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LOCUS XM_017140168 5465 bp mRNA linear INV 09-DEC-2024 non-receptor type corkscrew (csw), transcript variant X4, mRNA. ACCESSION XM_017140168 VERSION XM_017140168.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140168.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5465 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5465 /gene="csw" /note="protein tyrosine phosphatase non-receptor type corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056393" CDS 156..2765 /gene="csw" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X4" /protein_id="XP_016995657.2" /db_xref="GeneID:108056393" /translation="MSSRRWFHPTISGIEAEKLLQEQGFDGSFLARLSSSNPGAFTLS VRRGNEVTHIKIQNNGDFFDLYGGEKFATLPELVQYYMENGELKEKNGQAIELKQPLI CAEPTTERWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVM IRWQDKKYDVGGGESFATLSELIDHYKRNPMVETCGTVVHLRQPFNATRITAAGINAR VEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEP SVVGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLLNK TCVQCAVKSATLPYNNCATCSRKSDSLSKHKRSESSASSSPSSGSSGSSGSSGASGAG SVNGPGTPTNLTGGTAGCLAGLLKKHSSDSSSYGSGSGSASGFMSMAEREREREREMF KTYIATQGCLLSPQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRTE QFGPARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNF LQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQR TIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQSLQVGREYTNIKYTGE IGNDSQRSPLPPAISSISLVPSKTPLTPPSADSGMGMSMGMVMGVVGNKHASKQQPPL PVASCNNNNNGSGSGNSCSNGSNSSSNNGSNSMSNGGGSSNSSNGNINALLGGIGLNM RKSNFYSDSLKQQQQQQQQQQQMQQQQQREEQATAPAGAAKYKNIPKDMIGLRTPSHA PALPPPPTPPRKT" misc_feature 168..461 /gene="csw" /note="N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_N-SH2_SHP_like; cd10340" /db_xref="CDD:198203" misc_feature order(192..194,249..251,312..314,318..320) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature order(309..317,357..359,414..425,429..431) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature 483..776 /gene="csw" /note="C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_C-SH2_SHP_like; cd09931" /db_xref="CDD:198185" misc_feature order(567..569,573..575,588..593) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature order(630..632,711..713) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature 909..2123 /gene="csw" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" polyA_site 5465 /gene="csw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccacaccgc actgcccagt aaaaaatagt tttttttttg tatccaacca accaactgta 61 aaaataagtt taaacaaagc atctactcat aagtttcatt tttttccgtt aagtgtcacc 121 attatttatt ttttaagtgt gctttcaata agaaaatgtc atcgcgaaga tggttccacc 181 caacgatatc tggcatcgaa gctgagaaac tgctgcagga gcagggattc gacggctcct 241 tcctcgcccg cctctcctcc tcgaatccgg gcgccttcac gctctccgtg cgccgcggca 301 acgaggtgac ccacattaaa atccaaaaca atggcgactt ctttgatctc tatggcggtg 361 aaaagttcgc aacactgccg gaactggtac aatactatat ggagaatggc gagctgaagg 421 agaagaacgg ccaggccatc gagctgaagc agccgctgat ctgtgccgag cccaccacgg 481 aaagatggtt tcatggcaat ctttccggca aggaagcgga aaaattgatc ctggagcgag 541 gcaagaatgg ttcgtttctc gtccgtgaat ctcagagcaa gcctggcgat ttcgtcctct 601 ccgtgcggac ggacgacaaa gtaacgcatg tcatgattcg atggcaggac aagaagtacg 661 atgtcggcgg cggcgaatcg tttgccactc tgtcggaact aatagatcac tacaagcgta 721 atcccatggt ggagacgtgt ggaacggtgg tgcatctgcg gcaacccttc aacgccaccc 781 gaatcacggc ggccggaata aatgcccggg tggaacagct ggtcaaggga ggtttctggg 841 aggagttcga gtcgctgcag caggacagtc gggatacctt ctcgcgcaac gagggctaca 901 agcaggagaa ccgcctgaag aaccgctacc ggaacatatt gccctacgac cacacgcgcg 961 tcaagctgct ggacgtggag cccagcgtgg ttggggccga gtacatcaat gccaactaca 1021 tacgcctgcc caccgacggc gatctgtaca acatgagcag ctcgtcggag agcctcaata 1081 gctcggtgcc ctcgtgcccc gcctgcacgg cggcccagac gcaacggaac tgctccaact 1141 gccagctgct gaacaagacc tgcgtccagt gcgccgtgaa gagcgccacg ctgccgtaca 1201 acaactgtgc cacctgcagc cgcaagtcgg actcgctgag caagcacaag cgcagcgagt 1261 cctcggcctc ctcctcgccc tcctccggct cctcgggctc ctcgggatcg tcgggggcca 1321 gcggagcggg cagcgtcaac ggacccggca cacccaccaa tctcacgggc ggcacagccg 1381 gctgtctggc cggactgctc aagaagcact cgagcgactc gtcctcctac ggatcgggat 1441 ccggatccgc atccggcttc atgtcgatgg ccgaacggga gcgggaaagg gagcgcgaga 1501 tgttcaagac atacatcgcc acccagggat gcctgctgtc gccgcaggtg aacacggtga 1561 cggacttctg gaacatggtg tggcaggaga acacgcgggt gattgtcatg accaccaagg 1621 agtacgagcg cggcaaggag aagtgcgccc gctactggcc ggacgaggga cggacggagc 1681 agttcggtcc ggcgcggata cagtgcgtct cggagaactc gacgagtgac tacacgctgc 1741 gcgagttcct cgtctcgtgg cgggatcagc cggcgcgccg gatcttccac taccacttcc 1801 aggtgtggcc cgatcacggg gtgcccgccg atccgggctg tgtgctcaac ttcctgcagg 1861 acgtcaacac gcgacagagt cacctggcgc aggcaggcga gaagccgggt cccatctgtg 1921 tgcactgctc ggcgggcatc ggacgcaccg gcaccttcat agtgatcgac atgatcctcg 1981 accagatcgt gcgcaatggc ttggataccg agatagacat tcagcgcacc atccagatgg 2041 tccggtcgca gcgttccggc ctcgtgcaga cggaggccca gtacaagttc gtctactatg 2101 cggtgcagca ctacatccag accctgatcg cccgcaaaag ggccgaggag cagagcctgc 2161 aggttggccg ggagtacacc aatataaagt acacgggcga aattggcaac gattcacaaa 2221 gatctccatt accaccagca atttctagca taagtttagt accaagtaag acgccattga 2281 cgccgccgtc ggcggattcg ggcatgggga tgagcatggg catggtcatg ggcgtcgtgg 2341 gcaacaagca tgcctccaag cagcagccgc cgttgccggt ggctagctgc aacaacaaca 2401 acaatggcag tggcagtggc aatagctgca gcaacggcag caacagcagc agcaacaacg 2461 gcagcaacag tatgagcaac ggaggcggca gcagcaacag cagcaacggc aacatcaatg 2521 ccctgctggg cggaatcggc ttgaatatgc gcaagtcgaa cttttacagc gactcgctga 2581 agcagcagca gcaacagcag cagcaacagc agcagatgca acagcaacag caacgcgagg 2641 agcaggcgac tgctccggcg ggagcagcaa aatacaaaaa cattcccaaa gacatgatcg 2701 gcctgcgaac gccgagccat gcgcctgcgt tgccgccgcc gccgacgccg ccgcgcaaaa 2761 catgacaaat gaatttctaa gtcgcgacgc ccttgacacg cccccatgat accatgatac 2821 catgatacca tgatagcccc ccacacgcac acagaccaca agtggatttc atttaaagag 2881 tcaccctgcc gccgcaaaaa aacccaaacc caaaacccga aacccttgac tatgttttac 2941 tgttgtacca agttctactt tttttttttt ctattaattg taatctatat acttttttgt 3001 aatattgtgt gtaatgctta gttgtacgtt attgtctcgc tttatgctgt aagtgttccc 3061 tgcacacgca aagcagtaac cccaccacca gcctaaaccc aaaacccaaa accccaggca 3121 tatttatgta gtagtttttt aagagagccc ccctgcccca aaaaaccgga aattgaagat 3181 acaatctggg cggaactgca gcagatccgc caaaaaaaaa caaaaaacaa aagaaaccca 3241 tttttaagaa gaatcgcagc ggttcgccgt tcccagttcc atagcgcttg aatttggcgg 3301 aatttttgaa aattattcgc catagagttg aactgtgtcc tatgccaaaa tttccctatt 3361 tcgaatttta cggattcaaa tgagtagtat ttcttttttg agcatcaatg gtttcaagcc 3421 agaatttcaa tttttttttt cgatattttt acatttttca aaaactcttt attgaaaagt 3481 tcgatttcca aaagaaagtg aattccaact ccgtcaaatc aaatcaagtt tttagtgttg 3541 taagtgttga caaaatcgga agaggaggag ttagaggtaa cgataatgat acaaaaaaaa 3601 aagcgttgat tgtgattcga gtgacagcga gaacagaaac agaaacagat acaaaaagag 3661 ttacagaagc aggtgagaac agaggcgatc gagatcagaa taggacagca gagacgccaa 3721 ccgaacagaa cagatagcag atgagaacag aacagatgag atgagaacag attagaggta 3781 aaatgaaaaa gctaagaagc gcttaagcgt gtcgtcccta gaataagaaa actaagatta 3841 cagctcgaca gatccagatc gagatcttta tctctagcag ccaatctctg atttcccctc 3901 cctcgttttt ccccctttta gtgatttagt gactgtatgt gtatgctcct aattgtatat 3961 tgatgattat ttataaagtt tgcccattgt gttacatttt aaatgatcaa aaaattgtat 4021 ttagaaattt atgactttag aaatttacaa ctttagaaat tatacattaa ttgtgtgtct 4081 gtgtctctct attcccttct ccactctctc tacccccgtc tccccatctc tctctgtctc 4141 tctccaactc tctctgtgta tgcacgagtg ttttctttga ctaagtttat tatttcgaac 4201 gctgaagcgg aatcaaacta tatatgcaat atttaagcac agtaccttgg gcgctgcaaa 4261 aacaaaacaa tacaaaaata aaaacaaata taacccgatc agctaaatca aaaatataca 4321 atatacagga aggaataact caatatcagc agcagcaaac gaaaaaccat ttagattatt 4381 gtgcaaatct aagtaatata tttaaaatat atctttattt tatcttattt taccttatgc 4441 ttttgtaagt gctttaaatt gttattcatc ttgatcttgc aaaaaaaaaa aaaacaaaac 4501 aaatctgaaa aacgaataca tactaaaaaa aaaccacaca aattatattt gtatttatac 4561 ataaaaaata aacattttat atgcgataca cgaaatgaag caccttatat tttattttat 4621 tttacatgca tgtttgttga acgctttgct tttttggtgc ccaacttgcg ttacatcaca 4681 aacgaatcct caacgaactg aaacaataac cccaaacact taggaactta gccttatatc 4741 gaaatgcctc gaccaagacg gaaaactgaa tcacagaatg gatcaagaga aaagagggag 4801 gagtcgcccc aacctttccg tctcccagtt agaacaataa gtactcatgt gtttaccccc 4861 ccaaccaacc aaccgaaccc atgaccttcc acccaccata ataccatccg atccgaacac 4921 tagagcgggt gaaagacccc gattggagca tgacgacgaa cgtgagcgta agtgcgtgat 4981 ctagtacttt atatagttag tctataatac gataatacga taattcaaat ggaatatgtc 5041 gaagcctggc ttcgaccact gggcggcgac ctagtggccc ccaaaaacga aggtgaaccc 5101 gtgtatgtaa gtcccgctgg ggatgcgatt tgttttgatc ttgaaacgcg gggcacgcaa 5161 agccccgcta ttctcgtgtt gaattttcta tagcatatag acagagcaga ggtggaaatc 5221 ggatacggat acttggacat atggacatat ggagccggag aacgtgcagc cagcggaggg 5281 agggaagaat gccaaagcac aaaaagccac acgcaacaaa acaccaatag gcctcatcga 5341 agacatcaga ccacaaaaca ttaaatataa aaacaacgat gttaagatca ataagaatga 5401 actgaaatca aaaaacgacg tgactactga cgagggatta aaggagaacc aaacaccaaa 5461 taaaa