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LOCUS XM_017140242 3588 bp mRNA linear INV 09-DEC-2024 variant X5, mRNA. ACCESSION XM_017140242 VERSION XM_017140242.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140242.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3588 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3588 /gene="fne" /note="found in neurons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056446" CDS 1389..2450 /gene="fne" /codon_start=1 /product="ELAV-like protein 2 isoform X2" /protein_id="XP_016995731.1" /db_xref="GeneID:108056446" /translation="MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKVSVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTL NGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILC DNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAP PLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIFVYN LAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGY TLGNRVLQVSFKTNKTKTT" misc_feature 1455..2441 /gene="fne" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 3588 /gene="fne" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaactagaa actaaaaaag caataaaaaa cgaaaaaaac accgtgcaat tcccgggact 61 cgacttcgat aatcgtgcaa tattatagaa cacttgggaa aagtcgagta gagttgcaat 121 cgctagcaca tacacacaga ccctagtcaa atccccaatt cttttgcatt tttttgcgag 181 tgtgtgcctc gagtgtctga ctatcaacta ctacgcgaga ttcatcagat cccccaatcg 241 tcggcgatat atatatatat actatatagc caggaaatcg ttggacaaag gagcgtgcag 301 gccaaaaaag gagagagaga gagagagcga gcgagcgagt cgacgcgaat gaaagttttt 361 ttgtgcaatc aatatacatc tattatatag tcagtccccc cgccccacaa aactcactgt 421 atgacagtgc tacttctcga ccgcacctcg ctcccagaac ttcttgattt cgtctcgcca 481 acaaagcaca ttgagtgaaa acgagcgagc aatcgaacag ccatcattta tcagagaaaa 541 gacacggatc accggcaaaa aaggaagatt tttaaactga agaggaaaaa gctaagaaac 601 gaggcaaaag aaaataggag aagtaaagga gaagtaaacc aaaaccaaac accaccaaat 661 aaaaccaact actataaatt taaagcaaac ataaacgaat aatcatattc aagcggtata 721 tatatataca agaggataac ggataacaca actaactata tatatatacg atatatgaat 781 gtatatttga aaaccaaagc taagttccag tcaaagagaa aaaccaaaaa ccaaaaacca 841 gcgcaaattt agtaaaagta taaagtaaaa gggaaaaaac caaattattg ctatcttttt 901 gcatttttgc aattttataa aaaataacaa agaaaacgaa aaagaaaaac caaaaaacta 961 caactaaaga tcataataaa ctttaacatt cggagaagca aaaacgaaaa agaacaagta 1021 aacacattta gcaaaattta ctcttttatc taaacgaaaa accaaaaaac acaaatcaaa 1081 gtaaacctaa ttcaagcata aataaaattt taaacgtttt agacagagaa cgctctaaac 1141 ttaacttaaa aagcaaatac atttttttcg cgatcgtagt tgatctaaaa accccctcaa 1201 acccaaagta aatccaaata aaatcggcgg gaagagaaac gagcagttgt gcaaagcgca 1261 gaaaatcgcc gatcagagaa gaataattta taagcgaaaa ccaaccaacc aagcagtgag 1321 attaactact aaccgaaagg actaaatcag gactagagga caggatcaga atcggaatca 1381 gaatcaggat gaccaacgcc atggacatag tgaagaacgg cagtgccaat ggctccgtcg 1441 atggcagcaa tgatgagtcg cgcaccaatt tgatcgtcaa ctatctgccg caaaccatga 1501 cgcaggagga gatgcgatcg ctcttctcca gcatcggtga gctcgagagt tgcaaactgg 1561 tgcgtgataa agtctcagtc ttgccagcat cgttgaccgc tctcaacccg gcactgcagc 1621 aaggtcagag tctgggctat ggctttgtta attacgtaag ggccgaggat gctgagaagg 1681 ctgtgaacac cctgaacggt ctgcgtttgc agaataaggt tattaaagta tcatacgccc 1741 gtccaagctc agaatctatt aagggtgcta atttatatgt atcgggtctt ccgaaaaatc 1801 tatcacaacc agacttggag gggatgtttg cttcgttcgg caaaataatt acatctcgta 1861 tactctgtga taatatttct ggtctatcga agggcgtcgg ttttatccgt ttcgatcagc 1921 gcaacgaagc cgagcgagcc atccaggagc tgaatggcaa gaccccgaag ggctatgccg 1981 aaccgattac cgttaagttt gccaataatc cgagcaatag cgccaaggcc cagatcgccc 2041 cgcccctcac cgcctaccta actccccagg cggcagcggc cacccggcgt ttggccggag 2101 ctctgccctc cgccggtcgc ataaggtact caccgctggc tggcgacctc ttggccaact 2161 cgatcttgcc cggaaacgca atgaccggct cgggatggtg tatattcgtc tacaatttgg 2221 ccccggagac cgaggagaac gtgctgtggc agctgttcgg tcccttcggg gccgttcagt 2281 cggtgaaggt gatccgcgat ctgcagacca gcaagtgcaa gggcttcgga ttcgtcacca 2341 tgaccaacta cgacgaggcc gtggtggcca tccagtcgct gaacggctac accctgggca 2401 atcgggtgct ccaggtcagc tttaagacta acaagaccaa aaccacttag gcgaacccgc 2461 caatctggac tagacctctc caatactcca cgatctgttt gatttgacga cacctagaca 2521 cctagactat agattgatct gatcttatat gatatgatgc gatatgatat gggacaatag 2581 tcgaaattgc gaatattagc gcgagttatg atgtgtctat catttgattt gtacgctaaa 2641 cgaaattatt atgattgtaa ttctaatgaa atcttagtga aaattgattt atttccatct 2701 gtataattta atttaattat ctaaaccaag aaacaaataa caaaaaacga aaaaaaaaaa 2761 caaagcttga atgaggcaac caaaaaacac aacacagaaa ctaaggcaaa ctttagaaaa 2821 aggaagatgt gcaagacaaa tgtctataaa ttgacaaatg agtaaaaaat gagagggaat 2881 aagaagtaaa aataaaagaa aagaaaaaac gaaaaacgat aaataaaaaa ccgcaaaaat 2941 atgaataaca aacgaaaatg atctaagtcg caatatatag taactatttt tttttaacac 3001 ttatgtatat gtaattcaat tcgattatat tcaattaaac aaagtattta aacaagctaa 3061 ccaaatgatt taatgtctat tgatttaaga tttaccaaca taactctctc agcttaccta 3121 agtacttatt ataatggata tgcataaata tattgtattg tattgtattt tgtgttcgtt 3181 ttgcaacctt aacttacatt aacttacctt acattacatt acattaattc tagtgctatt 3241 cagctcttat atttaattcg attcgccatg atttacactc gaagacgaaa cgaaaatcga 3301 agataaagcc gcgatatatc ctccaaacgt aacaagaaaa cccaaaaccc aacccccagc 3361 accgaaaaac acactcacac gtaatcatta ttatatatat gtaaccagat ttaattaccc 3421 ttttttcgtc gtctaagatt tgtattctcg tattcgtcaa gtgcaaacca aagtaaatga 3481 aaccaagaaa acttattata ttatattaaa ttatatatta ttacgcctac ttattattcc 3541 atttttataa ttattataac ttattgaatg caacaaagcg aaacaaaa