PREDICTED: Drosophila takahashii probable E3 ubiquitin-protein

LOCUS       XM_017139848            1470 bp    mRNA    linear   INV 09-DEC-2024
            ligase makorin-1 (LOC108056152), mRNA.
ACCESSION   XM_017139848
VERSION     XM_017139848.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139848.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1470
                     /gene="LOC108056152"
                     /note="probable E3 ubiquitin-protein ligase makorin-1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins"
                     /db_xref="GeneID:108056152"
     CDS             152..1198
                     /gene="LOC108056152"
                     /codon_start=1
                     /product="probable E3 ubiquitin-protein ligase makorin-1"
                     /protein_id="XP_016995337.2"
                     /db_xref="GeneID:108056152"
                     /translation="MSLSRSQTLCRYYLIGICRFGNMCRFSHDLSNQKKASPNPGDPT
                     TNPGELKDEQVVASTSSFSRQRIWANAPVFVPMNPAENDSSEYPGDICPQAGQCVLGD
                     RCPFSVHLELCEMCHLYCLHPRDPEQRRQHNRECLEQHEQAMELSFAMARSKDKMCGI
                     CFDTVVEKEERSERRFGILSKCNHIFCIDCIRRWRQAKQFENKVTRACPECRVCSDFV
                     CPSAFWVDTKEEKDKLLSDYRSALGAKDCKYFRLGEGRCPFGNKCFYKHALPNGTIVD
                     VGLPRRICPKNQNNQLNQRPQNQSIDNNDSDSDLMDFLDYYPWRMADRLDQHWLELFF
                     SDLSDISEGSEDDN"
     misc_feature    173..238
                     /gene="LOC108056152"
                     /note="CCCH-type zinc finger; Region: zf-CCCH_4;
                     pfam18044"
                     /db_xref="CDD:465626"
     misc_feature    <443..865
                     /gene="LOC108056152"
                     /note="p28-like protein; Provisional; Region: PHA03096"
                     /db_xref="CDD:222981"
     misc_feature    614..796
                     /gene="LOC108056152"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(623..625,632..634,695..697,701..703,710..712,
                     719..721,773..775,782..784)
                     /gene="LOC108056152"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
ORIGIN      
        1 tactagtagc cttagcccta ctattttcga gagatactat ttgccgagaa attccaacta
       61 agattttaca caagaaatat tttttttttt aattttgcaa cgccttttga aaaccaataa
      121 ccgtaatcag aattcatcag atcatcacag aatgtcgcta agccgcagtc aaaccctctg
      181 ccgctactat ttgattggca tctgtcgctt tggcaatatg tgtcgcttct cccacgattt
      241 gagcaaccaa aagaaagcga gtcccaatcc tggagatcca actaccaatc ctggagagct
      301 gaaggatgag caggtggtgg ccagcacgag tagcttcagt cggcagagga tctgggcgaa
      361 tgcaccggtt tttgtgccta tgaatccggc cgagaatgat tcttcggaat atcccggtga
      421 tatctgtcca caggcgggtc agtgtgtcct aggcgatcgc tgtccctttt ccgttcacct
      481 ggagctctgc gagatgtgcc acctgtactg cctgcatccc cgggatccgg agcagcgaag
      541 gcaacacaat cgcgagtgtt tggagcagca cgaacaggcc atggagttgt cctttgcgat
      601 ggcccgttcc aaggacaaga tgtgcggcat ctgcttcgac acggtggtgg agaaggagga
      661 gcgcagcgaa aggcgcttcg gaatcctctc caagtgcaat cacatcttct gcatcgactg
      721 catccgccgg tggcgccagg ccaagcagtt cgagaacaaa gtgacccgag cctgtcccga
      781 gtgtcgcgtc tgctcggatt tcgtgtgccc cagcgccttt tgggtggaca ccaaggagga
      841 gaaggacaag ctgttatcgg actatcgttc cgcgttgggc gccaaagatt gcaagtactt
      901 tcgcttgggc gagggacggt gtccctttgg caacaagtgc ttctacaagc atgctttgcc
      961 caatggcact atcgtcgatg tgggactgcc gaggagaatc tgccccaaga accagaataa
     1021 ccaactgaac caacggcccc aaaatcaaag catcgataat aacgatagcg atagcgatct
     1081 aatggacttt ctcgactatt atccatggcg aatggcagat cggctggacc aacattggct
     1141 cgagctgttt tttagcgatt taagcgatat ttccgagggc tcagaggatg ataactaaga
     1201 tatccaagaa gaagttggtg aacatgaagt agcagaagga accgaacata tatttggaca
     1261 tggcatccca gaaaagccca atcagacgat tatatgtatg acactgaacg cacacatatt
     1321 tatcacatcc caaattacac agaaattgcc aaattcaggt ttacatcgtt attcgcattt
     1381 cacctcgctt aatgttaaaa attttccgta tttgtattaa ataaaattac atttgacacc
     1441 aataaagttt gcaagtataa aatacaaaaa