Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017140164 5843 bp mRNA linear INV 09-DEC-2024 protein (LOC108056392), transcript variant X3, mRNA. ACCESSION XM_017140164 VERSION XM_017140164.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140164.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5843 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5843 /gene="LOC108056392" /note="polyhomeotic-proximal chromatin protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056392" CDS 64..4776 /gene="LOC108056392" /codon_start=1 /product="polyhomeotic-proximal chromatin protein isoform X2" /protein_id="XP_016995653.2" /db_xref="GeneID:108056392" /translation="MPHAFGAAPSVAVTESEATPPSSPAPAPLTTSTSTSAPVKGALN AREDPQRPLRCLETLAQKAGINFDEDLAKSPSSQTSQSSPSTRTTRGAAGTPTIRRRH PLLPLTSSSRSSRSSSPSTPNSKTRGHKLEKSQSPAQQVAAATTVPLQISPEQLQQFY ASNPYAIQVKQEFPTHTTGGGGTELKHAANILDVQQQMQLQQQLSDASGGGGAGGGAA GNAGAAGGAPSPANSQQSTAISTMSPMQLAAATGGVGGDWSQGRTVQLMQPSTSFLYP QMIVSGNLLHPGGLGQQPIQVITAGKPFQGNGPQMLTTTTQNAKQMIGGQAGFAGGNY TTCIPSNHNQSPQTLLISPVNVISHSPQQQQNLLQSMAAAAQQQQLTQQQQQQQLTQQ QQQQQLTQQQQQQQQQLTAALAKVGVDAQGKLAQKVVQKVTTTSSTVQAATGPGSAGT TQAQQVQQVQQQQQQTTQTTQQCVQVSQSTLPVGVGAQSVQSVQTAQLLNAGQAQQMQ IPWFWQNAAGLQPFGSNQIILRNQPDGTQGMFIQQQPTTQTLQTQQNQIIQCNVTQTP TKARTQLDALAPKQQQQQGGTANQTQQQQLAVATAQLQQQQQQLTAAALQRPGAPIMP HNGTQVRPASSVSTQTAQNQSLLKAKMRNKQQPVRPALPTLKTENGQVGGQNKVVGHL TTVQQQQQATNLQQVVNAAGNKMVVMSTTGTPITLQNGQTLHSATTGVDKQQQQLQLI QKQQFLQQQMFQQQIAAIQMQQQAAVQAQQQQQQQQVSQQQQVNAQQQQAVAQQQQAV AQAQQQQREQQQQVAQAQAQQQQALANATQQILQVAPNQFITSHQQQQQQQLHNQLIQ QQLQQQAQAQAQVQAQVQAQAQQQQQQREQQQQQQQNIIQQIVVQQSGGASAQQQQQQ AQQQSGQLQLSSVPFSVSSTTTPAGIATSSALQAALSASGAIFQTAKPVTCSSSSLPT SSVVTITNQSSTPLVTSSTVASMQAQAQAAQIHQQQQQLISATIAAASQQQQQQGPPS LTPTTPSPTTNPILAMTSMMNATVGHLSTAPPVTVSVTSTAVTPSPGQLVTLSSASSG GGSFPSTPSKETPSRVPTATLVPIDSPMTPVSGQDSCSTPKSSTPANVSASVEASSST SEALPNGEATDRASTPSKAATTPTSKQSNAVQPTSSCSTPTSASGKEEPKVATSVSST SATSTPTTTTISNGIGIARSTAGTTGSTTASTTTTTCSTSTTSCTSITTTTTTSNSNG AKDLPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKAAMQEDIK PSGIASAPASDMVACEQCGKLEHKTKLKRKRYCSPGCARQAKNGIGGVGTGETNGLGS GGIVGVDAMALVDKLDEAMAVEKMQTEALQAMSEIQPIQAAPTEVPTPNTMPVLTAIP ASSPLSMPLALPLPVAILPSVPLPPVVPAGVVTPVAAALSSSNVNGSDRPPISSWSVE EVSNFIRELPGCQDYVDDFVQQEIDGQALLLLKENHLVHAMGMKLGPALKIVAKVESM KEVPPPGDAKDAAAGGAQ" misc_feature 4519..4725 /gene="LOC108056392" /note="SAM domain of Ph (polyhomeotic) proteins of Polycomb group; Region: SAM_Ph1,2,3; cd09577" /db_xref="CDD:188976" misc_feature order(4573..4578,4678..4683,4690..4695,4702..4704) /gene="LOC108056392" /note="oligomer interface EH [polypeptide binding]; other site" /db_xref="CDD:188976" misc_feature order(4606..4620,4624..4629,4636..4641,4651..4653, 4666..4668) /gene="LOC108056392" /note="oligomer interface ML [polypeptide binding]; other site" /db_xref="CDD:188976" polyA_site 5843 /gene="LOC108056392" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agagagagtg actcgtagtc acagtttgtt gatgtgcgat aaaaaagaat atgaatatga 61 agcatgcccc acgcattcgg agccgcccca agtgttgcgg tcaccgaaag tgaagcaaca 121 cctccatcgt cacctgcacc tgcaccgctc accacatcca catccacatc tgcacccgtg 181 aaaggcgcac tcaacgctcg cgaggatccc cagcgaccac tcaggtgcct ggaaacactt 241 gcccagaagg cgggcatcaa cttcgacgag gacttggcca agagtccatc atcccagaca 301 tcccaatcat cgcccagcac caggacgacc cgcggagcag ccggaacgcc caccatcagg 361 cggcgccacc cactattgcc actcaccagc agcagcagga gcagccggag cagctcacca 421 agtacgccca actcgaagac gcgcggccat aagctggaga agtcacagag tcccgcccaa 481 caggtggcgg ccgccaccac cgtgccgctc cagatatcgc ccgagcagct gcagcagttc 541 tacgcgagca atccctatgc catccaggtg aagcaggagt ttcccacgca cacgactggc 601 ggagggggaa ccgagctgaa gcatgcggcc aacatcctgg atgtccagca gcagatgcag 661 ctccagcagc agctctcgga tgccagtggg ggcggaggag cgggcggagg agccgcgggg 721 aatgcaggag cagcgggagg agcacctagt ccggccaatt cccaacagtc caccgccatt 781 agcaccatgt ccccaatgca gttggcagct gccaccggtg gcgtgggcgg ggattggtcg 841 cagggcagga cagtgcagct gatgcagccc tccaccagct tcctgtaccc gcagatgatt 901 gtgtccggca atctgctgca ccccggcggc ctcggccagc agcccattca ggtgatcacc 961 gccggcaagc cgttccaggg caacggcccc cagatgctca ccaccacgac gcagaacgcc 1021 aagcagatga tcggtggcca ggcgggattc gccggcggca actacaccac ctgcattccc 1081 tcgaaccaca accagtcgcc ccagacgctg ctcatctcgc cggtgaacgt catctcccac 1141 tcgccgcagc agcagcagaa cctgctgcag tccatggccg ccgcagcgca gcagcagcaa 1201 ctcacgcagc agcaacagca gcaacagctc acccagcagc aacagcagca gcagctcacc 1261 cagcagcaac aacagcagca gcaacagctg acggctgccc tggccaaggt gggggtggat 1321 gcgcagggca agctggccca gaaggtggtc cagaaggtga ccaccaccag cagcacggtt 1381 caggcggcga cgggaccagg atccgctggg acgacccagg cccagcaagt gcagcaggtc 1441 caacagcagc agcagcagac cacccaaacc acccagcagt gcgtccaggt ctcgcagtcg 1501 acgttgccag tcggagtggg cgcccagtct gttcagtctg tccagactgc ccagctcctc 1561 aacgccggcc aggcgcagca gatgcagatc ccctggttct ggcagaatgc ggcaggactg 1621 cagcccttcg gctccaacca gatcatcctg cgaaaccagc cggacggaac ccagggcatg 1681 tttatccagc agcagccgac gacccagacc ctgcagacgc agcagaacca gatcatccag 1741 tgcaatgtga cccagacccc caccaaggca cgcacccagc tcgacgcact ggctcctaag 1801 cagcagcagc agcagggagg caccgccaac cagacacagc agcaacagct ggctgtggcc 1861 actgcccagc tgcagcagca gcagcaacaa ctcacggcag cagctctgca gcgaccgggg 1921 gccccgatca tgccccacaa tggaacccaa gtgcgtccgg ccagctccgt gtccacacag 1981 acggcccaga accagagtct gctgaaggcg aagatgcgca acaagcagca gccggtgcga 2041 cccgcactgc ccaccctgaa gacggagaat ggtcaggtcg ggggccagaa caaggtggtg 2101 ggtcacctga ccaccgtgca gcagcagcag caggcgacga atctccagca ggtggtcaat 2161 gcggcgggca acaaaatggt ggtgatgagc acgacgggca ctcccatcac cctccagaat 2221 ggccagacgc ttcactcggc caccacggga gtggacaagc agcaacagca gctgcagcta 2281 atccagaagc agcagttcct gcagcagcag atgttccagc agcagatcgc cgccatccag 2341 atgcagcagc aggcggcagt gcaggcgcag cagcaacagc agcagcaaca agtctcccag 2401 cagcagcagg tgaacgccca gcaacagcaa gcggtggcgc agcagcagca ggcggtggcg 2461 caggcccagc agcagcagag ggagcagcaa cagcaggtcg cccaggctca ggcgcagcag 2521 cagcaggcac tcgccaacgc cactcagcag atcctccagg tggcgcccaa ccagttcatc 2581 acctcccacc agcagcagca gcagcagcag ctccacaacc aactgatcca gcagcagctg 2641 cagcaacagg cgcaggcgca ggcacaggtt caagcccagg tgcaggccca ggcgcagcag 2701 cagcaacagc agcgggagca gcagcagcag cagcagcaga acatcatcca gcagattgtg 2761 gtgcagcagt cgggcggagc cagcgcccag cagcagcagc agcaggcaca acagcaatct 2821 ggacagctgc agctgagcag cgtgcccttc tcggtttcct cgacgacgac gccagccgga 2881 atagccacct ccagtgccct gcaggcagct ctctccgcct cgggcgccat cttccaaaca 2941 gccaagcccg tcacgtgcag ctcctcctcc ctgcccacca gcagtgtggt caccatcacc 3001 aaccagagca gcactcccct ggtcaccagc agcacggtgg ccagcatgca ggcacaggct 3061 caagctgctc agatccacca gcagcagcag cagctgatca gcgccaccat tgcagcagca 3121 tctcaacaac agcagcaaca gggaccacct tcactgacgc ccaccacgcc ctcacccacc 3181 accaatccca ttctggccat gacctcgatg atgaatgcca cggtgggcca cctgtctacc 3241 gctccgcccg tgactgtttc tgtgaccagc accgctgtca ctccgtcgcc gggtcagctg 3301 gtcacgctga gcagtgccag cagcggagga ggaagttttc ccagcacgcc ctccaaggag 3361 acaccttcgc gagtgcccac cgccaccctg gtgcccattg attcacccat gacgcctgtt 3421 tcgggccagg acagctgcag cacacccaag tcctccactc ccgccaatgt cagtgcgtcc 3481 gtggaggcca gtagttccac gagtgaggct ctgcccaacg gggaagccac ggatagggcc 3541 tccacgcctt caaaggccgc cacgactccc accagtaaac agagcaatgc ggtgcagcca 3601 acgagcagct gctccactcc caccagtgcc agtggaaagg aagagcccaa ggtggcgacc 3661 tcagtcagtt caacgtccgc aacttcaacg ccaacgacga cgacgatcag caatgggatt 3721 gggatagcca gatcgaccgc aggcaccact gggagcacga ccgctagcac aactaccact 3781 acttgcagca cttcaaccac aagttgcacg agcatcacaa caactaccac gacgagcaac 3841 agcaatggag ccaaggatct gccgaaggca atgataaagc cgaatgtttt aacccacgtc 3901 atcgatggct tcatcatcca ggaggctaat gaaccgtttc cggtcaccag gcagcggtat 3961 gcagacaagg acgtcagcga tgagccgcca aagaaaaagg cagccatgca ggaggacata 4021 aagccaagtg gaatagcatc tgctccagcc tcggacatgg tggcctgcga gcagtgtggc 4081 aagctggagc acaagacgaa gctcaagcga aagcgctact gctcgccggg atgcgccaga 4141 caggcgaaga acggcatcgg gggagtcgga acaggagaga ccaacggcct gggaagcggc 4201 ggaatcgttg gagtggacgc catggcattg gtggacaaac tggacgaggc tatggctgtg 4261 gagaagatgc agacggaggc cctgcaggca atgtccgaaa ttcagcccat tcaggcggct 4321 cccacggagg ttccaacacc gaacacaatg ccggtgctaa cggctattcc ggcatcctcc 4381 ccactttcga tgcctctggc attgccgttg ccagttgcaa tacttccttc tgtgccattg 4441 ccgccagtcg tccctgccgg agtggtcact cccgtggccg ccgcgctgtc atccagcaat 4501 gtgaatggat cggatcgccc gcccattagc agctggagtg tggaggaggt cagcaacttt 4561 atccgagaac tgcccgggtg tcaggactat gtggacgact ttgttcagca ggagatcgac 4621 ggccaggcgc tgctgctgct caaggagaac catctggtgc acgccatggg catgaagctg 4681 ggcccagccc tcaagattgt ggccaaggtg gagtccatga aggaggttcc gccgccgggc 4741 gatgcgaagg atgcggcggc cggtggagcg caatagtgtc agcgggatga gccaggtgag 4801 atgatgcctt cgccctcgta ttccataact ccgccacctt attcgccggt gggcaggcaa 4861 accgctccat ctccgactcc aactccgacc gctcctgcca gcactccgcc agagtccgag 4921 gacagcagcg ggggcagtca cctgtgctac gacctgacca cgcgcctctg ccacgacctt 4981 cggctggagg aggagccata gctctggacc gggtccaacc gggtccttcg acgccgcccg 5041 ccagttgaat ctgattcact tgcggcgagc tgtagaactt tttttgtacg taatctaaac 5101 ctaaacctaa ctagaagatg ggtgttcgcg tagctcaaat gacaggccgc cacatgtatg 5161 ataaagcata gactgttgtc ccagtcatca attcatcaac ttgtatagaa cttcaccact 5221 actcctaagc gctgacgtat ttatttaaac gttgttaatc attacacaac gccctatggg 5281 aagagcatga aaaaatcact taaactagac gtaagctggg aatctattta cacttgcata 5341 gttagaatta aaacttaagc ctgaagtaat tcctaagtga aactgaattg aatacaacac 5401 taaacgttta atttattgat taattaaggg catgacgtca atgtaaggct cccgaaaaat 5461 gcagtcgaac ctccattgct cgaaataatt gtccaagtaa attttttatt tttttggaaa 5521 aacttgtaaa gctaacagct atattattat attttgtatt tatcagtgcg gagaacgcca 5581 gcgagatgta aggaaaagaa tataaaacct taaactgtga acaaattaag ttaggaaggt 5641 tcgagtcatg gaagttggac tgaatttacc ctagggtata catacattta cgagcatatg 5701 agaatattat aaggataaac ataattattt tgaaagttcc gtggttgtat attttttttt 5761 tttacaaaac catttttttt cctattgctg aacaaaataa aatctgtcac tgtatagtgc 5821 ttaatgaacg tgaatatatg aaa