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LOCUS XM_017140210 3748 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017140210 VERSION XM_017140210.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140210.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3748 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3748 /gene="Vinc" /note="vinculin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056424" CDS 211..3096 /gene="Vinc" /codon_start=1 /product="vinculin" /protein_id="XP_016995699.2" /db_xref="GeneID:108056424" /translation="MPVFHTKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQ VVSLAVANLVKVGRETINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGP ARKKLIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVINTMEQLVQFL KDLSPCLSKVHREVGGREKELTHQVHSEILVRCLEQVKTLAPILICSMKVYIHIVEQQ GRGAEEAAENRNYLAARMSDELQEIIRVLQLTTYDEDTSELDNLTVLKKLSNAISNKM ELANEWLSNPYALRGGVGEKALRQVIDNAAEISERCLPQDSYPIRKLADEVTAMANTL CELRQEGKGQSPQAESLARGIRDRLGELQSLVHQAVLGVDKAGVQQTAHTIQGRLEQA VKWLQHPEINDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGS GPAAKVAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGRE QNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSSAAQVDSLTPQLISAGR IRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAKLCE DAIHARQPQKMVDNTSNIARLINRVLLVAKQEADNSEDPVFTERLNAAANRLERSLPA MVGDAKLVATNIADPAAAAAWKNSFQRLLGDVREVREAIAPPQPPPLPTSLPPPIPEL SALHLSNQNAERAPPRPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARG LHQEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIAEASEDV TRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATMLGAQGSDEDREATE MLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRLQWVRRQPWYQY" misc_feature 217..3090 /gene="Vinc" /note="Vinculin family; Region: Vinculin; pfam01044" /db_xref="CDD:460040" polyA_site 3748 /gene="Vinc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgagtgtgtg tgtgtgtgcg cgccccccaa tcgaaatctt tttttagtat tgaaagaaca 61 gtcgggcaag aaagttgggg cgcagcaaaa tcgagccaga caaattaact agagatctgg 121 cccacaagaa aaagaaagag agagagagag agaggaaagt gagataaaca aactgaaaaa 181 gaaggaagcg ccaaagcaaa agaaatcaaa atgcccgtct tccacacaaa aaccatcgag 241 agcattctag atcctgtcgc ccagcaggta tctcgtctgg tcatcctgca cgaggaggcc 301 gaggacggca acgcgatgcc ggacctcagc aggccggtgc aggtggtctc gctggcggtg 361 gccaacctgg tgaaggtggg ccgcgagacg atcaacagct ccgacgacaa gatcctgcgc 421 caggacatgc cctcggcatt gcaccgcgtg gagggtgcct cgcagctgct ggaggaggcg 481 tccgatatgc tccgctccga tccctactcc ggaccggcgc gcaagaagct aatcgagggt 541 agccgcggca tcctgcaggg cacctcctcg ctgctgctct gcttcgacga gagcgaggtg 601 cgcaagatca tccaggagtg caagcgggtg ctcgactacc tggccgtcgc cgaggtgatc 661 aacacgatgg agcagctggt gcagttcctc aaggacctct cgccgtgcct cagcaaggtg 721 caccgcgagg tgggcggtcg cgagaaggag ctgacccacc aggtgcacag cgagatcctc 781 gtccgctgcc tggagcaggt caagaccctc gcgcccatac tcatctgcag catgaaggtc 841 tacatccaca tcgtggagca gcagggccgc ggagccgagg aggcggccga gaacaggaac 901 tatttggccg ccaggatgag cgacgagctg caggagatca tccgcgtgct gcagctgacc 961 acctacgacg aggacaccag cgagctggac aacctcacag tgctgaaaaa gctctcgaac 1021 gccatctcca acaagatgga gctggcgaac gagtggctct cgaatcccta cgccctgcgc 1081 ggcggcgtcg gcgagaaggc gctgcgccag gtgatcgaca acgccgccga gatctcggag 1141 cgctgcctgc cccaggactc gtaccccatc cgcaagctgg ccgacgaggt gacggccatg 1201 gcgaacactt tgtgtgaact ccggcaggag ggcaagggtc agagtcccca ggcggagtca 1261 ctggcccgcg gcattcgcga tcgcctgggc gaactgcagt ccctcgtcca ccaggcggtg 1321 ctcggagtgg acaaggccgg cgtccagcag actgcccaca ccatccaggg tcgcctggag 1381 caggctgtca agtggctgca gcacccggag atcaacgacg gcggcctcgg cgagcgggcc 1441 atcaacctga tcgtcgagga gggccgcaag gtggccgagg gctgcccggg ccaccagaag 1501 gccgagatcc agcagctgtg cgacgaggtg gagcgcctca agcgccaggc ggccggctcg 1561 gggccagcgg ccaaggtggc cgccaagcag ctcacccaga agctctacga gctgaaggcg 1621 gccatccaga atgcgctggt caaccgcatc gtgcaggact tcatggacgt gagcacgccg 1681 ttgaagcaat tcaccgaggc ggtgctccag ccggagggaa cgcccggccg cgagcagaac 1741 ttcaaccaga agtccaacaa cctgcaggcc ttcagcgatc gcgcctcgaa gacctcgcga 1801 atggtggccg ctggaggagc ctgcggcaac aagaagatcg ccgagatcct gctctcctcc 1861 gccgcccagg tggactcgct gaccccgcag ctcatcagcg ccggccgcat ccggatgaac 1921 tacccgggca gcaaggccgc cgacgagcat ctgcagaacc tcaagcagca gtacgccgac 1981 acggtgctgc gcatgcgcac gctctgcgac caggccaccg atccggcgga cttcatcaag 2041 acctccgagg agcacatgca ggtgtatgcc aagctctgcg aggacgccat ccacgcaagg 2101 cagccgcaga agatggtgga caacacctcg aacatagcgc gtctgatcaa tcgggtgctt 2161 ttggtggcca agcaggaggc ggataactca gaggatccgg tgttcacgga gcgcctaaat 2221 gcggccgcca atcggctgga gcgatcgctg cccgccatgg tgggcgatgc caagctggtg 2281 gccaccaata tagcggatcc ggcggcggcg gccgcctgga agaactcctt ccagcggctg 2341 ctgggcgatg tacgcgaggt gagggaggcc atagcgccgc cgcagccgcc gccgctgccc 2401 acctccctgc cgccgcccat tccggagctg agcgccctgc atctgtccaa ccagaatgct 2461 gagcgcgctc caccgcgccc accgctgccc agggagggac tggcgccagt gcgtccgccg 2521 cccccggaaa cggatgacga ggacgagggc gtcttccgca cgatgccgca tgccaatcag 2581 cccatcctga tcgccgcccg tggcctccac caggaggtgc gccagtggtc gtccaaggac 2641 aacgagatca tcgccgccgc caagcgcatg gccatcctga tggcccgact cagcgagctg 2701 gtgctctccg attcgcgggg cagcaagcgg gagctgatcg ccaccgccaa gaagatcgcc 2761 gaggcctccg aggacgtgac ccggctggcc aaggagctgg cccgccagtg caccgatcgc 2821 aggatccgca ccaatctgct gcaggtctgc gagcgcatcc ccaccatcgg cacccagctc 2881 aagatcctct ccacggtcaa ggccaccatg ctgggcgccc agggatccga cgaggatcgc 2941 gaggccaccg agatgctggt gggcaatgcc cagaacctca tgcagagcgt gaaggagaca 3001 gttcgtgccg ccgagggagc cagcatcaag atccgatcgg atcagaccag caatcggctg 3061 cagtgggtgc gccggcagcc gtggtaccag tactagatgg tataggggtg ccttaccatg 3121 ggatgcctta ccatgggata ttaacagagc gagggaccct cggatccgca tccgcccacc 3181 tgccacgcgc cttgtgtaac atacaaagct aaacactaat cttaatggtt tctattttaa 3241 atgttaatcg cctaatctgt tccatctaaa attcagttat ttaagtgcct gcaactattt 3301 attatgtccc cccggaaaag tacttgtgct catgtccccc gcccgcccga ttctgttcta 3361 tatttttgtt ttcgataatt gtaaaattaa ttattaagcg tgcaataaaa aagagaaatg 3421 aaaaaaagta aggaaatgaa aaggaaagca atatgtacat acaggcagtc agatttaagc 3481 gaatgcaatg tatataataa gtgaccagag ttcaaggaat ttcaaatttc caatcgcatc 3541 ccctcctttg tatttgtagt gtactaacag aagcatttaa accatagagt cccgtttgtt 3601 tgaaatgttt gcaaatgttc gaaatgtcta actcactaaa acagcaggga aaacaactgc 3661 tgaaagccca aacatgtaac ccaaaaaagc gatgtgtgtc atgttcaata catatataat 3721 tgaaataaaa ctgaatttcg ggccttaa