 241 aggagctgaa gaagaagaag aagcagtgag agtgaagtta actggaagtg gagtggaaag 301 aggagagcga gcgagaggag aggagagcca gcggaaggga aacaacaaag aacgacggcg 361 acggccaaaa gaaaaagtcg cctttccaat ctacctcgaa acacaagcaa atcgttattc 421 taaaaagcac aataactaaa ataaacacca aaatataata taaatatact ggtagaagag 481 gaagcagcca cttgacaaaa aggaaaacgc aacagcagcg ccatctagtg tcggcgagtc 541 gaagcagcag ctgacagaca gaaagagacc gcaaagaggg gagcgaacaa caaatacaaa 601 tacaagcttt cttcgcctgg aagtcgcaga ggaggaacga cagagagggg ggagtcggct 661 cccgaaaaac tccatttgga ccacaaaaat ataataatca tcatagtagc caagtagaga 721 gcccagaaaa agaagaccag accagaccag ttgccttttt agcccgccac aagatggcgt 781 gccttaacac cctgaagcag gaaatcaaaa cgctggagaa gatcttcccg aagaaccacg 841 agcgctttca gatcctcaat tccagcgtcg acgagctgct ctgtcggttc atcgataaga 901 atggaaagcg ctacgatatc catgccaaca taacggaaac gtatccctca tcgccgcctg 961 tttggttcgc cgaaagcgag gagacgagcg tcacaaatgc tgttcaaata cttagcaata 1021 caaatggacg tgataatcac gtgattaatc aggtgggcat actgctgcgt gagctgtgcc 1081 gactacacaa cgttccactg ccacccgaca tcgataattt ggccctgccg ctgcaaacgc 1141 cgccgccatc cgcttcgcca ctccgctgcg agcagagacc cggcggcggg ggagcggggg 1201 gcgggggcgg accgcacggc aacgaggaga ccgactcgga tcaggaggag atcgaggatc 1261 ccattggcga gagcgaacag gagagcgagg gcgacgagga tttgccgctg gaaatggatg 1321 atgtacgaag tacaaacaag aaggacgaca tggaagtgga acacctagca actctagaaa 1381 gactgcgtca aagtcaaaga caagactatc taaaaggttc cgtttcgggc tccgtgcagg 1441 caaccgatcg cttgatgaag gaactacgtg atatttatcg atcggacgcc ttcaagaaga 1501 acatgtattc aattgagctc gtcaacgagt cgatttacga gtggaacata cgcctcaagt 1561 ctgtcgatcc ggacagtccg ctgcacagtg atctgctaat gctcaaggag aaggagggca 1621 aggacagcat actgctcaat atcctcttca aggagacgta tcccttcgag ccgccctttg 1681 tgcgcgtcgt ccatccgata atctcaggcg gctatgtgct catcggcggt gccatctgca 1741 tggaattgct gaccaaacag ggctggagct cggcctacac cgtggaggcg gttatcatgc 1801 aaatagcagc caccctggtc aaaggaaagg cgcgcatcca gttcggggcc accaaagcac 1861 tgacccaggg ccaatatagc ttggctcgag cccagcagag cttcaagtct ctggtgcaga 1921 ttcacgaaaa gaacggctgg ttcacaccgc ccaaggaaga tggctaagat agaagagtcc 1981 ccagacgcac atcctttata gaataacgca tgccacaacc agcacacatc catcagccac 2041 cagcattacc ttatccacac cacccgccaa gcccaagcac acacacctac cgcactcact 2101 gccggttcga taaaaccata tggacggagc ccccgaactc gaggagaagg cccactttgt 2161 tttgcttgct tgcaacgtgg atggaaccat ccgcatataa ttaagtttaa cgtgtatacc 2221 ttagacacac ttttgtatcc acggttgctc tttttttcgt tgcaagtaaa ttcatttgta 2281 tatgcgcccc actcgacgtt taatgtagtg tagtgtgtag tcagtcgtct tctaaccaaa 2341 tccaaatcca aatcccgcgg cctgaaatcg tccatcttgt acagagtctt ggaaactgga 2401 gctgattaag tgaatatcgc agcagaggta gcagactaat cagcggacga acggtgtaaa 2461 atgtaaaggc aatatctgtt atgtatatga atataatttg taatttaaat attgtaaatg 2521 tagtggcttc gaaaaccttc caaacacaac ccccgcacac accacacaca ccatacacac 2581 acacacgcgc ctaaaatgta aactagttaa gacgcctaac tgtattctta ttttaattta 2641 acaaatccgt ggtatcttat attttttctc cctaacttaa ctggtaagca accgaaaaca 2701 aaaaacaaaa gaaacggcaa gttggcaaga gagttgacgc aatgtcgagc ggaatagata 2761 tatatatata cctatacata catataaata taaatataca taaatataaa gatatatatt 2821 aatattagcg cgagagttta gcttaagcag aataatacag aacgatgcgt cgaggatgag 2881 caaattctaa gtgtaaattc gtctttccaa ataatcgtaa aataacgtaa atctaaatct 2941 acaaagagaa aaacaaacat tacaaataaa aacaagctaa atcgagtagt tggagaacga 3001 aaatcgaaaa tatttgcaag tgtaatatgc attaaagtaa agcaaaagca aagaaaatga 3061 aaacaagagt taatttgagg acaactgttt tgctgtcccc attatcattg tttttttatt 3121 attcgtacaa cggcagacaa aatttcattg tacatttcaa aacggaaatt ggcatgcacg 3181 acgaaatgtt cattttaagt atgtatttaa taaagaagga tatatacatg cataatacgg 3241 a