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LOCUS XM_017140166 6466 bp mRNA linear INV 09-DEC-2024 non-receptor type corkscrew (csw), transcript variant X2, mRNA. ACCESSION XM_017140166 VERSION XM_017140166.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140166.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6466 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6466 /gene="csw" /note="protein tyrosine phosphatase non-receptor type corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056393" CDS 836..3766 /gene="csw" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X2" /protein_id="XP_016995655.2" /db_xref="GeneID:108056393" /translation="MLFNKCLEKLSSSLGNVVNHKLQEKQVYNNNNNNINNNNNNSSS INNNAYNKQRNFEYERAIQAHYGGKGRRSEERERSGKLRASKGQKSKVTPPEEPEVET ACKKCMTHDELAQIIRGVNQSQGNQINQNNRLQRRRRPLSAQPSAAASASTSTESLHR LTPSPQASSSAHASYPATPTSWSATPPQFPAAFGGASCSGSTLSLLATMRVQLHGYTW FHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYD VGGGESFATLSELIDHYKRNPMVETCGTVVHLRQPFNATRITAAGINARVEQLVKGGF WEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEPSVVGAEYIN ANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLLNKTCVQCAVKS ATLPYNNCATCSRKSDSLSKHKRSESSASSSPSSGSSGSSGSSGASGAGSVNGPGTPT NLTGGTAGCLAGLLKKHSSDSSSYGSGSGSASGFMSMAEREREREREMFKTYIATQGC LLSPQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRTEQFGPARIQC VSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQS HLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQR SGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSP LPPAISSISLVPSKTPLTPPSADSGMGMSMGMVMGVVGNKHASKQQPPLPVASCNNNN NGSGSGNSCSNGSNSSSNNGSNSMSNGGGSSNSSNGNINALLGGIGLNMRKSNFYSDS LKQQQQQQQQQQQMQQQQQREEQATAPAGAAKYKNIPKDMIGLRTPSHAPALPPPPTP PRKT" misc_feature 1487..1777 /gene="csw" /note="C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_C-SH2_SHP_like; cd09931" /db_xref="CDD:198185" misc_feature order(1568..1570,1574..1576,1589..1594) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature order(1631..1633,1712..1714) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature 1910..3124 /gene="csw" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" polyA_site 6466 /gene="csw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcccacatcc cacagctccc gacggagaga tattgtataa acgaacgccg ctgagagagc 61 ggaagaatcg tatattgaat cgtatcggga agagagagcg gagaagcagc ccgcgctgag 121 acaacgtcaa gaatccgatt ccgaatctga atccgaggca aaaagcttca gacccggcag 181 caggcgcttc attctcgagt tgcggtccaa cgggttagca gctcagctca gcttagcgcg 241 caagcagtcg ccgtgcgtcg aatcttcggc aagcagttcg cttcgagtct tttttttcga 301 gtggtcttca gttctcagtt ttgaaatctt ctgtacgaat tatgccttcg gccacatttg 361 tcctggagca cttgatggcg gcacaaacgc gtcttaacga gcaagccgca tcgccagcag 421 aggtcaaaat cagcaccacc agcaccacca caaccaccgt ggttaaagcc accaaagcca 481 agtcgtacga gaagaaactg ctgctggccc tcaagaaaat tgtgcaataa taaacaacac 541 tctattttac aaactatata gacatttcac cttaatcgag ctgactaaga tcaataaaaa 601 aaaaaaaaca gagaaacaaa acagaaaaac aaaacaaaca gcggcaacaa aaacaagaat 661 tctagtttct gtgtgtgtgc tttttaagtg tgttttgcga gtgggcaagt tgttacataa 721 aaacgtaaaa aagtaatata aaaagccccc gaaccaagac gcatttttcc gcagtggaat 781 actaccgctt ctgtattttt gttttggtgc gaaaaaaaaa acgagagtga agaaaatgct 841 gttcaacaaa tgcctggaaa agttgtccag ctcgctgggc aatgtggtca atcacaagct 901 gcaagagaaa caagtctaca acaataataa taataatata aataataata ataacaatag 961 tagtagtata aacaacaatg cgtacaataa gcagcggaac tttgagtacg agagggccat 1021 tcaggcgcac tacggcggca agggaaggcg atcggaggag cgggagagga gcggcaagtt 1081 gagggccagc aagggtcaga agtcaaaggt cacgccaccg gaagaaccgg aagtggagac 1141 ggcctgcaag aagtgcatga cccacgacga gctggcccag atcatcaggg gcgtcaatca 1201 gagccaaggc aatcagatta atcaaaacaa tcgcctccag cgaagacgtc gtcccctgtc 1261 cgcccagcca tccgccgccg cctccgcctc cacgtccacg gagtccctgc accggctcac 1321 ccccagcccc caggcctcct cctccgcaca tgcctcctac ccggccacgc ccacctcctg 1381 gtcggccacc ccgccccaat tcccagccgc cttcggggga gccagctgct ccggcagcac 1441 cctctctctg ctggccacca tgcgcgtcca gctccatggt tacacatggt ttcatggcaa 1501 tctttccggc aaggaagcgg aaaaattgat cctggagcga ggcaagaatg gttcgtttct 1561 cgtccgtgaa tctcagagca agcctggcga tttcgtcctc tccgtgcgga cggacgacaa 1621 agtaacgcat gtcatgattc gatggcagga caagaagtac gatgtcggcg gcggcgaatc 1681 gtttgccact ctgtcggaac taatagatca ctacaagcgt aatcccatgg tggagacgtg 1741 tggaacggtg gtgcatctgc ggcaaccctt caacgccacc cgaatcacgg cggccggaat 1801 aaatgcccgg gtggaacagc tggtcaaggg aggtttctgg gaggagttcg agtcgctgca 1861 gcaggacagt cgggatacct tctcgcgcaa cgagggctac aagcaggaga accgcctgaa 1921 gaaccgctac cggaacatat tgccctacga ccacacgcgc gtcaagctgc tggacgtgga 1981 gcccagcgtg gttggggccg agtacatcaa tgccaactac atacgcctgc ccaccgacgg 2041 cgatctgtac aacatgagca gctcgtcgga gagcctcaat agctcggtgc cctcgtgccc 2101 cgcctgcacg gcggcccaga cgcaacggaa ctgctccaac tgccagctgc tgaacaagac 2161 ctgcgtccag tgcgccgtga agagcgccac gctgccgtac aacaactgtg ccacctgcag 2221 ccgcaagtcg gactcgctga gcaagcacaa gcgcagcgag tcctcggcct cctcctcgcc 2281 ctcctccggc tcctcgggct cctcgggatc gtcgggggcc agcggagcgg gcagcgtcaa 2341 cggacccggc acacccacca atctcacggg cggcacagcc ggctgtctgg ccggactgct 2401 caagaagcac tcgagcgact cgtcctccta cggatcggga tccggatccg catccggctt 2461 catgtcgatg gccgaacggg agcgggaaag ggagcgcgag atgttcaaga catacatcgc 2521 cacccaggga tgcctgctgt cgccgcaggt gaacacggtg acggacttct ggaacatggt 2581 gtggcaggag aacacgcggg tgattgtcat gaccaccaag gagtacgagc gcggcaagga 2641 gaagtgcgcc cgctactggc cggacgaggg acggacggag cagttcggtc cggcgcggat 2701 acagtgcgtc tcggagaact cgacgagtga ctacacgctg cgcgagttcc tcgtctcgtg 2761 gcgggatcag ccggcgcgcc ggatcttcca ctaccacttc caggtgtggc ccgatcacgg 2821 ggtgcccgcc gatccgggct gtgtgctcaa cttcctgcag gacgtcaaca cgcgacagag 2881 tcacctggcg caggcaggcg agaagccggg tcccatctgt gtgcactgct cggcgggcat 2941 cggacgcacc ggcaccttca tagtgatcga catgatcctc gaccagatcg tgcgcaatgg 3001 cttggatacc gagatagaca ttcagcgcac catccagatg gtccggtcgc agcgttccgg 3061 cctcgtgcag acggaggccc agtacaagtt cgtctactat gcggtgcagc actacatcca 3121 gaccctgatc gcccgcaaaa gggccgagga gcagagcctg caggttggcc gggagtacac 3181 caatataaag tacacgggcg aaattggcaa cgattcacaa agatctccat taccaccagc 3241 aatttctagc ataagtttag taccaagtaa gacgccattg acgccgccgt cggcggattc 3301 gggcatgggg atgagcatgg gcatggtcat gggcgtcgtg ggcaacaagc atgcctccaa 3361 gcagcagccg ccgttgccgg tggctagctg caacaacaac aacaatggca gtggcagtgg 3421 caatagctgc agcaacggca gcaacagcag cagcaacaac ggcagcaaca gtatgagcaa 3481 cggaggcggc agcagcaaca gcagcaacgg caacatcaat gccctgctgg gcggaatcgg 3541 cttgaatatg cgcaagtcga acttttacag cgactcgctg aagcagcagc agcaacagca 3601 gcagcaacag cagcagatgc aacagcaaca gcaacgcgag gagcaggcga ctgctccggc 3661 gggagcagca aaatacaaaa acattcccaa agacatgatc ggcctgcgaa cgccgagcca 3721 tgcgcctgcg ttgccgccgc cgccgacgcc gccgcgcaaa acatgacaaa tgaatttcta 3781 agtcgcgacg cccttgacac gcccccatga taccatgata ccatgatacc atgatagccc 3841 cccacacgca cacagaccac aagtggattt catttaaaga gtcaccctgc cgccgcaaaa 3901 aaacccaaac ccaaaacccg aaacccttga ctatgtttta ctgttgtacc aagttctact 3961 tttttttttt tctattaatt gtaatctata tacttttttg taatattgtg tgtaatgctt 4021 agttgtacgt tattgtctcg ctttatgctg taagtgttcc ctgcacacgc aaagcagtaa 4081 ccccaccacc agcctaaacc caaaacccaa aaccccaggc atatttatgt agtagttttt 4141 taagagagcc cccctgcccc aaaaaaccgg aaattgaaga tacaatctgg gcggaactgc 4201 agcagatccg ccaaaaaaaa acaaaaaaca aaagaaaccc atttttaaga agaatcgcag 4261 cggttcgccg ttcccagttc catagcgctt gaatttggcg gaatttttga aaattattcg 4321 ccatagagtt gaactgtgtc ctatgccaaa atttccctat ttcgaatttt acggattcaa 4381 atgagtagta tttctttttt gagcatcaat ggtttcaagc cagaatttca attttttttt 4441 tcgatatttt tacatttttc aaaaactctt tattgaaaag ttcgatttcc aaaagaaagt 4501 gaattccaac tccgtcaaat caaatcaagt ttttagtgtt gtaagtgttg acaaaatcgg 4561 aagaggagga gttagaggta acgataatga tacaaaaaaa aaagcgttga ttgtgattcg 4621 agtgacagcg agaacagaaa cagaaacaga tacaaaaaga gttacagaag caggtgagaa 4681 cagaggcgat cgagatcaga ataggacagc agagacgcca accgaacaga acagatagca 4741 gatgagaaca gaacagatga gatgagaaca gattagaggt aaaatgaaaa agctaagaag 4801 cgcttaagcg tgtcgtccct agaataagaa aactaagatt acagctcgac agatccagat 4861 cgagatcttt atctctagca gccaatctct gatttcccct ccctcgtttt tccccctttt 4921 agtgatttag tgactgtatg tgtatgctcc taattgtata ttgatgatta tttataaagt 4981 ttgcccattg tgttacattt taaatgatca aaaaattgta tttagaaatt tatgacttta 5041 gaaatttaca actttagaaa ttatacatta attgtgtgtc tgtgtctctc tattcccttc 5101 tccactctct ctacccccgt ctccccatct ctctctgtct ctctccaact ctctctgtgt 5161 atgcacgagt gttttctttg actaagttta ttatttcgaa cgctgaagcg gaatcaaact 5221 atatatgcaa tatttaagca cagtaccttg ggcgctgcaa aaacaaaaca atacaaaaat 5281 aaaaacaaat ataacccgat cagctaaatc aaaaatatac aatatacagg aaggaataac 5341 tcaatatcag cagcagcaaa cgaaaaacca tttagattat tgtgcaaatc taagtaatat 5401 atttaaaata tatctttatt ttatcttatt ttaccttatg cttttgtaag tgctttaaat 5461 tgttattcat cttgatcttg caaaaaaaaa aaaaacaaaa caaatctgaa aaacgaatac 5521 atactaaaaa aaaaccacac aaattatatt tgtatttata cataaaaaat aaacatttta 5581 tatgcgatac acgaaatgaa gcaccttata ttttatttta ttttacatgc atgtttgttg 5641 aacgctttgc ttttttggtg cccaacttgc gttacatcac aaacgaatcc tcaacgaact 5701 gaaacaataa ccccaaacac ttaggaactt agccttatat cgaaatgcct cgaccaagac 5761 ggaaaactga atcacagaat ggatcaagag aaaagaggga ggagtcgccc caacctttcc 5821 gtctcccagt tagaacaata agtactcatg tgtttacccc cccaaccaac caaccgaacc 5881 catgaccttc cacccaccat aataccatcc gatccgaaca ctagagcggg tgaaagaccc 5941 cgattggagc atgacgacga acgtgagcgt aagtgcgtga tctagtactt tatatagtta 6001 gtctataata cgataatacg ataattcaaa tggaatatgt cgaagcctgg cttcgaccac 6061 tgggcggcga cctagtggcc cccaaaaacg aaggtgaacc cgtgtatgta agtcccgctg 6121 gggatgcgat ttgttttgat cttgaaacgc ggggcacgca aagccccgct attctcgtgt 6181 tgaattttct atagcatata gacagagcag aggtggaaat cggatacgga tacttggaca 6241 tatggacata tggagccgga gaacgtgcag ccagcggagg gagggaagaa tgccaaagca 6301 caaaaagcca cacgcaacaa aacaccaata ggcctcatcg aagacatcag accacaaaac 6361 attaaatata aaaacaacga tgttaagatc aataagaatg aactgaaatc aaaaaacgac 6421 gtgactactg acgagggatt aaaggagaac caaacaccaa ataaaa