PREDICTED: Drosophila takahashii achaete (ac), mRNA.

LOCUS       XM_017139942            1130 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017139942
VERSION     XM_017139942.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139942.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1130
                     /gene="ac"
                     /note="achaete; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 Proteins"
                     /db_xref="GeneID:108056228"
     CDS             63..716
                     /gene="ac"
                     /codon_start=1
                     /product="achaete-scute complex protein T5"
                     /protein_id="XP_016995431.2"
                     /db_xref="GeneID:108056228"
                     /translation="MALGSENQSFFYDDEESSSSSPVTTGPSVIRRNARERNRVKQVN
                     NGFSQLRQHIPVAVIADLSNGRRGIGPGANKKLSKVSTLKMAVEYIRRLQKVIDETDQ
                     QKQQQQQLQLQQQHMQFHQQQQHEQLQQQQQQHFYAWQQQLQLQSPTGSVSSCNSNSS
                     SNSYYTPATSTITAATPSSHVVPKLENSYEDYRNNSCSSGAEDEDILDYISLWQDDL"
     misc_feature    144..353
                     /gene="ac"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     Drosophila melanogaster achaete-scute complex (AS-C)
                     proteins and similar proteins; Region: bHLH_TS_dAS-C_like;
                     cd19744"
                     /db_xref="CDD:381587"
     misc_feature    order(147..149,159..161,165..173,177..179,192..194,
                     288..299)
                     /gene="ac"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381587"
     misc_feature    order(186..191,198..203,207..212,300..302,309..311,
                     321..323,327..332,342..344,348..353)
                     /gene="ac"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381587"
ORIGIN      
        1 tcaagaagag atcatcttgt atatcttcaa ctacattcga aattctataa tacaaacgaa
       61 aaatggctct gggcagcgag aatcagtcct ttttctacga cgatgaggag tcttcatcat
      121 catccccggt caccactggg ccctcagtca tccggcggaa tgcccgggaa cgcaatcgcg
      181 tcaagcaggt caacaatggc ttcagccaac tgcggcaaca cattcccgtc gccgtgattg
      241 ccgatctgag caatggtcgt cgtggaatcg gcccaggtgc caataaaaaa ttgagcaaag
      301 tcagcacact gaaaatggcc gttgagtata tacgccgatt gcagaaagtc attgatgaaa
      361 ccgatcagca gaagcagcag cagcaacagt tgcagttgca gcagcaacat atgcaattcc
      421 accagcagca gcaacatgag caacttcaac agcaacagca gcaacacttt tacgcctggc
      481 aacaacagtt gcagttgcaa tcgcccactg gcagcgtgag ttcctgcaac agcaacagca
      541 gcagcaactc ctattacaca ccagcaacat cgacgattac ggcagcaaca ccttcgtcgc
      601 atgttgttcc caagctggaa aacagctatg aagactaccg caacaattcc tgcagttcgg
      661 gcgccgaaga cgaggacatc ctcgactata tttccctgtg gcaggatgat ctgtagggaa
      721 atcccttcga aaatctcctg caattgctag tcgcacacac acaacgaacc attgattggc
      781 caacaaaagt attacctcag ccacaaagta tttatgtaac ccaaaacgaa ccaccttttt
      841 ttttcctgta caaattagtt gttaagtttt tatatagttt ataagtctta gcttgtagaa
      901 aaatggaaga caatttatac ttaagaatct ctttttttta aaacaaacat ggaggacatt
      961 aaactgatat tttattacaa tgaaattttt taatgagttt attttatgtg gaaaatggtt
     1021 tgggtttggg gatgaaaaat taaatcatct taaatttctg atactttaaa gatttttaca
     1081 aatgttcttt tctgttttat ttatcttgtt ttctctcaaa atttcagtta