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PREDICTED: Drosophila takahashii cyclin D (CycD), mRNA.


LOCUS       XM_017139843            2370 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017139843
VERSION     XM_017139843.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139843.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..2370
                     /gene="CycD"
                     /note="cyclin D; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins"
                     /db_xref="GeneID:108056149"
     CDS             493..1908
                     /gene="CycD"
                     /codon_start=1
                     /product="G1/S-specific cyclin-D2"
                     /protein_id="XP_016995332.2"
                     /db_xref="GeneID:108056149"
                     /translation="MDLLCSENLVFESDSSLYRLNQRQQEMSVSAPYPLSIKPDSDPQ
                     TDRETVQSPSDFNQNNNNTVVCNMKEIVYIYASVEEAAKNTEELEPSVPEPKPQSLLQ
                     SQSQSQLQSQRYNDRLPKTAQDSPAADNVNTAIGDPTLYSDRCLENALKAEEKHHQMD
                     QVDTYFAIQKDITPPMRKIVAEWMMEVCAEENCQEEVVLLALNYMDRFLSSKSVRKTH
                     LQILAAACLLLASKLREPSCRALSVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSS
                     VTPLDFLELLMMRLPIGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASS
                     IAASMNGLKWHLRSGHNLHFLLSLMTDLTSVEQAQVQDCMLHMEDIFKEHSRNLQPFL
                     VNIDPSQMSTLYYQGRFQIHQSQHLSQISIRSLPLPKTPADCGEQHQQQHNFGSSSAP
                     HRTHTCKMQAQAQNELQDVTF"
     misc_feature    859..1311
                     /gene="CycD"
                     /note="Cyclin box fold superfamily; Region: CYCLIN_SF;
                     cl40454"
                     /db_xref="CDD:477360"
     misc_feature    1324..1638
                     /gene="CycD"
                     /note="second cyclin box found in cyclin-D (CCND) family;
                     Region: CYCLIN_CCND_rpt2; cd20516"
                     /db_xref="CDD:410220"
ORIGIN      
        1 ataaggtgta actagctggt tcatataaat gctttgtcca cgccggttaa gtggcaaacg
       61 tgtgcaactt cgagtttatt ttccccaata actgagttat tccatcaaat ggagatcggt
      121 gcagtttgga tatagttcga gatcgtcgaa atgtgctcat tccgatcgta gcacaatttg
      181 ttggcgatca aatcgatcac atatatattt gtcgaaaaca tatgtaaata aagacatgta
      241 atgtgcataa gaggaaatca aagtagtgcg tgtatgtatt tacatatgta tgtgcatata
      301 agccattgaa ggatcgagta taataataaa atgaatactt gtatgtgaag agaaggctgc
      361 aatatatgta cttacgatcg cttcgtattg tacgcagtat tcgatatccc agagttgccc
      421 agagttcttg ataattcggc acacataaat ggcttaaggg tgcctcgaac cgaaccgaac
      481 ctccaagaaa caatggatct tttatgttcg gagaacctgg tttttgaatc tgattcatcg
      541 ttgtatcgcc tgaaccaacg ccaacaggaa atgtcagtgt ctgcgccata tccattgtcg
      601 ataaaacccg attccgatcc ccaaacagat cgagaaacag tgcaaagtcc ttcggacttc
      661 aaccagaaca acaacaacac cgttgtgtgc aatatgaagg agattgtgta tatatacgca
      721 tcggtcgaag aagctgcgaa gaatacagaa gaactggaac catcagtacc ggaaccgaag
      781 ccacagtcgc tcctacaatc ccaatcccaa tcacaattac agtcccagcg atacaacgat
      841 cgactgccca agacagccca agattcaccc gcagcagaca acgtgaacac agccatcggg
      901 gatcccacat tgtattcgga tcggtgcctg gagaatgccc tcaaggccga ggagaagcac
      961 caccagatgg accaggtgga cacctacttc gccattcaga aggacataac gccgccaatg
     1021 cggaagattg tagccgaatg gatgatggaa gtgtgtgctg aggaaaattg ccaggaagag
     1081 gtcgtgctgc tggccttgaa ttacatggat cgatttcttt cgagcaaatc ggtgcgcaag
     1141 acccatctgc aaatattggc tgctgcctgt cttctacttg cctccaagct ccgtgagccc
     1201 agctgtcgtg cactttcggt ggatttgctg gttgtttata cggacaacag catatacaag
     1261 gacgatttga taaaatggga gctgtatgtg ctgagccgat tgggttggga cctttcgtcc
     1321 gtgactcctc tggatttcct tgagctcctg atgatgcgcc tgccgatagg aagtaaaaac
     1381 ttcccggaca taaacattgg caaggtcagg ggacatgctc aggcatttat atcgctggcg
     1441 gcaaaagaac acaagtttgc caagttctcg gccagcacaa tagctgcatc gagcatcgct
     1501 gcttcgatga atggcttgaa gtggcatctg cggtcgggtc acaacctgca tttcctgttg
     1561 agtctgatga ccgacctgac cagcgtggag caagctcagg tgcaggattg catgttgcac
     1621 atggaggaca ttttcaagga gcacagtcga aacctgcagc cctttctcgt caacatagac
     1681 ccctcgcaaa tgtcaacgct atactaccag ggtcgttttc aaatacacca atcgcagcac
     1741 ctctcgcaaa tctcaatacg atcgctacct ctgccgaaaa cgccagccga ctgtggggaa
     1801 caacatcagc agcagcacaa ctttgggtcc tcatcggcgc cgcatcgaac gcatacgtgc
     1861 aaaatgcagg cgcaggctca gaacgagctg caagacgtta cattttgagg tgtcaattag
     1921 gaatacaaca agatagcttg ttagctagat ttaaggctaa tatatagtat atatgctact
     1981 tcttttgcta ctgtatagga tcacgttaac attgtattcc taacgactgt aagattggtc
     2041 aatattcgat tattattgcg tctatatcga tgtattttta ttcacccaac tatttttacc
     2101 aatttatggg cctgtaattt agtagctatc attagtactt tgtataaaat agcgttagat
     2161 aatcatcatg aaactttaaa atggaaaaaa acattaaaac gagactgatt gtaaacagta
     2221 aagcaacatt ttatattgtg tgtaaataag cttttcgaaa acctacccat ttaaccaaaa
     2281 aataacgaac tattaaaata aacgttttac aaaaaccatc caacgtaaaa gaataacaat
     2341 atgttaaagt taaatttaac acaaaatttg