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LOCUS XM_017139836 2538 bp mRNA linear INV 09-DEC-2024 (LOC108056141), mRNA. ACCESSION XM_017139836 VERSION XM_017139836.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139836.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2538 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2538 /gene="LOC108056141" /note="protein tramtrack, beta isoform; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056141" CDS 615..2156 /gene="LOC108056141" /codon_start=1 /product="protein tramtrack, beta isoform" /protein_id="XP_016995325.2" /db_xref="GeneID:108056141" /translation="MSGVTQEFCVRWNSHLGSIGAAFPQLLAGQRFVDVTLACEGTQV HCHRLVLAACSTYFEAILAEHPCKHPVIILPREIKLWEIQALVDFMYKGEVNVTQAGL GQLLRCAEQLQIRGLYGSEATINYKKLHQASLEAGGSKDLLAGAQRSIKHVDSTETDD AATNSTTSTITTSSALPVNQQQQQQQQQQQPQHQPTVLKRQNQDVRQQQQQQRPQLNG SNAQQQPTSKGSHSNAPTEEDSGDEVSNNWSAYGEPFEDVQAVAGKMNAQMSLQQTRI QMQLQQQHYLDSQIEDDHNYVAAHDENNESSSFAAGMASSVGLDTDLIDTSANTSGGL LSHNSIDGYTSYKRVRRSEASLAQAAKCVSKGETFQTVSNMFNIPVSTIRFYMARKGI LPKRKRGRGASHAGNIIITTNSGKLSTVPASATHSQSQSQSHPHHLHLQSSQSHPQSQ SQMSLDGLQLKTGSGSNSPAAATATSMSPSFDMASSGADIVPFHLHSDAAAAFKLNDQ KLHMI" misc_feature 708..962 /gene="LOC108056141" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 1728..1817 /gene="LOC108056141" /note="MerR family regulatory protein; Region: MerR; pfam00376" /db_xref="CDD:425647" polyA_site 2538 /gene="LOC108056141" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acgcgtagtt taaataacaa ttgattgcta cagaagttga cagcgcgaaa gacaatatta 61 atttaataat ttacatgtaa ttcgagggca actttatcac acggcgaata cttattagca 121 ttagaagcga accagtttgg caaacgaatt tggcatttat ttgttgatag tgtgtgtgaa 181 gacaaaacaa acgaaaagca catcgaaaaa aaaagataaa aacgcgcgca tgcagcattt 241 ttggttaaaa taaacatcaa taaagtgtac atttgaatgg gatgctcgat acgcgatggg 301 ggataatgaa taggaacctt ggttagtgcc cgtaatgaac aaattgctgt gtttttgtgg 361 cccattcggt gcagaaatag tgtattttta aacaagactc tggtacatag catagctcac 421 gcgcacagga caccaggcag tcctaacata aaattctcgc ctcacatcca ttgtgttaca 481 tagcgaacaa atccaaagca gagctaaagt ttcgattcct tggccaaaca ggatacacaa 541 ggatctttaa atgagagaat agttttgcgg agaaacgtgc acagcaaagg cgccaatata 601 tttcgagcga tacgatgagc ggcgttaccc aggaattttg tgtacgctgg aacagccact 661 tggggagcat tggggctgcg tttccgcagc tcctggcggg ccagcgattt gtggacgtga 721 cactggcctg cgagggcacc caggtgcact gccatcgcct cgtcctggcc gcctgctcca 781 cctacttcga ggcgatactg gccgagcatc cgtgcaagca tcccgtcatc atattgcccc 841 gtgagatcaa gctatgggag atccaggccc tggtcgactt catgtacaag ggcgaggtca 901 atgtcacgca agcgggtctt ggccagctgc tccgttgtgc cgagcagcta cagatacgcg 961 gcctctacgg ttccgaggcg acgataaact acaagaagct ccatcaggcg agccttgagg 1021 ctggaggatc caaggatctc ttggcaggcg cacagcgaag cattaagcat gtggacagca 1081 cggagacgga tgatgcagcc actaattcaa ccacctcaac gataaccacc tcctccgctc 1141 taccagttaa ccagcaacag cagcagcagc aacagcagca gcagccgcaa catcagccga 1201 cagtattgaa gcgccaaaat caggatgtcc gccagcagca gcagcagcag cgacctcagt 1261 taaatggcag caatgctcaa caacagccaa catccaaggg cagccactcg aatgccccga 1321 ccgaagaaga ctccggcgac gaggtgtcca acaattggag tgcctacggg gagcccttcg 1381 aggatgtgca ggcggtggcc ggcaaaatga atgcccaaat gtccctgcag cagacgagga 1441 tacaaatgca gctgcagcag cagcactatt tggattccca aattgaggac gatcacaact 1501 atgtagccgc acacgatgag aacaatgaga gcagcagttt cgctgcagga atggcctcct 1561 ccgtcggcct ggacactgat ctcatcgaca catcggccaa cacttccggc ggactgctca 1621 gtcacaattc aatcgacggc tatacctcat acaaacgcgt acgacgctcg gaggcatcgc 1681 tggcacaggc ggccaaatgt gtttcgaagg gcgagacatt ccaaacggtc agcaatatgt 1741 tcaatattcc cgtctccacc attcgtttct atatggcgcg aaagggtata ctgccgaaac 1801 ggaaacgcgg acgcggtgct tcccatgccg gcaacataat aatcacaaca aactcaggaa 1861 aactctcaac cgtccctgcg agcgccaccc attctcagtc tcaatctcag tcgcatcccc 1921 atcatctcca tctccaatca tctcaatcgc atccccagtc tcagtctcaa atgtccttgg 1981 acggcctgca gctaaaaacg ggcagcggta gcaatagtcc ggcagctgca acggccactt 2041 cgatgtcacc atcatttgat atggcctcct cgggagcgga tatcgtgcct tttcacctgc 2101 acagtgatgc ggcggcggca ttcaagctca acgatcagaa gctgcacatg atctaggggc 2161 aaatattgat agagaggatg agggagtttt ccaagcagtt gctgctttcc ttttcatttt 2221 ttcattttaa ttgtgggatc tttagtcata acaaaatagt caacaaaata aaatttactc 2281 ttagatttat ttgaatacgc tttgaagtta acggttttac atccttggtt gattctactc 2341 actgttattc aaccattatt catcgtcaaa aaaaatttca gaaattatat acattatatt 2401 aacagtagaa gtacactcta tcaaggacta tgactaaaac ttgcgtaaaa atttcaaaat 2461 ctgtttattg tcgccccagt actctaagaa attactgtat tgttaataag ataaataaaa 2521 tcaacctgga aactttta