PREDICTED: Drosophila takahashii shawn (Shawn), transcript variant

LOCUS       XM_017139833            1433 bp    mRNA    linear   INV 09-DEC-2024
            X2, mRNA.
ACCESSION   XM_017139833
VERSION     XM_017139833.2
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XM_017139833.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1433
                     /gene="Shawn"
                     /note="shawn; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins"
                     /db_xref="GeneID:108056139"
     CDS             1..1182
                     /gene="Shawn"
                     /codon_start=1
                     /product="solute carrier family 25 protein Shawn isoform
                     X2"
                     /protein_id="XP_016995322.2"
                     /db_xref="GeneID:108056139"
                     /translation="MAKREVCAHFAAASAALAATPSQNQSKATMTDPRFRIRPLQQVA
                     SACTGAMVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNPAV
                     AKPAPRFSGTIDAFIKISRTEGVGSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDI
                     HYKYVMAGKGARDIPLAIPILVPLLAGVSARILAVTCVSPVELIRTKMQSQRMTHAEM
                     FGTIRQVVQSQGILGLWRGLPPTILRDVPFSGIYWTCYEYLKSSFGVVEPTFSFSFAA
                     GAISGSVAATITTPFDVVKTHEQIEFGEKFIFSDNPPSKQQQQAATKSVAVRLASIYR
                     LGGLPAIFSGLGPRLFKVAPACAIMISSFEYGKSFFYHYNIDQHKRSNQAVAQESEPG
                     S"
     misc_feature    115..477
                     /gene="Shawn"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
     misc_feature    532..792
                     /gene="Shawn"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
     misc_feature    799..1122
                     /gene="Shawn"
                     /note="Mitochondrial carrier protein; Region: Mito_carr;
                     pfam00153"
                     /db_xref="CDD:395101"
     polyA_site      1433
                     /gene="Shawn"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atggcgaaga gggaggtctg cgcccacttt gcggctgcca gcgcggcact ggcggcgact
       61 cccagccaga accagtcaaa ggccacgatg acggacccgc gctttcgcat acgaccgctg
      121 cagcaagtgg catccgcctg caccggcgcc atggtgaccg cctgcttcat gactccgctg
      181 gatgtgatca agacccggct gcaggcccag cagcaggcgc tgctttcgaa taagtgcttc
      241 ctctactgca atggcttaat ggatcacatc tgcccctgcg gcccggacac gcccaatccg
      301 gcagtcgcca agcccgctcc ccgcttttct ggcaccattg acgcattcat caagatcagc
      361 cgcactgagg gcgtcggctc gctgtggtct ggactcagcc ccacgctcat ctcggccctg
      421 ccctccacga tcatctactt cgtggcctac gagcagttca aggcgcgctt caccgacatc
      481 cattacaagt atgtaatggc cggcaaaggg gcgcgcgaca ttccactagc tattcccatt
      541 ttggtgccgc tgctggccgg cgtatcggcg cgcatattgg ccgtcacctg tgtcagtccc
      601 gtcgagctga tccgcaccaa gatgcagtcg cagcgcatga cgcacgccga gatgttcggc
      661 accattcgcc aggtggtcca gtcgcagggc attttgggtc tgtggcgcgg cctgccgccc
      721 accattctgc gggatgtgcc cttttcgggc atctactgga cctgctacga gtacctcaag
      781 agctccttcg gcgtggtgga gcccaccttc agctttagct ttgcggcagg agcaatttcg
      841 ggatcggtgg ccgccaccat caccacgccc ttcgatgtgg tgaaaacgca cgagcagatc
      901 gagttcggcg agaagttcat attctcagat aatccaccat ccaagcaaca gcagcaggcg
      961 gccaccaagt cggtggcggt gcggctggcc agcatttacc gcctgggcgg actgcccgcg
     1021 atcttctccg gtttggggcc gcgactcttc aaggtggcgc ccgcgtgtgc catcatgatt
     1081 tcgtcctttg agtacggcaa gtccttcttc taccactaca acatagatca gcacaagcgg
     1141 agcaaccagg cggtggccca ggaatcggaa ccgggatcct gaactcctgc tgatagctac
     1201 ggcctttgtc gacgtgaaaa cccccctgta aatgtgtaca ttaatgccaa agttgccagg
     1261 aaatcggtgg gcaggcatct cgtctgctga gtttggcgag cccgtccaaa ttgttaaatt
     1321 gtagtgaaat aaaattcttg tttttcctgg ttcaaaaaca cacaacaaac aagctgctgg
     1381 ccattcctaa ccagcttaag cggataaacg gaagcaagag gaaactggaa aca