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LOCUS XM_017140165 6550 bp mRNA linear INV 09-DEC-2024 non-receptor type corkscrew (csw), transcript variant X1, mRNA. ACCESSION XM_017140165 VERSION XM_017140165.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140165.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6550 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6550 /gene="csw" /note="protein tyrosine phosphatase non-receptor type corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056393" CDS 837..3782 /gene="csw" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X1" /protein_id="XP_016995654.2" /db_xref="GeneID:108056393" /translation="MLFNKCLEKLSSSLGNVVNHKLQEKQVYNNNNNNINNNNNNSSS INNNAYNKQRNFEYERAIQAHYGGKGRRSEERERSGKLRASKGQKSKVTPPEEPEVET ACKKCMTHDELAQIIRGVNQSQGNQINQNNRLQRRRRPLSAQPSAAASASTSTESLHR LTPSPQASSSAHASYPATPTSWSATPPQFPAAFGGASCSGSTLSLLATMRVQLHGYTW FHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYD VGGGESFATLSELIDHYKRNPMVETCGTVVHLRQPFNATRITAAGINARVEQLVKGGF WEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEPSVVGAEYIN ANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLLNKTCVQCAVKS ATLPYNNCATCSRKSDSLSKHKRSESSASSSPSSGSSGSSGSSGASGAGSVNGPGTPT NLTGGTAGCLAGLLKKHSSDSSSYGSGSGSASGFMSMAEREREREREMFKTYIATQGC LLSPQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRTEQFGPARIQC VSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQS HLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQR SGLVQTEAQYKFVYYAVQHYIQTLIARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSP LPPAISSISLVPSKTPLTPPSADSGMGMSMGMVMGVVGNKHASKQQPPLPVASCNNNN NGSGSGNSCSNGSNSSSNNGSNSMSNGGGSSNSSNGNINALLGGIGLNMRKSNFYSDS LKQQQQQQQQQQQMQQQQQREEQATAPAGAGKIQQQPAPPLRPRPGILKLLTSPVIFQ QNTKTFPKT" misc_feature 1488..1778 /gene="csw" /note="C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_C-SH2_SHP_like; cd09931" /db_xref="CDD:198185" misc_feature order(1569..1571,1575..1577,1590..1595) /gene="csw" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature order(1632..1634,1713..1715) /gene="csw" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature 1911..3125 /gene="csw" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" polyA_site 6550 /gene="csw" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agcccacatc ccacagctcc cgacggagag atattgtata aacgaacgcc gctgagagag 61 cggaagaatc gtatattgaa tcgtatcggg aagagagagc ggagaagcag cccgcgctga 121 gacaacgtca agaatccgat tccgaatctg aatccgaggc aaaaagcttc agacccggca 181 gcaggcgctt cattctcgag ttgcggtcca acgggttagc agctcagctc agcttagcgc 241 gcaagcagtc gccgtgcgtc gaatcttcgg caagcagttc gcttcgagtc ttttttttcg 301 agtggtcttc agttctcagt tttgaaatct tctgtacgaa ttatgccttc ggccacattt 361 gtcctggagc acttgatggc ggcacaaacg cgtcttaacg agcaagccgc atcgccagca 421 gaggtcaaaa tcagcaccac cagcaccacc acaaccaccg tggttaaagc caccaaagcc 481 aagtcgtacg agaagaaact gctgctggcc ctcaagaaaa ttgtgcaata ataaacaaca 541 ctctatttta caaactatat agacatttca ccttaatcga gctgactaag atcaataaaa 601 aaaaaaaaac agagaaacaa aacagaaaaa caaaacaaac agcggcaaca aaaacaagaa 661 ttctagtttc tgtgtgtgtg ctttttaagt gtgttttgcg agtgggcaag ttgttacata 721 aaaacgtaaa aaagtaatat aaaaagcccc cgaaccaaga cgcatttttc cgcagtggaa 781 tactaccgct tctgtatttt tgttttggtg cgaaaaaaaa aacgagagtg aagaaaatgc 841 tgttcaacaa atgcctggaa aagttgtcca gctcgctggg caatgtggtc aatcacaagc 901 tgcaagagaa acaagtctac aacaataata ataataatat aaataataat aataacaata 961 gtagtagtat aaacaacaat gcgtacaata agcagcggaa ctttgagtac gagagggcca 1021 ttcaggcgca ctacggcggc aagggaaggc gatcggagga gcgggagagg agcggcaagt 1081 tgagggccag caagggtcag aagtcaaagg tcacgccacc ggaagaaccg gaagtggaga 1141 cggcctgcaa gaagtgcatg acccacgacg agctggccca gatcatcagg ggcgtcaatc 1201 agagccaagg caatcagatt aatcaaaaca atcgcctcca gcgaagacgt cgtcccctgt 1261 ccgcccagcc atccgccgcc gcctccgcct ccacgtccac ggagtccctg caccggctca 1321 cccccagccc ccaggcctcc tcctccgcac atgcctccta cccggccacg cccacctcct 1381 ggtcggccac cccgccccaa ttcccagccg ccttcggggg agccagctgc tccggcagca 1441 ccctctctct gctggccacc atgcgcgtcc agctccatgg ttacacatgg tttcatggca 1501 atctttccgg caaggaagcg gaaaaattga tcctggagcg aggcaagaat ggttcgtttc 1561 tcgtccgtga atctcagagc aagcctggcg atttcgtcct ctccgtgcgg acggacgaca 1621 aagtaacgca tgtcatgatt cgatggcagg acaagaagta cgatgtcggc ggcggcgaat 1681 cgtttgccac tctgtcggaa ctaatagatc actacaagcg taatcccatg gtggagacgt 1741 gtggaacggt ggtgcatctg cggcaaccct tcaacgccac ccgaatcacg gcggccggaa 1801 taaatgcccg ggtggaacag ctggtcaagg gaggtttctg ggaggagttc gagtcgctgc 1861 agcaggacag tcgggatacc ttctcgcgca acgagggcta caagcaggag aaccgcctga 1921 agaaccgcta ccggaacata ttgccctacg accacacgcg cgtcaagctg ctggacgtgg 1981 agcccagcgt ggttggggcc gagtacatca atgccaacta catacgcctg cccaccgacg 2041 gcgatctgta caacatgagc agctcgtcgg agagcctcaa tagctcggtg ccctcgtgcc 2101 ccgcctgcac ggcggcccag acgcaacgga actgctccaa ctgccagctg ctgaacaaga 2161 cctgcgtcca gtgcgccgtg aagagcgcca cgctgccgta caacaactgt gccacctgca 2221 gccgcaagtc ggactcgctg agcaagcaca agcgcagcga gtcctcggcc tcctcctcgc 2281 cctcctccgg ctcctcgggc tcctcgggat cgtcgggggc cagcggagcg ggcagcgtca 2341 acggacccgg cacacccacc aatctcacgg gcggcacagc cggctgtctg gccggactgc 2401 tcaagaagca ctcgagcgac tcgtcctcct acggatcggg atccggatcc gcatccggct 2461 tcatgtcgat ggccgaacgg gagcgggaaa gggagcgcga gatgttcaag acatacatcg 2521 ccacccaggg atgcctgctg tcgccgcagg tgaacacggt gacggacttc tggaacatgg 2581 tgtggcagga gaacacgcgg gtgattgtca tgaccaccaa ggagtacgag cgcggcaagg 2641 agaagtgcgc ccgctactgg ccggacgagg gacggacgga gcagttcggt ccggcgcgga 2701 tacagtgcgt ctcggagaac tcgacgagtg actacacgct gcgcgagttc ctcgtctcgt 2761 ggcgggatca gccggcgcgc cggatcttcc actaccactt ccaggtgtgg cccgatcacg 2821 gggtgcccgc cgatccgggc tgtgtgctca acttcctgca ggacgtcaac acgcgacaga 2881 gtcacctggc gcaggcaggc gagaagccgg gtcccatctg tgtgcactgc tcggcgggca 2941 tcggacgcac cggcaccttc atagtgatcg acatgatcct cgaccagatc gtgcgcaatg 3001 gcttggatac cgagatagac attcagcgca ccatccagat ggtccggtcg cagcgttccg 3061 gcctcgtgca gacggaggcc cagtacaagt tcgtctacta tgcggtgcag cactacatcc 3121 agaccctgat cgcccgcaaa agggccgagg agcagagcct gcaggttggc cgggagtaca 3181 ccaatataaa gtacacgggc gaaattggca acgattcaca aagatctcca ttaccaccag 3241 caatttctag cataagttta gtaccaagta agacgccatt gacgccgccg tcggcggatt 3301 cgggcatggg gatgagcatg ggcatggtca tgggcgtcgt gggcaacaag catgcctcca 3361 agcagcagcc gccgttgccg gtggctagct gcaacaacaa caacaatggc agtggcagtg 3421 gcaatagctg cagcaacggc agcaacagca gcagcaacaa cggcagcaac agtatgagca 3481 acggaggcgg cagcagcaac agcagcaacg gcaacatcaa tgccctgctg ggcggaatcg 3541 gcttgaatat gcgcaagtcg aacttttaca gcgactcgct gaagcagcag cagcaacagc 3601 agcagcaaca gcagcagatg caacagcaac agcaacgcga ggagcaggcg actgctccgg 3661 cgggagcagg taagatccag cagcagccgg cgccgccgct gcgaccgcgt cccggcatac 3721 tcaagttgct caccagtccc gtcatctttc agcaaaatac aaaaacattc ccaaagacat 3781 gatcggcctg cgaacgccga gccatgcgcc tgcgttgccg ccgccgccga cgccgccgcg 3841 caaaacatga caaatgaatt tctaagtcgc gacgcccttg acacgccccc atgataccat 3901 gataccatga taccatgata gccccccaca cgcacacaga ccacaagtgg atttcattta 3961 aagagtcacc ctgccgccgc aaaaaaaccc aaacccaaaa cccgaaaccc ttgactatgt 4021 tttactgttg taccaagttc tacttttttt tttttctatt aattgtaatc tatatacttt 4081 tttgtaatat tgtgtgtaat gcttagttgt acgttattgt ctcgctttat gctgtaagtg 4141 ttccctgcac acgcaaagca gtaaccccac caccagccta aacccaaaac ccaaaacccc 4201 aggcatattt atgtagtagt tttttaagag agcccccctg ccccaaaaaa ccggaaattg 4261 aagatacaat ctgggcggaa ctgcagcaga tccgccaaaa aaaaacaaaa aacaaaagaa 4321 acccattttt aagaagaatc gcagcggttc gccgttccca gttccatagc gcttgaattt 4381 ggcggaattt ttgaaaatta ttcgccatag agttgaactg tgtcctatgc caaaatttcc 4441 ctatttcgaa ttttacggat tcaaatgagt agtatttctt ttttgagcat caatggtttc 4501 aagccagaat ttcaattttt tttttcgata tttttacatt tttcaaaaac tctttattga 4561 aaagttcgat ttccaaaaga aagtgaattc caactccgtc aaatcaaatc aagtttttag 4621 tgttgtaagt gttgacaaaa tcggaagagg aggagttaga ggtaacgata atgatacaaa 4681 aaaaaaagcg ttgattgtga ttcgagtgac agcgagaaca gaaacagaaa cagatacaaa 4741 aagagttaca gaagcaggtg agaacagagg cgatcgagat cagaatagga cagcagagac 4801 gccaaccgaa cagaacagat agcagatgag aacagaacag atgagatgag aacagattag 4861 aggtaaaatg aaaaagctaa gaagcgctta agcgtgtcgt ccctagaata agaaaactaa 4921 gattacagct cgacagatcc agatcgagat ctttatctct agcagccaat ctctgatttc 4981 ccctccctcg tttttccccc ttttagtgat ttagtgactg tatgtgtatg ctcctaattg 5041 tatattgatg attatttata aagtttgccc attgtgttac attttaaatg atcaaaaaat 5101 tgtatttaga aatttatgac tttagaaatt tacaacttta gaaattatac attaattgtg 5161 tgtctgtgtc tctctattcc cttctccact ctctctaccc ccgtctcccc atctctctct 5221 gtctctctcc aactctctct gtgtatgcac gagtgttttc tttgactaag tttattattt 5281 cgaacgctga agcggaatca aactatatat gcaatattta agcacagtac cttgggcgct 5341 gcaaaaacaa aacaatacaa aaataaaaac aaatataacc cgatcagcta aatcaaaaat 5401 atacaatata caggaaggaa taactcaata tcagcagcag caaacgaaaa accatttaga 5461 ttattgtgca aatctaagta atatatttaa aatatatctt tattttatct tattttacct 5521 tatgcttttg taagtgcttt aaattgttat tcatcttgat cttgcaaaaa aaaaaaaaac 5581 aaaacaaatc tgaaaaacga atacatacta aaaaaaaacc acacaaatta tatttgtatt 5641 tatacataaa aaataaacat tttatatgcg atacacgaaa tgaagcacct tatattttat 5701 tttattttac atgcatgttt gttgaacgct ttgctttttt ggtgcccaac ttgcgttaca 5761 tcacaaacga atcctcaacg aactgaaaca ataaccccaa acacttagga acttagcctt 5821 atatcgaaat gcctcgacca agacggaaaa ctgaatcaca gaatggatca agagaaaaga 5881 gggaggagtc gccccaacct ttccgtctcc cagttagaac aataagtact catgtgttta 5941 cccccccaac caaccaaccg aacccatgac cttccaccca ccataatacc atccgatccg 6001 aacactagag cgggtgaaag accccgattg gagcatgacg acgaacgtga gcgtaagtgc 6061 gtgatctagt actttatata gttagtctat aatacgataa tacgataatt caaatggaat 6121 atgtcgaagc ctggcttcga ccactgggcg gcgacctagt ggcccccaaa aacgaaggtg 6181 aacccgtgta tgtaagtccc gctggggatg cgatttgttt tgatcttgaa acgcggggca 6241 cgcaaagccc cgctattctc gtgttgaatt ttctatagca tatagacaga gcagaggtgg 6301 aaatcggata cggatacttg gacatatgga catatggagc cggagaacgt gcagccagcg 6361 gagggaggga agaatgccaa agcacaaaaa gccacacgca acaaaacacc aataggcctc 6421 atcgaagaca tcagaccaca aaacattaaa tataaaaaca acgatgttaa gatcaataag 6481 aatgaactga aatcaaaaaa cgacgtgact actgacgagg gattaaagga gaaccaaaca 6541 ccaaataaaa