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LOCUS XM_017140170 5175 bp mRNA linear INV 09-DEC-2024 non-receptor type corkscrew (csw), transcript variant X5, mRNA. ACCESSION XM_017140170 VERSION XM_017140170.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140170.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5175 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5175 /gene="csw" /note="protein tyrosine phosphatase non-receptor type corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056393" CDS 260..2407 /gene="csw" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X5" /protein_id="XP_016995659.2" /db_xref="GeneID:108056393" /translation="MIRWQDKKYDVGGGESFATLSELIDHYKRNPMVETCGTVVHLRQ PFNATRITAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNI LPYDHTRVKLLDVEPSVVGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTA AQTQRNCSNCQLLNKTCVQCAVKSATLPYNNCATCSRKSDSLSKHKRSESSASSSPSS GSSGSSGSSGASGAGSVNGPGTPTNLTGGTAGCLAGLLKKHSSDSSSYGSGSGSASGF MSMAEREREREREMFKTYIATQGCLLSPQVNTVTDFWNMVWQENTRVIVMTTKEYERG KEKCARYWPDEGRTEQFGPARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVW PDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILD QIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQS LQVGREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPLTPPSADSGMGMSMGMVM GVVGNKHASKQQPPLPVASCNNNNNGSGSGNSCSNGSNSSSNNGSNSMSNGGGSSNSS NGNINALLGGIGLNMRKSNFYSDSLKQQQQQQQQQQQMQQQQQREEQATAPAGAGKIQ QQPAPPLRPRPGILKLLTSPVIFQQNTKTFPKT" misc_feature <260..403 /gene="csw" /note="Src homology 2 (SH2) domain; Region: SH2; cl15255" /db_xref="CDD:472789" misc_feature 536..1750 /gene="csw" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" polyA_site 5175 /gene="csw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtttgtaat tgcattttga gcgcacacgt agtcgccagt cgagcactca gtcagtcagt 61 cagtcaatcg ctcagttagc tcagtttatt cagtggatgt gccatcgatc gatggtttca 121 tggcaatctt tccggcaagg aagcggaaaa attgatcctg gagcgaggca agaatggttc 181 gtttctcgtc cgtgaatctc agagcaagcc tggcgatttc gtcctctccg tgcggacgga 241 cgacaaagta acgcatgtca tgattcgatg gcaggacaag aagtacgatg tcggcggcgg 301 cgaatcgttt gccactctgt cggaactaat agatcactac aagcgtaatc ccatggtgga 361 gacgtgtgga acggtggtgc atctgcggca acccttcaac gccacccgaa tcacggcggc 421 cggaataaat gcccgggtgg aacagctggt caagggaggt ttctgggagg agttcgagtc 481 gctgcagcag gacagtcggg ataccttctc gcgcaacgag ggctacaagc aggagaaccg 541 cctgaagaac cgctaccgga acatattgcc ctacgaccac acgcgcgtca agctgctgga 601 cgtggagccc agcgtggttg gggccgagta catcaatgcc aactacatac gcctgcccac 661 cgacggcgat ctgtacaaca tgagcagctc gtcggagagc ctcaatagct cggtgccctc 721 gtgccccgcc tgcacggcgg cccagacgca acggaactgc tccaactgcc agctgctgaa 781 caagacctgc gtccagtgcg ccgtgaagag cgccacgctg ccgtacaaca actgtgccac 841 ctgcagccgc aagtcggact cgctgagcaa gcacaagcgc agcgagtcct cggcctcctc 901 ctcgccctcc tccggctcct cgggctcctc gggatcgtcg ggggccagcg gagcgggcag 961 cgtcaacgga cccggcacac ccaccaatct cacgggcggc acagccggct gtctggccgg 1021 actgctcaag aagcactcga gcgactcgtc ctcctacgga tcgggatccg gatccgcatc 1081 cggcttcatg tcgatggccg aacgggagcg ggaaagggag cgcgagatgt tcaagacata 1141 catcgccacc cagggatgcc tgctgtcgcc gcaggtgaac acggtgacgg acttctggaa 1201 catggtgtgg caggagaaca cgcgggtgat tgtcatgacc accaaggagt acgagcgcgg 1261 caaggagaag tgcgcccgct actggccgga cgagggacgg acggagcagt tcggtccggc 1321 gcggatacag tgcgtctcgg agaactcgac gagtgactac acgctgcgcg agttcctcgt 1381 ctcgtggcgg gatcagccgg cgcgccggat cttccactac cacttccagg tgtggcccga 1441 tcacggggtg cccgccgatc cgggctgtgt gctcaacttc ctgcaggacg tcaacacgcg 1501 acagagtcac ctggcgcagg caggcgagaa gccgggtccc atctgtgtgc actgctcggc 1561 gggcatcgga cgcaccggca ccttcatagt gatcgacatg atcctcgacc agatcgtgcg 1621 caatggcttg gataccgaga tagacattca gcgcaccatc cagatggtcc ggtcgcagcg 1681 ttccggcctc gtgcagacgg aggcccagta caagttcgtc tactatgcgg tgcagcacta 1741 catccagacc ctgatcgccc gcaaaagggc cgaggagcag agcctgcagg ttggccggga 1801 gtacaccaat ataaagtaca cgggcgaaat tggcaacgat tcacaaagat ctccattacc 1861 accagcaatt tctagcataa gtttagtacc aagtaagacg ccattgacgc cgccgtcggc 1921 ggattcgggc atggggatga gcatgggcat ggtcatgggc gtcgtgggca acaagcatgc 1981 ctccaagcag cagccgccgt tgccggtggc tagctgcaac aacaacaaca atggcagtgg 2041 cagtggcaat agctgcagca acggcagcaa cagcagcagc aacaacggca gcaacagtat 2101 gagcaacgga ggcggcagca gcaacagcag caacggcaac atcaatgccc tgctgggcgg 2161 aatcggcttg aatatgcgca agtcgaactt ttacagcgac tcgctgaagc agcagcagca 2221 acagcagcag caacagcagc agatgcaaca gcaacagcaa cgcgaggagc aggcgactgc 2281 tccggcggga gcaggtaaga tccagcagca gccggcgccg ccgctgcgac cgcgtcccgg 2341 catactcaag ttgctcacca gtcccgtcat ctttcagcaa aatacaaaaa cattcccaaa 2401 gacatgatcg gcctgcgaac gccgagccat gcgcctgcgt tgccgccgcc gccgacgccg 2461 ccgcgcaaaa catgacaaat gaatttctaa gtcgcgacgc ccttgacacg cccccatgat 2521 accatgatac catgatacca tgatagcccc ccacacgcac acagaccaca agtggatttc 2581 atttaaagag tcaccctgcc gccgcaaaaa aacccaaacc caaaacccga aacccttgac 2641 tatgttttac tgttgtacca agttctactt tttttttttt ctattaattg taatctatat 2701 acttttttgt aatattgtgt gtaatgctta gttgtacgtt attgtctcgc tttatgctgt 2761 aagtgttccc tgcacacgca aagcagtaac cccaccacca gcctaaaccc aaaacccaaa 2821 accccaggca tatttatgta gtagtttttt aagagagccc ccctgcccca aaaaaccgga 2881 aattgaagat acaatctggg cggaactgca gcagatccgc caaaaaaaaa caaaaaacaa 2941 aagaaaccca tttttaagaa gaatcgcagc ggttcgccgt tcccagttcc atagcgcttg 3001 aatttggcgg aatttttgaa aattattcgc catagagttg aactgtgtcc tatgccaaaa 3061 tttccctatt tcgaatttta cggattcaaa tgagtagtat ttcttttttg agcatcaatg 3121 gtttcaagcc agaatttcaa tttttttttt cgatattttt acatttttca aaaactcttt 3181 attgaaaagt tcgatttcca aaagaaagtg aattccaact ccgtcaaatc aaatcaagtt 3241 tttagtgttg taagtgttga caaaatcgga agaggaggag ttagaggtaa cgataatgat 3301 acaaaaaaaa aagcgttgat tgtgattcga gtgacagcga gaacagaaac agaaacagat 3361 acaaaaagag ttacagaagc aggtgagaac agaggcgatc gagatcagaa taggacagca 3421 gagacgccaa ccgaacagaa cagatagcag atgagaacag aacagatgag atgagaacag 3481 attagaggta aaatgaaaaa gctaagaagc gcttaagcgt gtcgtcccta gaataagaaa 3541 actaagatta cagctcgaca gatccagatc gagatcttta tctctagcag ccaatctctg 3601 atttcccctc cctcgttttt ccccctttta gtgatttagt gactgtatgt gtatgctcct 3661 aattgtatat tgatgattat ttataaagtt tgcccattgt gttacatttt aaatgatcaa 3721 aaaattgtat ttagaaattt atgactttag aaatttacaa ctttagaaat tatacattaa 3781 ttgtgtgtct gtgtctctct attcccttct ccactctctc tacccccgtc tccccatctc 3841 tctctgtctc tctccaactc tctctgtgta tgcacgagtg ttttctttga ctaagtttat 3901 tatttcgaac gctgaagcgg aatcaaacta tatatgcaat atttaagcac agtaccttgg 3961 gcgctgcaaa aacaaaacaa tacaaaaata aaaacaaata taacccgatc agctaaatca 4021 aaaatataca atatacagga aggaataact caatatcagc agcagcaaac gaaaaaccat 4081 ttagattatt gtgcaaatct aagtaatata tttaaaatat atctttattt tatcttattt 4141 taccttatgc ttttgtaagt gctttaaatt gttattcatc ttgatcttgc aaaaaaaaaa 4201 aaaacaaaac aaatctgaaa aacgaataca tactaaaaaa aaaccacaca aattatattt 4261 gtatttatac ataaaaaata aacattttat atgcgataca cgaaatgaag caccttatat 4321 tttattttat tttacatgca tgtttgttga acgctttgct tttttggtgc ccaacttgcg 4381 ttacatcaca aacgaatcct caacgaactg aaacaataac cccaaacact taggaactta 4441 gccttatatc gaaatgcctc gaccaagacg gaaaactgaa tcacagaatg gatcaagaga 4501 aaagagggag gagtcgcccc aacctttccg tctcccagtt agaacaataa gtactcatgt 4561 gtttaccccc ccaaccaacc aaccgaaccc atgaccttcc acccaccata ataccatccg 4621 atccgaacac tagagcgggt gaaagacccc gattggagca tgacgacgaa cgtgagcgta 4681 agtgcgtgat ctagtacttt atatagttag tctataatac gataatacga taattcaaat 4741 ggaatatgtc gaagcctggc ttcgaccact gggcggcgac ctagtggccc ccaaaaacga 4801 aggtgaaccc gtgtatgtaa gtcccgctgg ggatgcgatt tgttttgatc ttgaaacgcg 4861 gggcacgcaa agccccgcta ttctcgtgtt gaattttcta tagcatatag acagagcaga 4921 ggtggaaatc ggatacggat acttggacat atggacatat ggagccggag aacgtgcagc 4981 cagcggaggg agggaagaat gccaaagcac aaaaagccac acgcaacaaa acaccaatag 5041 gcctcatcga agacatcaga ccacaaaaca ttaaatataa aaacaacgat gttaagatca 5101 ataagaatga actgaaatca aaaaacgacg tgactactga cgagggatta aaggagaacc 5161 aaacaccaaa taaaa