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LOCUS XM_017140277 2778 bp mRNA linear INV 09-DEC-2024 (LOC108056470), mRNA. ACCESSION XM_017140277 VERSION XM_017140277.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140277.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2778 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2778 /gene="LOC108056470" /note="homeotic protein ocelliless; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056470" CDS 835..2169 /gene="LOC108056470" /codon_start=1 /product="homeotic protein ocelliless" /protein_id="XP_016995766.2" /db_xref="GeneID:108056470" /translation="MTLPTNTHASANDAGSGNNNNNHNHNNNNNSSSDEDSDMFGPPR CSPPIGYHHHRSRVPMISPKLRQREERKRILQLCAHKLERIKDSEANLRRSVCINNTY CRLTDELRREKQMRYLQNLPRTSDSGTTTELARENLFQPNMDDAKPASNTTTSSSNKS SSSSSSAYGDAFSSSNGGGGRGGGLCSLENQPPERQQQQQQQMVTPAGGASAPEAANS APLSVSGSASERVNNRKRHLSSSNLVNDLEILDRELSAINAPMLLIDPEITQGAEQLE KAALSASRKRLRSNSSSEDESDRLVREALSQFYIPPQRLISAIEECPLDVVGLGMGMN VNVNVGGISGITGIGGGGAAGAGVEVSGGKRMKLNDHHHLNHHHHLHHHLELVDFDMN QNQKDFEVIMDALRLGTPTPPSGASSDSCGQAAMMSESASVFHNLVVTSLET" misc_feature 1054..1158 /gene="LOC108056470" /note="SERTA motif; Region: SERTA; pfam06031" /db_xref="CDD:461806" polyA_site 2778 /gene="LOC108056470" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcatttcg tttcgaacgc gagaaccgtg cggacgtgtg cggttgaaca gagcagaaac 61 agaaacagaa accaaactga acagaaatcg gaaagcaacg gtgaactgaa cagcgactgc 121 gacagcacca acttctctta cgctctcgcc gccgccgtcg cctcaccccc tcacctttaa 181 ccctcaacag gcggccaccg aaaagaaaaa agaccactaa taataaaaac aattaaatgt 241 gagacccccg ccccgcccct ctgcaatttt gagtcaattg tgtgcctaaa agacccgaaa 301 caaacaaaca aacttggcaa tttttgttga atttttttat tgtgttttaa cgtgacaatt 361 tgttattgag aaactcgaaa attcaaaagt cctggattat tttgaatttt aattttggca 421 acgacaacaa caacaaagaa cataaaagag cggcagcccc ccgactaacg gtaaacagcc 481 aagtgaaatc tcaggcaaaa agtaaagaca gcaaaagcaa aggcagacag aagaagaaga 541 agcagcagca gcagcaagtg caagagagca aaaaaagagc tctgagaaag agagcgtgtg 601 tgtgtgtgcg agtgtgcgga cttccttgtt tcaaatgatt tattgaaaaa aaaaaaaaca 661 atattcaatc aaaaaaaaga aatcaaaatc aaattgaaaa tcaaattcag cagacagcag 721 agttgttttc ttctctccag gaaggctgca gctaaatcaa agacaaacaa acaaacggac 781 aaaaacaaaa gcacataaaa tacacgcttg cttttgctct ttgaaaaacg cacaatgacc 841 ttgcccacaa acacacacgc atctgcaaac gacgccggca gcggcaacaa caacaacaac 901 cataatcaca acaacaacaa caacagcagc agcgacgaag attcagacat gtttggtcca 961 ccccgctgct ccccgcccat cggctaccat caccatcgat cccgagtgcc catgatctcc 1021 ccgaagctgc ggcagcgcga ggagcgcaag cgaatcctcc agctctgcgc ccacaagctg 1081 gagaggatca aggactcgga ggcgaatctc cggaggagcg tctgcatcaa caacacctac 1141 tgccgactga ccgacgagct gcgacgcgag aaacagatgc gttacctcca gaatctgccc 1201 agaaccagcg acagcggcac aaccaccgaa ctggcgcgtg agaatctctt ccagccgaac 1261 atggacgatg ccaagccggc cagcaataca acaactagca gcagcaacaa gtcgtcctcg 1321 tcctcatcct cagcctacgg cgatgccttt agctcctcga acggcggcgg aggtcgcggc 1381 ggtggcctgt gctccctgga gaaccagccg cccgagcggc agcagcagca gcagcagcag 1441 atggtgacgc ccgccggagg ggcctccgcc cccgaggcgg ccaattcggc gcccctttcc 1501 gtttccggtt cggcatcgga gcgggtgaac aaccgcaaac ggcacctgtc cagcagcaat 1561 ttggtcaacg atctggagat actcgacagg gagctgagcg ccatcaacgc gcccatgctg 1621 ctgatcgatc cggagatcac ccagggagcc gagcagctgg agaaggccgc cctgtcggcc 1681 agcaggaagc gattgaggag caacagcagc agcgaggacg agagcgatcg gctggtgcgc 1741 gaggctctgt cccagtttta tataccgccg cagcgcctga tctcggccat cgaggagtgt 1801 cccctggatg tggttggcct gggaatggga atgaatgtga atgtgaatgt gggcggaatc 1861 agtggaatca ctggcatcgg tggaggtgga gctgcaggcg ctggcgtcga agtttccgga 1921 ggcaaacgga tgaagctgaa cgaccatcat catctgaacc accatcatca tttgcaccat 1981 catctggagc tggtcgactt cgatatgaac caaaaccaaa aggatttcga ggtgatcatg 2041 gacgcgttga ggctgggaac gccgacgccg ccgagcggcg ccagcagcga ttcctgcgga 2101 caggcggcca tgatgagcga atcggccagc gttttccaca atctggtggt cacctcgctg 2161 gagacatgaa agtaccagtg aatccgcaac cgaatccgaa tccccgagca gcagacaaag 2221 attaaagagt ttagatttta tataagacac tggcatagag tttttaagga aacatttagg 2281 ctatgacacg tacacgtact aacctaagct aagctattat tataaagaag cgaagatcgg 2341 gcggattggc cagtattact cattaatggc agtcgcgatt tgtacaaaca aaaatacaca 2401 caaaaaatag tagtaggcaa aggaaaaaac aaaagaaaac aaaacaaaaa tcaaagaatt 2461 tgtagtcaaa acagcagaaa gaaacaaaaa caaaaacaaa aaccagaaca atctataagt 2521 taaatttaaa ggaagaaaac gaaaattaac tccatacttg taacgaatca acaaaaattc 2581 agttgtggtt tccatttcgg tttcgtagag agctccgttt taaatgagaa aactatgcag 2641 aaaacttcca gttaaacaaa aaaaattgca taagccaagc acattccaca atgctatata 2701 aatgatatac ccaactttcg ttcctcctga atttttgttt tttttttcta cactatccat 2761 tggatatttt aaaatatc