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LOCUS XM_017140241 3604 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_017140241 VERSION XM_017140241.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140241.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3604 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3604 /gene="fne" /note="found in neurons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108056446" CDS 1396..2466 /gene="fne" /codon_start=1 /product="ELAV-like protein 1 isoform X1" /protein_id="XP_016995730.1" /db_xref="GeneID:108056446" /translation="MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAV NTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSR ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ IAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIF VYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL NGYTLGNRVLQVSFKTNKTKTT" misc_feature 1462..2457 /gene="fne" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 3604 /gene="fne" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaactagaa actaaaaaag caataaaaaa cgaaaaaaac accgtgcaat tcccgggact 61 cgacttcgat aatcgtgcaa tattatagaa cacttgggaa aagtcgagta gagttgcaat 121 cgctagcaca tacacacaga ccctagtcaa atccccaatt cttttgcatt tttttgcgag 181 tgtgtgcctc gagtgtctga ctatcaacta ctacgcgaga ttcatcagat cccccaatcg 241 tcggcgatat atatatatat actatatagc caggaaatcg ttggacaaag gagcgtgcag 301 gccaaaaaag gagagagaga gagagagcga gcgagcgagt cgacgcgaat gaaagttttt 361 ttgtgcaatc aatatacatc tattatatag tcagtccccc cgccccacaa aactcactgt 421 atgacagtgc tacttctcga ccgcacctcg ctcccagaac ttcttgattt cgtctcgcca 481 acaaagcacg taagtgattg agtgaaaacg agcgagcaat cgaacagcca tcatttatca 541 gagaaaagac acggatcacc ggcaaaaaag gaagattttt aaactgaaga ggaaaaagct 601 aagaaacgag gcaaaagaaa ataggagaag taaaggagaa gtaaaccaaa accaaacacc 661 accaaataaa accaactact ataaatttaa agcaaacata aacgaataat catattcaag 721 cggtatatat atatacaaga ggataacgga taacacaact aactatatat atatacgata 781 tatgaatgta tatttgaaaa ccaaagctaa gttccagtca aagagaaaaa ccaaaaacca 841 aaaaccagcg caaatttagt aaaagtataa agtaaaaggg aaaaaaccaa attattgcta 901 tctttttgca tttttgcaat tttataaaaa ataacaaaga aaacgaaaaa gaaaaaccaa 961 aaaactacaa ctaaagatca taataaactt taacattcgg agaagcaaaa acgaaaaaga 1021 acaagtaaac acatttagca aaatttactc ttttatctaa acgaaaaacc aaaaaacaca 1081 aatcaaagta aacctaattc aagcataaat aaaattttaa acgttttaga cagagaacgc 1141 tctaaactta acttaaaaag caaatacatt tttttcgcga tcgtagttga tctaaaaacc 1201 ccctcaaacc caaagtaaat ccaaataaaa tcggcgggaa gagaaacgag cagttgtgca 1261 aagcgcagaa aatcgccgat cagagaagaa taatttataa gcgaaaacca accaaccaag 1321 cagtgagatt aactactaac cgaaaggact aaatcaggac tagaggacag gatcagaatc 1381 ggaatcagaa tcaggatgac caacgccatg gacatagtga agaacggcag tgccaatggc 1441 tccgtcgatg gcagcaatga tgagtcgcgc accaatttga tcgtcaacta tctgccgcaa 1501 accatgacgc aggaggagat gcgatcgctc ttctccagca tcggtgagct cgagagttgc 1561 aaactggtgc gtgataaagt ctcaggtaat ttggtcttgc cagcatcgtt gaccgctctc 1621 aacccggcac tgcagcaagg tcagagtctg ggctatggct ttgttaatta cgtaagggcc 1681 gaggatgctg agaaggctgt gaacaccctg aacggtctgc gtttgcagaa taaggttatt 1741 aaagtatcat acgcccgtcc aagctcagaa tctattaagg gtgctaattt atatgtatcg 1801 ggtcttccga aaaatctatc acaaccagac ttggagggga tgtttgcttc gttcggcaaa 1861 ataattacat ctcgtatact ctgtgataat atttctggtc tatcgaaggg cgtcggtttt 1921 atccgtttcg atcagcgcaa cgaagccgag cgagccatcc aggagctgaa tggcaagacc 1981 ccgaagggct atgccgaacc gattaccgtt aagtttgcca ataatccgag caatagcgcc 2041 aaggcccaga tcgccccgcc cctcaccgcc tacctaactc cccaggcggc agcggccacc 2101 cggcgtttgg ccggagctct gccctccgcc ggtcgcataa ggtactcacc gctggctggc 2161 gacctcttgg ccaactcgat cttgcccgga aacgcaatga ccggctcggg atggtgtata 2221 ttcgtctaca atttggcccc ggagaccgag gagaacgtgc tgtggcagct gttcggtccc 2281 ttcggggccg ttcagtcggt gaaggtgatc cgcgatctgc agaccagcaa gtgcaagggc 2341 ttcggattcg tcaccatgac caactacgac gaggccgtgg tggccatcca gtcgctgaac 2401 ggctacaccc tgggcaatcg ggtgctccag gtcagcttta agactaacaa gaccaaaacc 2461 acttaggcga acccgccaat ctggactaga cctctccaat actccacgat ctgtttgatt 2521 tgacgacacc tagacaccta gactatagat tgatctgatc ttatatgata tgatgcgata 2581 tgatatggga caatagtcga aattgcgaat attagcgcga gttatgatgt gtctatcatt 2641 tgatttgtac gctaaacgaa attattatga ttgtaattct aatgaaatct tagtgaaaat 2701 tgatttattt ccatctgtat aatttaattt aattatctaa accaagaaac aaataacaaa 2761 aaacgaaaaa aaaaaacaaa gcttgaatga ggcaaccaaa aaacacaaca cagaaactaa 2821 ggcaaacttt agaaaaagga agatgtgcaa gacaaatgtc tataaattga caaatgagta 2881 aaaaatgaga gggaataaga agtaaaaata aaagaaaaga aaaaacgaaa aacgataaat 2941 aaaaaaccgc aaaaatatga ataacaaacg aaaatgatct aagtcgcaat atatagtaac 3001 tatttttttt taacacttat gtatatgtaa ttcaattcga ttatattcaa ttaaacaaag 3061 tatttaaaca agctaaccaa atgatttaat gtctattgat ttaagattta ccaacataac 3121 tctctcagct tacctaagta cttattataa tggatatgca taaatatatt gtattgtatt 3181 gtattttgtg ttcgttttgc aaccttaact tacattaact taccttacat tacattacat 3241 taattctagt gctattcagc tcttatattt aattcgattc gccatgattt acactcgaag 3301 acgaaacgaa aatcgaagat aaagccgcga tatatcctcc aaacgtaaca agaaaaccca 3361 aaacccaacc cccagcaccg aaaaacacac tcacacgtaa tcattattat atatatgtaa 3421 ccagatttaa ttaccctttt ttcgtcgtct aagatttgta ttctcgtatt cgtcaagtgc 3481 aaaccaaagt aaatgaaacc aagaaaactt attatattat attaaattat atattattac 3541 gcctacttat tattccattt ttataattat tataacttat tgaatgcaac aaagcgaaac 3601 aaaa