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LOCUS XM_017140163 5857 bp mRNA linear INV 09-DEC-2024 protein (LOC108056392), transcript variant X1, mRNA. ACCESSION XM_017140163 VERSION XM_017140163.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140163.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5857 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5857 /gene="LOC108056392" /note="polyhomeotic-proximal chromatin protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056392" CDS 66..4790 /gene="LOC108056392" /codon_start=1 /product="polyhomeotic-proximal chromatin protein isoform X1" /protein_id="XP_016995652.2" /db_xref="GeneID:108056392" /translation="MNMKHAPRIRSRPNSAVTESEATPPSSPAPAPLTTSTSTSAPVK GALNAREDPQRPLRCLETLAQKAGINFDEDLAKSPSSQTSQSSPSTRTTRGAAGTPTI RRRHPLLPLTSSSRSSRSSSPSTPNSKTRGHKLEKSQSPAQQVAAATTVPLQISPEQL QQFYASNPYAIQVKQEFPTHTTGGGGTELKHAANILDVQQQMQLQQQLSDASGGGGAG GGAAGNAGAAGGAPSPANSQQSTAISTMSPMQLAAATGGVGGDWSQGRTVQLMQPSTS FLYPQMIVSGNLLHPGGLGQQPIQVITAGKPFQGNGPQMLTTTTQNAKQMIGGQAGFA GGNYTTCIPSNHNQSPQTLLISPVNVISHSPQQQQNLLQSMAAAAQQQQLTQQQQQQQ LTQQQQQQQLTQQQQQQQQQLTAALAKVGVDAQGKLAQKVVQKVTTTSSTVQAATGPG SAGTTQAQQVQQVQQQQQQTTQTTQQCVQVSQSTLPVGVGAQSVQSVQTAQLLNAGQA QQMQIPWFWQNAAGLQPFGSNQIILRNQPDGTQGMFIQQQPTTQTLQTQQNQIIQCNV TQTPTKARTQLDALAPKQQQQQGGTANQTQQQQLAVATAQLQQQQQQLTAAALQRPGA PIMPHNGTQVRPASSVSTQTAQNQSLLKAKMRNKQQPVRPALPTLKTENGQVGGQNKV VGHLTTVQQQQQATNLQQVVNAAGNKMVVMSTTGTPITLQNGQTLHSATTGVDKQQQQ LQLIQKQQFLQQQMFQQQIAAIQMQQQAAVQAQQQQQQQQVSQQQQVNAQQQQAVAQQ QQAVAQAQQQQREQQQQVAQAQAQQQQALANATQQILQVAPNQFITSHQQQQQQQLHN QLIQQQLQQQAQAQAQVQAQVQAQAQQQQQQREQQQQQQQNIIQQIVVQQSGGASAQQ QQQQAQQQSGQLQLSSVPFSVSSTTTPAGIATSSALQAALSASGAIFQTAKPVTCSSS SLPTSSVVTITNQSSTPLVTSSTVASMQAQAQAAQIHQQQQQLISATIAAASQQQQQQ GPPSLTPTTPSPTTNPILAMTSMMNATVGHLSTAPPVTVSVTSTAVTPSPGQLVTLSS ASSGGGSFPSTPSKETPSRVPTATLVPIDSPMTPVSGQDSCSTPKSSTPANVSASVEA SSSTSEALPNGEATDRASTPSKAATTPTSKQSNAVQPTSSCSTPTSASGKEEPKVATS VSSTSATSTPTTTTISNGIGIARSTAGTTGSTTASTTTTTCSTSTTSCTSITTTTTTS NSNGAKDLPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKAAMQ EDIKPSGIASAPASDMVACEQCGKLEHKTKLKRKRYCSPGCARQAKNGIGGVGTGETN GLGSGGIVGVDAMALVDKLDEAMAVEKMQTEALQAMSEIQPIQAAPTEVPTPNTMPVL TAIPASSPLSMPLALPLPVAILPSVPLPPVVPAGVVTPVAAALSSSNVNGSDRPPISS WSVEEVSNFIRELPGCQDYVDDFVQQEIDGQALLLLKENHLVHAMGMKLGPALKIVAK VESMKEVPPPGDAKDAAAGGAQ" misc_feature 4533..4739 /gene="LOC108056392" /note="SAM domain of Ph (polyhomeotic) proteins of Polycomb group; Region: SAM_Ph1,2,3; cd09577" /db_xref="CDD:188976" misc_feature order(4587..4592,4692..4697,4704..4709,4716..4718) /gene="LOC108056392" /note="oligomer interface EH [polypeptide binding]; other site" /db_xref="CDD:188976" misc_feature order(4620..4634,4638..4643,4650..4655,4665..4667, 4680..4682) /gene="LOC108056392" /note="oligomer interface ML [polypeptide binding]; other site" /db_xref="CDD:188976" polyA_site 5857 /gene="LOC108056392" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gggagagaga tagcaagaga gagtgactcg tagtcacagt ttgttgatgt gcgataaaaa 61 agaatatgaa tatgaagcat gccccacgca ttcggagccg ccccaacagt gcggtcaccg 121 aaagtgaagc aacacctcca tcgtcacctg cacctgcacc gctcaccaca tccacatcca 181 catctgcacc cgtgaaaggc gcactcaacg ctcgcgagga tccccagcga ccactcaggt 241 gcctggaaac acttgcccag aaggcgggca tcaacttcga cgaggacttg gccaagagtc 301 catcatccca gacatcccaa tcatcgccca gcaccaggac gacccgcgga gcagccggaa 361 cgcccaccat caggcggcgc cacccactat tgccactcac cagcagcagc aggagcagcc 421 ggagcagctc accaagtacg cccaactcga agacgcgcgg ccataagctg gagaagtcac 481 agagtcccgc ccaacaggtg gcggccgcca ccaccgtgcc gctccagata tcgcccgagc 541 agctgcagca gttctacgcg agcaatccct atgccatcca ggtgaagcag gagtttccca 601 cgcacacgac tggcggaggg ggaaccgagc tgaagcatgc ggccaacatc ctggatgtcc 661 agcagcagat gcagctccag cagcagctct cggatgccag tgggggcgga ggagcgggcg 721 gaggagccgc ggggaatgca ggagcagcgg gaggagcacc tagtccggcc aattcccaac 781 agtccaccgc cattagcacc atgtccccaa tgcagttggc agctgccacc ggtggcgtgg 841 gcggggattg gtcgcagggc aggacagtgc agctgatgca gccctccacc agcttcctgt 901 acccgcagat gattgtgtcc ggcaatctgc tgcaccccgg cggcctcggc cagcagccca 961 ttcaggtgat caccgccggc aagccgttcc agggcaacgg cccccagatg ctcaccacca 1021 cgacgcagaa cgccaagcag atgatcggtg gccaggcggg attcgccggc ggcaactaca 1081 ccacctgcat tccctcgaac cacaaccagt cgccccagac gctgctcatc tcgccggtga 1141 acgtcatctc ccactcgccg cagcagcagc agaacctgct gcagtccatg gccgccgcag 1201 cgcagcagca gcaactcacg cagcagcaac agcagcaaca gctcacccag cagcaacagc 1261 agcagcagct cacccagcag caacaacagc agcagcaaca gctgacggct gccctggcca 1321 aggtgggggt ggatgcgcag ggcaagctgg cccagaaggt ggtccagaag gtgaccacca 1381 ccagcagcac ggttcaggcg gcgacgggac caggatccgc tgggacgacc caggcccagc 1441 aagtgcagca ggtccaacag cagcagcagc agaccaccca aaccacccag cagtgcgtcc 1501 aggtctcgca gtcgacgttg ccagtcggag tgggcgccca gtctgttcag tctgtccaga 1561 ctgcccagct cctcaacgcc ggccaggcgc agcagatgca gatcccctgg ttctggcaga 1621 atgcggcagg actgcagccc ttcggctcca accagatcat cctgcgaaac cagccggacg 1681 gaacccaggg catgtttatc cagcagcagc cgacgaccca gaccctgcag acgcagcaga 1741 accagatcat ccagtgcaat gtgacccaga cccccaccaa ggcacgcacc cagctcgacg 1801 cactggctcc taagcagcag cagcagcagg gaggcaccgc caaccagaca cagcagcaac 1861 agctggctgt ggccactgcc cagctgcagc agcagcagca acaactcacg gcagcagctc 1921 tgcagcgacc gggggccccg atcatgcccc acaatggaac ccaagtgcgt ccggccagct 1981 ccgtgtccac acagacggcc cagaaccaga gtctgctgaa ggcgaagatg cgcaacaagc 2041 agcagccggt gcgacccgca ctgcccaccc tgaagacgga gaatggtcag gtcgggggcc 2101 agaacaaggt ggtgggtcac ctgaccaccg tgcagcagca gcagcaggcg acgaatctcc 2161 agcaggtggt caatgcggcg ggcaacaaaa tggtggtgat gagcacgacg ggcactccca 2221 tcaccctcca gaatggccag acgcttcact cggccaccac gggagtggac aagcagcaac 2281 agcagctgca gctaatccag aagcagcagt tcctgcagca gcagatgttc cagcagcaga 2341 tcgccgccat ccagatgcag cagcaggcgg cagtgcaggc gcagcagcaa cagcagcagc 2401 aacaagtctc ccagcagcag caggtgaacg cccagcaaca gcaagcggtg gcgcagcagc 2461 agcaggcggt ggcgcaggcc cagcagcagc agagggagca gcaacagcag gtcgcccagg 2521 ctcaggcgca gcagcagcag gcactcgcca acgccactca gcagatcctc caggtggcgc 2581 ccaaccagtt catcacctcc caccagcagc agcagcagca gcagctccac aaccaactga 2641 tccagcagca gctgcagcaa caggcgcagg cgcaggcaca ggttcaagcc caggtgcagg 2701 cccaggcgca gcagcagcaa cagcagcggg agcagcagca gcagcagcag cagaacatca 2761 tccagcagat tgtggtgcag cagtcgggcg gagccagcgc ccagcagcag cagcagcagg 2821 cacaacagca atctggacag ctgcagctga gcagcgtgcc cttctcggtt tcctcgacga 2881 cgacgccagc cggaatagcc acctccagtg ccctgcaggc agctctctcc gcctcgggcg 2941 ccatcttcca aacagccaag cccgtcacgt gcagctcctc ctccctgccc accagcagtg 3001 tggtcaccat caccaaccag agcagcactc ccctggtcac cagcagcacg gtggccagca 3061 tgcaggcaca ggctcaagct gctcagatcc accagcagca gcagcagctg atcagcgcca 3121 ccattgcagc agcatctcaa caacagcagc aacagggacc accttcactg acgcccacca 3181 cgccctcacc caccaccaat cccattctgg ccatgacctc gatgatgaat gccacggtgg 3241 gccacctgtc taccgctccg cccgtgactg tttctgtgac cagcaccgct gtcactccgt 3301 cgccgggtca gctggtcacg ctgagcagtg ccagcagcgg aggaggaagt tttcccagca 3361 cgccctccaa ggagacacct tcgcgagtgc ccaccgccac cctggtgccc attgattcac 3421 ccatgacgcc tgtttcgggc caggacagct gcagcacacc caagtcctcc actcccgcca 3481 atgtcagtgc gtccgtggag gccagtagtt ccacgagtga ggctctgccc aacggggaag 3541 ccacggatag ggcctccacg ccttcaaagg ccgccacgac tcccaccagt aaacagagca 3601 atgcggtgca gccaacgagc agctgctcca ctcccaccag tgccagtgga aaggaagagc 3661 ccaaggtggc gacctcagtc agttcaacgt ccgcaacttc aacgccaacg acgacgacga 3721 tcagcaatgg gattgggata gccagatcga ccgcaggcac cactgggagc acgaccgcta 3781 gcacaactac cactacttgc agcacttcaa ccacaagttg cacgagcatc acaacaacta 3841 ccacgacgag caacagcaat ggagccaagg atctgccgaa ggcaatgata aagccgaatg 3901 ttttaaccca cgtcatcgat ggcttcatca tccaggaggc taatgaaccg tttccggtca 3961 ccaggcagcg gtatgcagac aaggacgtca gcgatgagcc gccaaagaaa aaggcagcca 4021 tgcaggagga cataaagcca agtggaatag catctgctcc agcctcggac atggtggcct 4081 gcgagcagtg tggcaagctg gagcacaaga cgaagctcaa gcgaaagcgc tactgctcgc 4141 cgggatgcgc cagacaggcg aagaacggca tcgggggagt cggaacagga gagaccaacg 4201 gcctgggaag cggcggaatc gttggagtgg acgccatggc attggtggac aaactggacg 4261 aggctatggc tgtggagaag atgcagacgg aggccctgca ggcaatgtcc gaaattcagc 4321 ccattcaggc ggctcccacg gaggttccaa caccgaacac aatgccggtg ctaacggcta 4381 ttccggcatc ctccccactt tcgatgcctc tggcattgcc gttgccagtt gcaatacttc 4441 cttctgtgcc attgccgcca gtcgtccctg ccggagtggt cactcccgtg gccgccgcgc 4501 tgtcatccag caatgtgaat ggatcggatc gcccgcccat tagcagctgg agtgtggagg 4561 aggtcagcaa ctttatccga gaactgcccg ggtgtcagga ctatgtggac gactttgttc 4621 agcaggagat cgacggccag gcgctgctgc tgctcaagga gaaccatctg gtgcacgcca 4681 tgggcatgaa gctgggccca gccctcaaga ttgtggccaa ggtggagtcc atgaaggagg 4741 ttccgccgcc gggcgatgcg aaggatgcgg cggccggtgg agcgcaatag tgtcagcggg 4801 atgagccagg tgagatgatg ccttcgccct cgtattccat aactccgcca ccttattcgc 4861 cggtgggcag gcaaaccgct ccatctccga ctccaactcc gaccgctcct gccagcactc 4921 cgccagagtc cgaggacagc agcgggggca gtcacctgtg ctacgacctg accacgcgcc 4981 tctgccacga ccttcggctg gaggaggagc catagctctg gaccgggtcc aaccgggtcc 5041 ttcgacgccg cccgccagtt gaatctgatt cacttgcggc gagctgtaga actttttttg 5101 tacgtaatct aaacctaaac ctaactagaa gatgggtgtt cgcgtagctc aaatgacagg 5161 ccgccacatg tatgataaag catagactgt tgtcccagtc atcaattcat caacttgtat 5221 agaacttcac cactactcct aagcgctgac gtatttattt aaacgttgtt aatcattaca 5281 caacgcccta tgggaagagc atgaaaaaat cacttaaact agacgtaagc tgggaatcta 5341 tttacacttg catagttaga attaaaactt aagcctgaag taattcctaa gtgaaactga 5401 attgaataca acactaaacg tttaatttat tgattaatta agggcatgac gtcaatgtaa 5461 ggctcccgaa aaatgcagtc gaacctccat tgctcgaaat aattgtccaa gtaaattttt 5521 tatttttttg gaaaaacttg taaagctaac agctatatta ttatattttg tatttatcag 5581 tgcggagaac gccagcgaga tgtaaggaaa agaatataaa accttaaact gtgaacaaat 5641 taagttagga aggttcgagt catggaagtt ggactgaatt taccctaggg tatacataca 5701 tttacgagca tatgagaata ttataaggat aaacataatt attttgaaag ttccgtggtt 5761 gtatattttt tttttttaca aaaccatttt ttttcctatt gctgaacaaa ataaaatctg 5821 tcactgtata gtgcttaatg aacgtgaata tatgaaa