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LOCUS XM_017140167 5548 bp mRNA linear INV 09-DEC-2024 non-receptor type corkscrew (csw), transcript variant X3, mRNA. ACCESSION XM_017140167 VERSION XM_017140167.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140167.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5548 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5548 /gene="csw" /note="protein tyrosine phosphatase non-receptor type corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056393" CDS 156..2780 /gene="csw" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X3" /protein_id="XP_016995656.2" /db_xref="GeneID:108056393" /translation="MSSRRWFHPTISGIEAEKLLQEQGFDGSFLARLSSSNPGAFTLS VRRGNEVTHIKIQNNGDFFDLYGGEKFATLPELVQYYMENGELKEKNGQAIELKQPLI CAEPTTERWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVM IRWQDKKYDVGGGESFATLSELIDHYKRNPMVETCGTVVHLRQPFNATRITAAGINAR VEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEP SVVGAEYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLLNK TCVQCAVKSATLPYNNCATCSRKSDSLSKHKRSESSASSSPSSGSSGSSGSSGASGAG SVNGPGTPTNLTGGTAGCLAGLLKKHSSDSSSYGSGSGSASGFMSMAEREREREREMF KTYIATQGCLLSPQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRTE QFGPARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNF LQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQR TIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQSLQVGREYTNIKYTGE IGNDSQRSPLPPAISSISLVPSKTPLTPPSADSGMGMSMGMVMGVVGNKHASKQQPPL PVASCNNNNNGSGSGNSCSNGSNSSSNNGSNSMSNGGGSSNSSNGNINALLGGIGLNM RKSNFYSDSLKQQQQQQQQQQQMQQQQQREEQATAPAGAGKIQQQPAPPLRPRPGILK LLTSPVIFQQNTKTFPKT" misc_feature 168..461 /gene="csw" /note="N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_N-SH2_SHP_like; cd10340" /db_xref="CDD:198203" misc_feature order(192..194,249..251,312..314,318..320) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature order(309..317,357..359,414..425,429..431) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature 483..776 /gene="csw" /note="C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_C-SH2_SHP_like; cd09931" /db_xref="CDD:198185" misc_feature order(567..569,573..575,588..593) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature order(630..632,711..713) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature 909..2123 /gene="csw" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" polyA_site 5548 /gene="csw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccacaccgc actgcccagt aaaaaatagt tttttttttg tatccaacca accaactgta 61 aaaataagtt taaacaaagc atctactcat aagtttcatt tttttccgtt aagtgtcacc 121 attatttatt ttttaagtgt gctttcaata agaaaatgtc atcgcgaaga tggttccacc 181 caacgatatc tggcatcgaa gctgagaaac tgctgcagga gcagggattc gacggctcct 241 tcctcgcccg cctctcctcc tcgaatccgg gcgccttcac gctctccgtg cgccgcggca 301 acgaggtgac ccacattaaa atccaaaaca atggcgactt ctttgatctc tatggcggtg 361 aaaagttcgc aacactgccg gaactggtac aatactatat ggagaatggc gagctgaagg 421 agaagaacgg ccaggccatc gagctgaagc agccgctgat ctgtgccgag cccaccacgg 481 aaagatggtt tcatggcaat ctttccggca aggaagcgga aaaattgatc ctggagcgag 541 gcaagaatgg ttcgtttctc gtccgtgaat ctcagagcaa gcctggcgat ttcgtcctct 601 ccgtgcggac ggacgacaaa gtaacgcatg tcatgattcg atggcaggac aagaagtacg 661 atgtcggcgg cggcgaatcg tttgccactc tgtcggaact aatagatcac tacaagcgta 721 atcccatggt ggagacgtgt ggaacggtgg tgcatctgcg gcaacccttc aacgccaccc 781 gaatcacggc ggccggaata aatgcccggg tggaacagct ggtcaaggga ggtttctggg 841 aggagttcga gtcgctgcag caggacagtc gggatacctt ctcgcgcaac gagggctaca 901 agcaggagaa ccgcctgaag aaccgctacc ggaacatatt gccctacgac cacacgcgcg 961 tcaagctgct ggacgtggag cccagcgtgg ttggggccga gtacatcaat gccaactaca 1021 tacgcctgcc caccgacggc gatctgtaca acatgagcag ctcgtcggag agcctcaata 1081 gctcggtgcc ctcgtgcccc gcctgcacgg cggcccagac gcaacggaac tgctccaact 1141 gccagctgct gaacaagacc tgcgtccagt gcgccgtgaa gagcgccacg ctgccgtaca 1201 acaactgtgc cacctgcagc cgcaagtcgg actcgctgag caagcacaag cgcagcgagt 1261 cctcggcctc ctcctcgccc tcctccggct cctcgggctc ctcgggatcg tcgggggcca 1321 gcggagcggg cagcgtcaac ggacccggca cacccaccaa tctcacgggc ggcacagccg 1381 gctgtctggc cggactgctc aagaagcact cgagcgactc gtcctcctac ggatcgggat 1441 ccggatccgc atccggcttc atgtcgatgg ccgaacggga gcgggaaagg gagcgcgaga 1501 tgttcaagac atacatcgcc acccagggat gcctgctgtc gccgcaggtg aacacggtga 1561 cggacttctg gaacatggtg tggcaggaga acacgcgggt gattgtcatg accaccaagg 1621 agtacgagcg cggcaaggag aagtgcgccc gctactggcc ggacgaggga cggacggagc 1681 agttcggtcc ggcgcggata cagtgcgtct cggagaactc gacgagtgac tacacgctgc 1741 gcgagttcct cgtctcgtgg cgggatcagc cggcgcgccg gatcttccac taccacttcc 1801 aggtgtggcc cgatcacggg gtgcccgccg atccgggctg tgtgctcaac ttcctgcagg 1861 acgtcaacac gcgacagagt cacctggcgc aggcaggcga gaagccgggt cccatctgtg 1921 tgcactgctc ggcgggcatc ggacgcaccg gcaccttcat agtgatcgac atgatcctcg 1981 accagatcgt gcgcaatggc ttggataccg agatagacat tcagcgcacc atccagatgg 2041 tccggtcgca gcgttccggc ctcgtgcaga cggaggccca gtacaagttc gtctactatg 2101 cggtgcagca ctacatccag accctgatcg cccgcaaaag ggccgaggag cagagcctgc 2161 aggttggccg ggagtacacc aatataaagt acacgggcga aattggcaac gattcacaaa 2221 gatctccatt accaccagca atttctagca taagtttagt accaagtaag acgccattga 2281 cgccgccgtc ggcggattcg ggcatgggga tgagcatggg catggtcatg ggcgtcgtgg 2341 gcaacaagca tgcctccaag cagcagccgc cgttgccggt ggctagctgc aacaacaaca 2401 acaatggcag tggcagtggc aatagctgca gcaacggcag caacagcagc agcaacaacg 2461 gcagcaacag tatgagcaac ggaggcggca gcagcaacag cagcaacggc aacatcaatg 2521 ccctgctggg cggaatcggc ttgaatatgc gcaagtcgaa cttttacagc gactcgctga 2581 agcagcagca gcaacagcag cagcaacagc agcagatgca acagcaacag caacgcgagg 2641 agcaggcgac tgctccggcg ggagcaggta agatccagca gcagccggcg ccgccgctgc 2701 gaccgcgtcc cggcatactc aagttgctca ccagtcccgt catctttcag caaaatacaa 2761 aaacattccc aaagacatga tcggcctgcg aacgccgagc catgcgcctg cgttgccgcc 2821 gccgccgacg ccgccgcgca aaacatgaca aatgaatttc taagtcgcga cgcccttgac 2881 acgcccccat gataccatga taccatgata ccatgatagc cccccacacg cacacagacc 2941 acaagtggat ttcatttaaa gagtcaccct gccgccgcaa aaaaacccaa acccaaaacc 3001 cgaaaccctt gactatgttt tactgttgta ccaagttcta cttttttttt tttctattaa 3061 ttgtaatcta tatacttttt tgtaatattg tgtgtaatgc ttagttgtac gttattgtct 3121 cgctttatgc tgtaagtgtt ccctgcacac gcaaagcagt aaccccacca ccagcctaaa 3181 cccaaaaccc aaaaccccag gcatatttat gtagtagttt tttaagagag cccccctgcc 3241 ccaaaaaacc ggaaattgaa gatacaatct gggcggaact gcagcagatc cgccaaaaaa 3301 aaacaaaaaa caaaagaaac ccatttttaa gaagaatcgc agcggttcgc cgttcccagt 3361 tccatagcgc ttgaatttgg cggaattttt gaaaattatt cgccatagag ttgaactgtg 3421 tcctatgcca aaatttccct atttcgaatt ttacggattc aaatgagtag tatttctttt 3481 ttgagcatca atggtttcaa gccagaattt caattttttt tttcgatatt tttacatttt 3541 tcaaaaactc tttattgaaa agttcgattt ccaaaagaaa gtgaattcca actccgtcaa 3601 atcaaatcaa gtttttagtg ttgtaagtgt tgacaaaatc ggaagaggag gagttagagg 3661 taacgataat gatacaaaaa aaaaagcgtt gattgtgatt cgagtgacag cgagaacaga 3721 aacagaaaca gatacaaaaa gagttacaga agcaggtgag aacagaggcg atcgagatca 3781 gaataggaca gcagagacgc caaccgaaca gaacagatag cagatgagaa cagaacagat 3841 gagatgagaa cagattagag gtaaaatgaa aaagctaaga agcgcttaag cgtgtcgtcc 3901 ctagaataag aaaactaaga ttacagctcg acagatccag atcgagatct ttatctctag 3961 cagccaatct ctgatttccc ctccctcgtt tttccccctt ttagtgattt agtgactgta 4021 tgtgtatgct cctaattgta tattgatgat tatttataaa gtttgcccat tgtgttacat 4081 tttaaatgat caaaaaattg tatttagaaa tttatgactt tagaaattta caactttaga 4141 aattatacat taattgtgtg tctgtgtctc tctattccct tctccactct ctctaccccc 4201 gtctccccat ctctctctgt ctctctccaa ctctctctgt gtatgcacga gtgttttctt 4261 tgactaagtt tattatttcg aacgctgaag cggaatcaaa ctatatatgc aatatttaag 4321 cacagtacct tgggcgctgc aaaaacaaaa caatacaaaa ataaaaacaa atataacccg 4381 atcagctaaa tcaaaaatat acaatataca ggaaggaata actcaatatc agcagcagca 4441 aacgaaaaac catttagatt attgtgcaaa tctaagtaat atatttaaaa tatatcttta 4501 ttttatctta ttttacctta tgcttttgta agtgctttaa attgttattc atcttgatct 4561 tgcaaaaaaa aaaaaaacaa aacaaatctg aaaaacgaat acatactaaa aaaaaaccac 4621 acaaattata tttgtattta tacataaaaa ataaacattt tatatgcgat acacgaaatg 4681 aagcacctta tattttattt tattttacat gcatgtttgt tgaacgcttt gcttttttgg 4741 tgcccaactt gcgttacatc acaaacgaat cctcaacgaa ctgaaacaat aaccccaaac 4801 acttaggaac ttagccttat atcgaaatgc ctcgaccaag acggaaaact gaatcacaga 4861 atggatcaag agaaaagagg gaggagtcgc cccaaccttt ccgtctccca gttagaacaa 4921 taagtactca tgtgtttacc cccccaacca accaaccgaa cccatgacct tccacccacc 4981 ataataccat ccgatccgaa cactagagcg ggtgaaagac cccgattgga gcatgacgac 5041 gaacgtgagc gtaagtgcgt gatctagtac tttatatagt tagtctataa tacgataata 5101 cgataattca aatggaatat gtcgaagcct ggcttcgacc actgggcggc gacctagtgg 5161 cccccaaaaa cgaaggtgaa cccgtgtatg taagtcccgc tggggatgcg atttgttttg 5221 atcttgaaac gcggggcacg caaagccccg ctattctcgt gttgaatttt ctatagcata 5281 tagacagagc agaggtggaa atcggatacg gatacttgga catatggaca tatggagccg 5341 gagaacgtgc agccagcgga gggagggaag aatgccaaag cacaaaaagc cacacgcaac 5401 aaaacaccaa taggcctcat cgaagacatc agaccacaaa acattaaata taaaaacaac 5461 gatgttaaga tcaataagaa tgaactgaaa tcaaaaaacg acgtgactac tgacgaggga 5521 ttaaaggaga accaaacacc aaataaaa