PREDICTED: Drosophila takahashii achaete-scute family bHLH

LOCUS       XM_017139939            1416 bp    mRNA    linear   INV 09-DEC-2024
            transcription factor scute (sc), mRNA.
ACCESSION   XM_017139939
VERSION     XM_017139939.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139939.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1416
                     /gene="sc"
                     /note="achaete-scute family bHLH transcription factor
                     scute; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 Proteins"
                     /db_xref="GeneID:108056225"
     CDS             135..1163
                     /gene="sc"
                     /codon_start=1
                     /product="achaete-scute complex protein T4"
                     /protein_id="XP_016995428.2"
                     /db_xref="GeneID:108056225"
                     /translation="MSSSVLTTTNHNNDLFPTTINTATKIFRYQHIMPAPSPSANQNQ
                     PGGMPIKTRKYTPRGMALAGRSSSDSVSSASISPGSSPAPYNVDQSQSVQRRNARERN
                     RVKQVNNSFARLRQHIPQSIISDLTKGGGRGPHKKISKVDTLRIAVEYIRRLQDLVDD
                     LNGGSSSTPSGVSTAQLQLCLEDDEDEECSSHSSSSSNCSAYYQNSATTNANPLQQQQ
                     QLQRQQFNHQPLTAISLNSNSLSGNGNGGATITTSNQQTTTTCHSPTSSFNSSMSFDS
                     GTYEAAPQQLSNHHLDHLDHHHHLHNDGHSQLQLKFEPYEHFQLDEEDCTPDDEEILD
                     YISLWQEQ"
     misc_feature    408..608
                     /gene="sc"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     Drosophila melanogaster achaete-scute complex (AS-C)
                     proteins and similar proteins; Region: bHLH_TS_dAS-C_like;
                     cd19744"
                     /db_xref="CDD:381587"
     misc_feature    order(411..413,423..425,429..437,441..443,456..458,
                     543..554)
                     /gene="sc"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381587"
     misc_feature    order(450..455,462..467,471..476,555..557,564..566,
                     576..578,582..587,597..599,603..608)
                     /gene="sc"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381587"
ORIGIN      
        1 cgatcaagtt caagccttcc acctctcctc attacactat atattttttt ctgttgatcg
       61 tactcagact gacaatataa aaaataaaaa ccgtgtgtgt ttatgagaaa atattaaata
      121 aaaatccaat aaccatgtca tcgagtgtgc tgaccacgac gaaccacaac aacgatctat
      181 tccccaccac catcaacacg gcgaccaaga tctttcgcta tcagcacata atgccggctc
      241 ccagtccatc ggctaatcaa aatcaaccgg gtggaatgcc catcaagacc cgcaagtata
      301 cgcccagggg catggcgttg gccggtagat cctcctccga ttcggtatca tccgcatcca
      361 tatcgcctgg ctcctcgccg gctccctaca acgtggacca atcgcagtct gtccagcgac
      421 gcaatgctcg cgaaaggaat cgggtgaagc aggtgaacaa tagcttcgcc cggttgcgcc
      481 aacatatccc acagtccatc atctcggatc tcaccaaggg cggtggtcga ggtccgcaca
      541 agaagatatc caaggtggac acgctgcgca ttgccgtcga gtatatacgc agacttcagg
      601 atctggtgga tgatctgaac ggaggatctt cctctactcc gagtggagtt tccaccgccc
      661 agttgcaact ttgtctggag gacgacgaag atgaggagtg cagcagccac agttccagca
      721 gcagcaattg cagtgcctac tatcaaaatt cagcgacgac gaatgctaat cctctccagc
      781 aacagcagca attgcagagg caacagttta accaccaacc gctgacagcc atctccttga
      841 atagcaattc cttgtctgga aatggaaatg gaggcgcaac aattactacc agcaatcagc
      901 agaccaccac cacctgccac tcacccacct cctccttcaa ctccagcatg tccttcgatt
      961 cgggaaccta tgaggcggct ccccagcaac tgtccaatca tcacctggat catctggatc
     1021 atcatcacca tcttcataac gatggtcact cgcaactcca gctgaaattc gagccctacg
     1081 aacacttcca attggacgag gaggactgca cgcccgacga cgaggagatt ctggactaca
     1141 tttctctctg gcaggagcag taaatcctaa aggtcctgca aaacacatcc caccatcctc
     1201 ctgttctctt ctagtcaatg ttgagttgaa ccaagtgcct caaattgtaa ataacactca
     1261 tatgcagaca cacacacatt ttttttccta ctataagtta attttttttt acataaatta
     1321 agaaccaaga aaccagtatc aaatatatat ttataaaata attatagcaa gacatcacta
     1381 ctcttttttt ttttgcgcaa atacaattac atgtta