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LOCUS XM_017139834 3948 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017139834 VERSION XM_017139834.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139834.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3948 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3948 /gene="Pdzd8" /note="PDZ domain containing 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056140" CDS 328..3513 /gene="Pdzd8" /codon_start=1 /product="PDZ domain-containing protein 8" /protein_id="XP_016995323.2" /db_xref="GeneID:108056140" /translation="MEIPISNILLLCLIFLLIGGVVMILLQYLIFIKFSNLPDESEEQ KQMNAKYTLPLNIKQTARNLKRLSNSGMGGGGGGAGGAGNGCENHQESLRRASALVSL NFVMQFLFHEFKNSNRVRKWFYRKLSIELDELITKTTTGKLLDKLTIKELELGDQFPD IRSLSVHNVELDKDEQRIENLDLLLDINYVGNFTTSIDADMVLGKKGSITLKVKQLSG MARLQFTRKPYTHWSISFLGDPELILDIESKYQGRQMQSNITNLISNQIRKAVRRKHT LPNYKLRYKPFFHWTAADVDADAADCDIQPNGVLQVKLAELSRLIAYPGASDTYCTIT LAPVPFIEANQRDSRNVLISMDVFIHKAKNQQIGIVFKQSGSQVVRIESVLPNTPACK SNLLAGDVLVAIEGRPVTTIQQIAKVVKTLQATVFSLRIERIIPGIIRNDAILEDFDK YEDLGDLPQANRMVDAEAEVADPPLPKHLVVKPSLSGTPTNSPKKSNLIAKAIKKTMS RDAGDKDKDKDKDKVTDKDKDKDKDKDKEKDKVTDKDKDKEKEAEEPAVNYFYQHSTI DCAFSPLIHMDDLCSFQLDNSSRFLNVCVFGKTSAGESVLLGYHNVQIGQILVECSET SLNQCLKQISLNPASLQAVKTHPLSNQSGFNPNLCFGDILFGFSWLGNPNLTLGEGSL KGGSSPKSQSQTQTRNDRVAVEDQFLKVTSTPAADSSTAAGSGSDSSSVQTSGLPRAH DFVRTHFHRATQCDFCGKKIWLKDAMQCRECSMSCHKKCIVKCQMATVCGPVDCSGST AAMISRPEFTITQADPDNPEILDGSTPGSSVLDETASLASSVGSTAASGGDQGQSIQT PTASAGLDVHRSSLTGMLAQGIKRQASNLDIPGIVSSLTGGQQMNSKSLPPSPQHTPS RKSSIVEEAPNLQQNPFESVTQHLEALPLDCPELSFEQVIVITEPIVRHTRHEDLMNL AKSTSKHLYVGLPPDERVAKINELLTKLKVALDAETEGYTQMNDAERATEIHGQSPWK SDRSDERVQALSIIMLYLCTGLQHAQGVVLQ" misc_feature 625..1191 /gene="Pdzd8" /note="synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in PDZ domain-containing protein 8 (PDZD8) and similar proteins; Region: SMP_PDZD8; cd21674" /db_xref="CDD:439230" misc_feature order(694..696,703..708,718..720,730..732,787..789, 802..804,886..888,904..906,910..912,916..918,967..969, 973..975,985..987,991..993,1021..1023,1027..1029, 1033..1035,1063..1065,1126..1128,1135..1140,1159..1161, 1165..1176) /gene="Pdzd8" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:439230" misc_feature 1465..1626 /gene="Pdzd8" /note="PDZ domain; Region: PDZ_6; pfam17820" /db_xref="CDD:436067" misc_feature 2536..2697 /gene="Pdzd8" /note="protein kinase C conserved region 1 (C1 domain) found in PDZ domain-containing protein 8 (PDZD8) and similar proteins; Region: C1_PDZD8; cd20825" /db_xref="CDD:410375" polyA_site 3948 /gene="Pdzd8" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcaaatacat attgatttta tgtcgcccgt acagtggttg taacaattgt cagtttacaa 61 gtttacagct aactgctagc tagctggaaa ccagcctcat attggcgaaa tcgacagggg 121 taccacccaa atggatgggg catccaaatc gatacacacc aaaactgggc gatacaatgc 181 gagcacgagc acatccagaa cgtaattgaa aagactgaca tcagattttt cggctttcga 241 ggtccagaat caaacagaag aatcggagga accggagata tatttcgata tttcaaacga 301 gtgagagcga ttccacctgg agataccatg gagataccta tttcgaacat actactcctc 361 tgcctgatct tcctgttgat cggcggggtg gtgatgatcc tgctgcaata tctcatcttt 421 atcaagttct ccaatctgcc ggatgagagc gaggagcaaa agcagatgaa cgccaaatac 481 accctgccat tgaacatcaa gcaaacggcc cgaaatctga agaggttgtc caattccgga 541 atgggcggcg gcggaggagg agcaggagga gccggtaatg gatgtgagaa ccaccaggag 601 agcctacgga gagcctcggc cctggtctct ctgaacttcg tgatgcagtt cctcttccac 661 gagttcaaga actcgaaccg ggtgcggaaa tggttctacc gcaagctgtc catcgaactg 721 gacgaactga ttacaaagac taccaccgga aaacttctag acaagctcac gatcaaagag 781 cttgagctgg gggaccaatt ccccgacatc cggtcccttt cggtccacaa cgtcgagttg 841 gacaaggacg agcagcgcat cgagaacctg gatctcctgc tggacatcaa ctatgtgggc 901 aatttcacaa cttccattga cgcggacatg gtgctgggca agaagggatc cataacgttg 961 aaggtcaagc agctctcggg aatggcgcgt ctgcagttca cgcggaaacc ctacacccac 1021 tggtcaatta gcttcctcgg ggatccggag ctcatactgg acatcgagtc caagtaccag 1081 ggccgccaga tgcagtcgaa catcaccaat ctgatatcga atcagatccg gaaggcggtg 1141 cgccggaaac acacgctgcc caactacaag ctgcgctaca agcccttctt ccactggacc 1201 gcggcggatg tggatgcgga tgcggcggac tgtgacatcc agccaaacgg agtgctgcag 1261 gtcaagctgg cggagctctc ccgcttgatt gcctatccgg gggccagcga cacctactgc 1321 accatcaccc tggcgccggt gcccttcatc gaggccaatc agagggacag ccgcaatgtg 1381 ctcatctcga tggacgtgtt cattcacaag gcgaagaacc agcagatcgg catcgtcttc 1441 aagcagagcg gcagtcaggt ggtccgcata gaatcggttc taccgaatac cccagcctgc 1501 aagtccaatc tccttgccgg cgatgtcctg gtggccatcg agggcaggcc ggtgactacc 1561 attcagcaga tagccaaggt ggtcaagacg ctgcaggcca ccgtctttag tctgcgaatt 1621 gaacgcatca ttccgggcat cattcgcaac gatgccattc tggaggactt tgacaagtac 1681 gaggacctgg gggatcttcc tcaggcgaac cgaatggtgg atgcggaagc ggaagtggcc 1741 gatccgccgc tgcccaagca tctggtggtg aagcccagct tgagcggcac acccaccaac 1801 tcgcccaaga agtccaacct catagccaag gccatcaaga agaccatgag ccgagatgcc 1861 ggcgataagg ataaggacaa agataaggac aaagttacgg acaaagataa ggacaaggat 1921 aaggacaagg ataaggaaaa ggacaaagtt acggacaagg ataaggacaa agagaaagag 1981 gcagaggagc cagcggtcaa ctacttctac cagcactcga ccatcgactg cgccttcagt 2041 ccgctcatcc acatggacga cttgtgcagc ttccagctgg acaactccag tcgcttcctc 2101 aacgtctgcg tcttcggcaa gacgtccgcc ggcgagagtg tccttttggg ctaccacaat 2161 gtccagatcg gtcagatcct ggtcgagtgc tccgagacga gtctgaacca gtgcctcaag 2221 cagatcagcc tcaatccggc atcgctgcag gctgtgaaga cgcatcccct gtccaatcag 2281 tcgggcttca atccgaatct ctgctttggc gacattctgt tcggcttctc ctggctgggc 2341 aatcccaatt tgacgctggg cgagggttcc ctcaaaggtg gctccagccc caagtcccag 2401 tcgcagacgc aaactagaaa cgatcgagtg gcagtggagg atcagttcct gaaggtgacg 2461 agtaccccgg cggcggacag ctccacagct gcaggttccg gttccgattc ctcgagcgtc 2521 cagacttcgg gccttccgag ggcccatgac ttcgtgcgta cccacttcca tcgggccacg 2581 cagtgcgact tctgtggcaa gaagatctgg ctaaaggacg ccatgcagtg ccgcgagtgc 2641 tccatgtcgt gccacaagaa gtgcattgtc aagtgccaga tggccaccgt ctgtggtccg 2701 gtggactgtt ccggctccac tgcggcgatg atcagccggc cggagttcac catcacgcag 2761 gcggatccgg acaatccaga gatcctcgat ggcagcactc cgggttcgtc tgttttggac 2821 gaaactgctt cgttggcttc gtcggtggga tcgacggcag cctctggcgg ggatcagggc 2881 caatccatcc agacacccac ggcttcggct ggcctggatg tgcacagatc cagtctcacc 2941 gggatgctgg cccagggcat caagcggcag gcgagcaacc tcgatatacc cggcatcgtg 3001 tcctcgctaa cgggtggtca gcagatgaac tccaagagcc tgccacccag tcctcagcac 3061 acgccatcgc gaaaatcatc gatagtggag gaggcgccga atctgcagca gaatcccttc 3121 gagagcgtca cccagcattt ggaggccctg ccattggact gtccggaact cagcttcgag 3181 caggtgatcg tcatcaccga gcccatcgtt cggcacaccc gccacgagga tctgatgaac 3241 ctggccaaga gcaccagcaa acatttatat gttggcctgc cgcccgacga gcgagtggcc 3301 aaaataaatg agttgcttac gaaactaaag gtagccctag atgctgaaac cgagggctac 3361 acccagatga atgatgccga gagggccacg gaaatccacg gacagtcgcc ctggaaatcg 3421 gacagatcgg atgaacgggt tcaggcgctc agcatcataa tgctgtactt gtgcacgggt 3481 cttcagcatg cacagggagt ggtcctgcag tagggtatca gaaggatctg atatagagct 3541 tgaaaagtat cgacatttcg gtatattaaa aaatcgatgt ttattggaaa catcgatatt 3601 attctaaaat tttattatcg aaaatatcga tattatcgat acgatataat caaaatatcg 3661 atattgttca agctctaaga tatgtcaatg gtatcgtcgt atcgttatct taagtagtag 3721 actggaaatg tgttagtgaa ctaatgggca tttttaattc gtgttgtggc atacttacct 3781 agaagtattt caattttagc cattcgtttc aatcgaaata cgcttatttg tcagttttga 3841 aaccgatttg taaatacata acactgggat taacccaaat acaaaacatc aatggtatct 3901 atagcgttca aacttgtttt ggcgaataat aaaaaatttt taaccaaa