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LOCUS XM_017140216 5308 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017140216 VERSION XM_017140216.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140216.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5308 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5308 /gene="Sik2" /note="Salt-inducible kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056427" CDS 439..4683 /gene="Sik2" /codon_start=1 /product="serine/threonine-protein kinase par-1" /protein_id="XP_016995705.2" /db_xref="GeneID:108056427" /translation="MSACEAAAAGKEDGLPTHAKCEAKESQPPEDQQKKQQQPQEKHE KHEKHERHEKHEKQAEKQEQLPQNGSTETEVAEKPSQLEAIRSSVLLDGSAAAPSIDA LVACKDALLAQKLFAAAGPSPTSSAMGPGGVSGKELLKLKEPMRVGFYDIERTIGKGN FAVVKLARHRITKNEVAIKIIDKSQLDQTNLQKVYREVEIMKRLKHPHIIKLYQVMET KNMIYIVSEYASQGEIFDYIAKYGRMSESAARYKFWQIISAVEYCHKKGIVHRDLKAE NLLLDLNMNIKIADFGFSNHFKPGELLATWCGSPPYAAPEVFEGKQYTGPEIDIWSLG VVLYVLVCGALPFDGSTLQSLRDRVLSGRFRIPFFMSSECEHLIRRMLVLEPTRRYTI EQIKRHRWMCPELLEHVLIAKYNLGAERQAALEPSEDILRIMAEYVGIGPDKTRASLK KNTYDHVAAIYLLLQDRVSHKKEQSNGSTASSRMLYKSTKIDQPPQHPQQQQSKTIST SSILAKDQAHKRLSRHQTVLMSERTTPTVPDPGYYAKYGPLQLPLPHMAGYLNGGGGG PPVEVDAAGMALPMRYTPLPTAASPAPSNCSSSASSRVGRHSLSSSSPRSHRPVAISL SIDHNPSLANLRCREMMMEQGGAGGGAGGAGAPGVPLVSKQLHQTISEYIIKQSTEDC RALLQQSTAVAEGKEEPPAKGEAAAPPAGTTTPTTSTSTSTQGPPGSGSCPGEMNSGS GKTIKAMSSSSSFDSKANLGQSFRYKMSAEASKLFQTLQESPLPVEQRAKRRGQVAST NGSGGDSGQETNEPKSNGERQEKKVLAQGSSSTDEGCETDQGNEPGSASQESKAASGG PTSHSSSDLTHLGGATASGQSHRMRSYASSSSSSGVLAGSAGSYSKSLSQNLSRGSSK SNCSAPYDSLDFALPSGKGSLPSCMGSSSMLATPTPASASPAAISSEHSSERSLYGSH SSCIHMPGLGLGMGLGLGLPQSSASTPTPNPTPPPPQPNGGGVPFLDKRSPIHFREGR RASDGLVAQGLLSSGSLLGTSRVYGSYRYEQAKRHGWLEIQQLQQEAAVGHPHPHHHP QHHPHPHQHPHPHPQAYGLEELCQFPNGQFYALPGKHHPLLTLPHHHGQHPGQHLHGH QHPLFHAGHQATPLLLEAVPGAGEVYGHGCYAPPPPPPGLYPHHPLGVGVGVAVPMSP MQKPPLQQQLLQHRLLQQKRQLFQKQYALEAQLASRHHHQHSHHQQQHHFNHSLGHPP PPAPAPEHHHHHHLADELYELALLERPRSGTPRLQHSMTMPGAHAFSQMNLKTSYISQ SDQPSNGGGGGGGGASGSGGGSAASGASCSASPSTAPGTPTVKCKPSTPHGHSLESDY HTSTPVLSLFAPNWQSLVKPLSESPILEISEHLESV" misc_feature 883..1641 /gene="Sik2" /note="Catalytic domain of the Serine/Threonine Kinases, Salt-Inducible kinases; Region: STKc_SIK; cd14071" /db_xref="CDD:270973" misc_feature order(904..918,928..930,967..969,973..975,1066..1068, 1114..1125,1135..1137,1141..1146,1150..1152,1249..1254, 1258..1260,1264..1269,1273..1275,1303..1308,1315..1317, 1354..1371,1375..1377,1465..1476,1480..1482) /gene="Sik2" /note="active site" /db_xref="CDD:270973" misc_feature order(904..915,928..930,967..969,973..975,1066..1068, 1114..1125,1135..1137,1264..1269,1273..1275,1303..1308) /gene="Sik2" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270973" misc_feature order(1135..1137,1141..1146,1150..1152,1252..1254, 1258..1260,1264..1266,1315..1317,1354..1371,1375..1377, 1465..1476,1480..1482) /gene="Sik2" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270973" misc_feature 1303..1371 /gene="Sik2" /note="activation loop (A-loop); other site" /db_xref="CDD:270973" misc_feature 1717..1839 /gene="Sik2" /note="UBA domain found in salt-inducible kinase SIK1, SIK2, SIK3 and similar proteins; Region: UBA_SIK; cd14338" /db_xref="CDD:270523" polyA_site 5308 /gene="Sik2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gggattggag gcagccacgt ttcccagcca tccgccgtgt gagtcgcagc gaccgtgttt 61 gtgtgttttt tccgttccgt gccgcatctg tggcgttccg cgaacgggat gtaaagcgga 121 tctccgccag cgttcatcct ctcatcgcca tctaccggat tcagttgctc cgccagggct 181 gaggtcccag ctctgctcct ttcctgctcg aaacttcttc aacttctttg tcagccggcg 241 acgcttgtgc tttctgcgcc accactgaat aacgaagcac tgccatgggg caggagatgt 301 gtgcgttccg tgtgagcatg tgcatcatca tctcgctgtc gatcggaatc ggaatcgcaa 361 tctcaatctc ccactctccc gggcactcgc tctccgtgtg agtctccatt tccccgccca 421 gggtggcgca gttggaaaat gagcgcgtgc gaggcggcgg ccgccggcaa ggaggatggg 481 ctcccgaccc atgccaagtg cgaggccaag gagagccagc cgccggagga tcagcagaag 541 aagcagcagc agccgcagga gaagcacgaa aagcacgaga agcacgagag gcacgagaag 601 catgagaagc aggcggagaa gcaggagcag cttccccaga atgggagcac cgaaacggag 661 gttgcagaga agcccagcca actggaggcc atccggagct ccgttctgct ggacggaagt 721 gcggctgctc cctcgataga cgcactggtg gcctgcaagg atgccctgct cgcccagaag 781 ctcttcgctg cggccggacc cagtcccacc tcctcggcga tgggacccgg cggcgtctcc 841 ggcaaggagc tgctcaagct caaggagccc atgcgcgtgg gcttctacga catcgaacgc 901 accatcggca agggcaactt cgccgtggtc aagctggccc gccaccggat caccaagaac 961 gaggtggcta tcaagatcat cgacaagtcg cagctggacc agacgaacct ccagaaggtc 1021 taccgcgagg tggagatcat gaagcgcctg aagcatccgc acatcatcaa gctctaccag 1081 gttatggaga ccaagaatat gatctacata gtgtcggagt atgccagcca gggcgagatc 1141 tttgactaca tagccaagta cggccggatg tccgagtcgg cggcccgcta caagttctgg 1201 cagatcatct cggcggtgga gtactgccac aagaagggca tcgtgcaccg cgacctgaag 1261 gcggagaacc tgctcctgga cctcaacatg aacatcaaga tcgcggactt tggcttctcg 1321 aatcacttca agccgggcga gctgctggcc acctggtgcg gatcgccgcc ctacgccgct 1381 cccgaggtct tcgagggcaa gcagtacacg ggtccggaga tagatatttg gtccctgggc 1441 gtggtgctct atgtgctggt ctgcggggcc ctgcccttcg acggctccac gctgcagagc 1501 ctccgggatc gggtgctctc cggccgcttc cgcataccgt tcttcatgag ctccgagtgc 1561 gagcacctca tccggcgcat gctcgtgctg gagcccacgc ggcgctacac catcgagcag 1621 atcaagcggc accgctggat gtgccccgag ctgctggagc acgtcctgat agccaagtac 1681 aacctgggcg ccgagcggca ggcggccctg gagcccagcg aggacatcct gcgcatcatg 1741 gccgagtacg tgggcattgg gcccgacaag acgcgggcca gcctcaagaa gaacacctac 1801 gaccatgtgg cggccatcta cctgctgctc caggatcgcg tcagtcacaa gaaggagcag 1861 agcaatgggt caactgcctc cagtcggatg ctctacaaga gcaccaagat cgatcagcct 1921 ccccagcatc cccagcagca gcagtccaag acaatatcca ccagctcgat cctggccaag 1981 gatcaggccc acaaaagact tagccgccac cagacggtgc tcatgagtga gcgaaccacg 2041 cccactgtcc cggatcccgg ctactacgcc aagtacggcc ccctgcaact gccactgccc 2101 cacatggcag ggtatctcaa cggaggagga ggaggtcccc ccgtggaggt ggatgccgcc 2161 ggaatggccc tgcccatgcg gtacacgccc ctgccgacgg ccgcctcgcc cgccccctcc 2221 aactgctcct cctccgcctc ctcgcgggtg ggccggcaca gcctgagctc cagctcgccc 2281 aggagtcatc gcccggtggc catttcgctg agcatcgacc acaatccctc gctggccaac 2341 ctgcggtgcc gggagatgat gatggagcag ggaggagcag gaggaggagc aggaggagca 2401 ggagcaccgg gagtgccgct ggtgtccaag cagctccacc agaccatcag cgagtacatc 2461 atcaagcaga gcaccgagga ctgccgggcg ctgctgcagc agtccacagc ggtggccgag 2521 ggcaaggagg agccgccggc gaagggggaa gcagctgctc cccctgccgg caccaccacg 2581 cccaccactt ccacttccac ctccacccag ggaccaccgg gatcgggctc ctgccccggc 2641 gagatgaaca gcggcagcgg caagacaata aaggccatgt ccagctcgag cagcttcgac 2701 tccaaggcca atctcggcca gagcttccgc tacaagatgt ccgcggaggc cagcaagctg 2761 ttccagaccc tccaggagag cccgctgccc gtggagcaac gggccaagcg acgtggccag 2821 gtggccagta ccaacggcag tggcggcgac tctggccagg agacgaacga gccgaaatca 2881 aacggggagc ggcaggagaa gaaggtgctg gcccagggca gctccagcac ggacgagggc 2941 tgcgagacgg accagggcaa cgagccgggc tccgcctcgc aggagtcaaa ggccgccagc 3001 ggtggaccca cctcgcactc cagcagcgat ctgacccacc tgggcggagc cactgcctcg 3061 gggcagagcc accggatgcg ctcctatgcc agcagcagct cctccagcgg cgtcctcgcc 3121 ggcagtgcgg gcagctactc gaagagtctc agccagaatt tgagtcgtgg ctcctcgaag 3181 agcaactgca gcgcgcccta cgacagcctg gacttcgccc tgccctccgg caagggcagc 3241 ctgccctcgt gcatgggctc cagctccatg ctggccacgc ccacgccggc ctccgcctcg 3301 ccggcggcca tctcctcgga gcattcgtcg gagaggtcgc tgtacgggag ccacagctcc 3361 tgcatccaca tgccgggatt gggattggga atgggattgg gattgggtct gccgcagagc 3421 tctgcctcca cgcccacgcc gaatcccacg ccaccgcccc cgcagcccaa cggaggcgga 3481 gtgccgttcc tggacaagcg atcgcccatt cacttccgcg agggacgacg ggcgagcgac 3541 gggctggtgg cccagggact cctcagctcc ggctccctgc tgggcaccag tcgggtctac 3601 ggaagctatc gctacgagca ggccaagcgg cacggctggc tggagatcca gcagctgcag 3661 caggaggcgg cagtgggtca tccgcatccg catcaccatc cgcaacacca tcctcatcct 3721 caccagcatc cccatccgca tccacaggcc tacggcttgg aggaactctg tcaatttccg 3781 aacggtcaat tctacgctct gcccggcaag catcatccgc tgctgacgct gccccaccac 3841 catggccagc atcctggcca gcacctccat ggccaccagc acccgctgtt ccacgcgggt 3901 caccaggcca cgcccctgct gctggaggct gttcccggtg ccggggaggt gtacggccat 3961 ggctgctatg ctccgccacc gccgccaccg ggtctctatc cgcatcatcc tttgggcgta 4021 ggtgtgggcg tggccgtgcc catgtcgccg atgcagaagc caccgctgca gcagcagctc 4081 ctgcagcacc gcctgctgca gcagaagcgc cagctcttcc agaagcagta cgccctggag 4141 gcccagctgg ccagtcgtca tcatcatcag catagtcatc accagcagca gcaccacttc 4201 aaccacagcc tggggcatcc acctccgccg gctcctgcac cggagcacca tcaccaccac 4261 cacctggccg acgagctgta cgagttggcc ctgctcgagc gacccaggag cggaacaccc 4321 cggctgcagc actccatgac catgccggga gcgcatgcct tcagccagat gaacctcaag 4381 acctcctaca tcagtcaatc ggatcagccg tcgaatggag gtggtggtgg aggaggagga 4441 gctagtggtt ccgggggagg atctgctgca tccggggcct cctgctcagc gtctccgtcc 4501 accgcgccgg gcacgcccac ggtcaagtgc aagccgagca cgccccacgg gcacagcctg 4561 gagtcggact atcatacatc gacgcccgtg ctcagcctgt ttgcgcccaa ctggcagtcg 4621 ctggtgaagc cgctcagcga gagtcccatc ctggagatat cggagcacct ggagtccgtc 4681 tagggagcag atggcatggg gatgcatcca actaacgggg accgcgtcgg ggtcaccttt 4741 ttattaagct cgcattcgca attacgaatt atttgatcca tatacgatat acacccacat 4801 acatacatat acatagccta tacaagttcg tatacctaaa cagatatgga tgcggattag 4861 gattgggatg aggatttcat cgaatcaagc taaccgatcc gaaccgtaat attggaagat 4921 ttagttgtgt tactagcctt aagtagtcca agtttcgtac gcatacacgc agacatatac 4981 aatatgtata ttgataataa tagcgttaag ctatagctct acttatgatt acactataca 5041 ctatacacta ttgtattgcc cccgcgacag gacagtcgga gttcggagtt cgaaattcgg 5101 agttcagagt taagagttca gagttcagaa ttcagaattt agaattcgga gttgggtgga 5161 tgagaacaac gtaactacat atatcaatta ttcgaagcat ttattggggg catagatagg 5221 gtatatccat atatggatat atctattatg tattggtaca ataattagcg acaagcaaaa 5281 aaaaaaaaaa aagaaaacaa aactaaaa