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LOCUS XM_017140238 3597 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017140238 VERSION XM_017140238.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140238.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3597 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3597 /gene="fne" /note="found in neurons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108056446" CDS 1389..2459 /gene="fne" /codon_start=1 /product="ELAV-like protein 1 isoform X1" /protein_id="XP_016995727.1" /db_xref="GeneID:108056446" /translation="MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAV NTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSR ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ IAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIF VYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL NGYTLGNRVLQVSFKTNKTKTT" misc_feature 1455..2450 /gene="fne" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 3597 /gene="fne" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaactagaa actaaaaaag caataaaaaa cgaaaaaaac accgtgcaat tcccgggact 61 cgacttcgat aatcgtgcaa tattatagaa cacttgggaa aagtcgagta gagttgcaat 121 cgctagcaca tacacacaga ccctagtcaa atccccaatt cttttgcatt tttttgcgag 181 tgtgtgcctc gagtgtctga ctatcaacta ctacgcgaga ttcatcagat cccccaatcg 241 tcggcgatat atatatatat actatatagc caggaaatcg ttggacaaag gagcgtgcag 301 gccaaaaaag gagagagaga gagagagcga gcgagcgagt cgacgcgaat gaaagttttt 361 ttgtgcaatc aatatacatc tattatatag tcagtccccc cgccccacaa aactcactgt 421 atgacagtgc tacttctcga ccgcacctcg ctcccagaac ttcttgattt cgtctcgcca 481 acaaagcaca ttgagtgaaa acgagcgagc aatcgaacag ccatcattta tcagagaaaa 541 gacacggatc accggcaaaa aaggaagatt tttaaactga agaggaaaaa gctaagaaac 601 gaggcaaaag aaaataggag aagtaaagga gaagtaaacc aaaaccaaac accaccaaat 661 aaaaccaact actataaatt taaagcaaac ataaacgaat aatcatattc aagcggtata 721 tatatataca agaggataac ggataacaca actaactata tatatatacg atatatgaat 781 gtatatttga aaaccaaagc taagttccag tcaaagagaa aaaccaaaaa ccaaaaacca 841 gcgcaaattt agtaaaagta taaagtaaaa gggaaaaaac caaattattg ctatcttttt 901 gcatttttgc aattttataa aaaataacaa agaaaacgaa aaagaaaaac caaaaaacta 961 caactaaaga tcataataaa ctttaacatt cggagaagca aaaacgaaaa agaacaagta 1021 aacacattta gcaaaattta ctcttttatc taaacgaaaa accaaaaaac acaaatcaaa 1081 gtaaacctaa ttcaagcata aataaaattt taaacgtttt agacagagaa cgctctaaac 1141 ttaacttaaa aagcaaatac atttttttcg cgatcgtagt tgatctaaaa accccctcaa 1201 acccaaagta aatccaaata aaatcggcgg gaagagaaac gagcagttgt gcaaagcgca 1261 gaaaatcgcc gatcagagaa gaataattta taagcgaaaa ccaaccaacc aagcagtgag 1321 attaactact aaccgaaagg actaaatcag gactagagga caggatcaga atcggaatca 1381 gaatcaggat gaccaacgcc atggacatag tgaagaacgg cagtgccaat ggctccgtcg 1441 atggcagcaa tgatgagtcg cgcaccaatt tgatcgtcaa ctatctgccg caaaccatga 1501 cgcaggagga gatgcgatcg ctcttctcca gcatcggtga gctcgagagt tgcaaactgg 1561 tgcgtgataa agtctcaggt aatttggtct tgccagcatc gttgaccgct ctcaacccgg 1621 cactgcagca aggtcagagt ctgggctatg gctttgttaa ttacgtaagg gccgaggatg 1681 ctgagaaggc tgtgaacacc ctgaacggtc tgcgtttgca gaataaggtt attaaagtat 1741 catacgcccg tccaagctca gaatctatta agggtgctaa tttatatgta tcgggtcttc 1801 cgaaaaatct atcacaacca gacttggagg ggatgtttgc ttcgttcggc aaaataatta 1861 catctcgtat actctgtgat aatatttctg gtctatcgaa gggcgtcggt tttatccgtt 1921 tcgatcagcg caacgaagcc gagcgagcca tccaggagct gaatggcaag accccgaagg 1981 gctatgccga accgattacc gttaagtttg ccaataatcc gagcaatagc gccaaggccc 2041 agatcgcccc gcccctcacc gcctacctaa ctccccaggc ggcagcggcc acccggcgtt 2101 tggccggagc tctgccctcc gccggtcgca taaggtactc accgctggct ggcgacctct 2161 tggccaactc gatcttgccc ggaaacgcaa tgaccggctc gggatggtgt atattcgtct 2221 acaatttggc cccggagacc gaggagaacg tgctgtggca gctgttcggt cccttcgggg 2281 ccgttcagtc ggtgaaggtg atccgcgatc tgcagaccag caagtgcaag ggcttcggat 2341 tcgtcaccat gaccaactac gacgaggccg tggtggccat ccagtcgctg aacggctaca 2401 ccctgggcaa tcgggtgctc caggtcagct ttaagactaa caagaccaaa accacttagg 2461 cgaacccgcc aatctggact agacctctcc aatactccac gatctgtttg atttgacgac 2521 acctagacac ctagactata gattgatctg atcttatatg atatgatgcg atatgatatg 2581 ggacaatagt cgaaattgcg aatattagcg cgagttatga tgtgtctatc atttgatttg 2641 tacgctaaac gaaattatta tgattgtaat tctaatgaaa tcttagtgaa aattgattta 2701 tttccatctg tataatttaa tttaattatc taaaccaaga aacaaataac aaaaaacgaa 2761 aaaaaaaaac aaagcttgaa tgaggcaacc aaaaaacaca acacagaaac taaggcaaac 2821 tttagaaaaa ggaagatgtg caagacaaat gtctataaat tgacaaatga gtaaaaaatg 2881 agagggaata agaagtaaaa ataaaagaaa agaaaaaacg aaaaacgata aataaaaaac 2941 cgcaaaaata tgaataacaa acgaaaatga tctaagtcgc aatatatagt aactattttt 3001 ttttaacact tatgtatatg taattcaatt cgattatatt caattaaaca aagtatttaa 3061 acaagctaac caaatgattt aatgtctatt gatttaagat ttaccaacat aactctctca 3121 gcttacctaa gtacttatta taatggatat gcataaatat attgtattgt attgtatttt 3181 gtgttcgttt tgcaacctta acttacatta acttacctta cattacatta cattaattct 3241 agtgctattc agctcttata tttaattcga ttcgccatga tttacactcg aagacgaaac 3301 gaaaatcgaa gataaagccg cgatatatcc tccaaacgta acaagaaaac ccaaaaccca 3361 acccccagca ccgaaaaaca cactcacacg taatcattat tatatatatg taaccagatt 3421 taattaccct tttttcgtcg tctaagattt gtattctcgt attcgtcaag tgcaaaccaa 3481 agtaaatgaa accaagaaaa cttattatat tatattaaat tatatattat tacgcctact 3541 tattattcca tttttataat tattataact tattgaatgc aacaaagcga aacaaaa