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LOCUS XM_017139818 2226 bp mRNA linear INV 09-DEC-2024 2 (CCT2), mRNA. ACCESSION XM_017139818 VERSION XM_017139818.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139818.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2226 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2226 /gene="CCT2" /note="chaperonin containing TCP1 subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056130" CDS 140..1747 /gene="CCT2" /codon_start=1 /product="T-complex protein 1 subunit beta" /protein_id="XP_016995307.1" /db_xref="GeneID:108056130" /translation="MEMSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGP KGMDKILVATGRNAGQVEVTNDGATILRAVGVDNPAAKILVDMSRVQDEEVGDGTTSV TVLASELLREAEKLVEQKLHPQIIVSGWRQATQVALEALTAAAQDNSASDEKFRNDLL NIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGELKSIQIIKKSGGTLGDSFLDEGF LLDKKPGVHQPQRIENAKILIANTPMDTDKIKVFGSSIKVDSLAKIADLEMAEKEKMK EKVDKILKHQCNVFINRQLIYNYPEQLFADAQVMSIEHADFDGIERLAYCTGGEIVST FENPSLVKLGECDVIEQVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHD ALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAI ADNAGYDSAQLISELRAAHAQGKQTLGLDMELGKVADVRDLGITESFAVKRQVLMSAS EAAEMILRVDNIIRCAPRRRVPDRGYC" misc_feature 167..1720 /gene="CCT2" /note="TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL)...; Region: TCP1_beta; cd03336" /db_xref="CDD:239452" misc_feature order(182..184,194..196,278..289,293..295,356..358, 362..364,374..376,386..388,395..397,1277..1279,1685..1705) /gene="CCT2" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:239452" misc_feature order(263..271,428..430,440..442,632..634,1313..1315, 1367..1369,1487..1489,1616..1618,1622..1624) /gene="CCT2" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:239452" misc_feature order(1427..1429,1481..1483,1508..1510,1514..1519, 1526..1528) /gene="CCT2" /note="stacking interactions [active]" /db_xref="CDD:239452" polyA_site 2226 /gene="CCT2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttatttttac tcgaaaatat cggtaaatat ttttaacccc ccaatcccac cactatccac 61 catttttctt tgtagacttg tgcgcccgtg tggttttcga aaattctgtg atcaaaaagc 121 gactaattaa gcatcgaaaa tggagatgtc cttgaatccc gtgcgcgtgc tgaagaatga 181 ggcgcaggag gagaaggccg agatggcccg cctgtcctcg ttcattggcg ccatcgccat 241 tggggatctg gtgaagagca ccctgggccc caagggcatg gacaagatcc tggtggccac 301 cggacgcaat gccggccagg tggaggtgac caacgatgga gcgaccattc tgcgcgccgt 361 tggcgttgat aatcccgccg ccaagatcct cgtcgatatg tcccgtgtcc aggacgaaga 421 agtgggcgat ggcaccacct cggtcactgt tttggcctcg gaacttctgc gcgaggctga 481 gaagctagtc gaacagaagc tccatccgca gatcatcgtc tccggttggc gtcaggccac 541 ccaggtggcc ttggaggctc tcactgccgc cgcccaggac aactcggcca gcgacgagaa 601 gttccgcaac gatctgctga acattgcccg caccacgctc tcctcgaaga ttctccacca 661 gcacaaggac ttcttcgcca atctcgccgt ggatgctgtg atgcggctga agggctccgg 721 ggaactcaag tcgatacaga taatcaagaa gtcgggcggc actctggggg attccttcct 781 cgacgagggc ttcctgctgg acaagaagcc aggtgtccac cagccacagc gtattgagaa 841 tgccaaaatc ctgattgcca acacgcccat ggacacggac aagatcaagg tgttcggcag 901 cagcatcaag gtcgattcgc tggccaagat cgccgatttg gaaatggccg agaaggagaa 961 gatgaaggaa aaggtggaca agatcctgaa gcatcagtgc aatgtgttca tcaaccgcca 1021 gctgatctac aactatccgg agcagctgtt cgccgatgcc caggtgatgt ccatcgagca 1081 tgccgacttc gatggcatcg agcgtctggc ctactgcacc ggtggcgaga tcgtgtccac 1141 cttcgagaat ccctcgctgg tgaagctcgg cgagtgcgat gtcattgagc aggtgatgat 1201 cggcgaggac acgctgctgc gcttcagcgg cgtcaagctg ggcgaggcct gcaccattgt 1261 gattcgcggc gccacccaac agattctgga cgaggccgat cgctcgctgc acgacgctct 1321 gtgcgtgctg gccgccaccg tcaaggagtc gcgcatcatc tttggtggcg gctgctcgga 1381 ggcgctgatg gccaccgccg tgctgaagaa ggcggccgag acgcccggca aggaggccat 1441 cgccatcgag gcctttgccc gcgccctgct gtcgctgccc acggccattg ccgacaatgc 1501 tggctacgat tcggcccagc tgatctcgga gctgcgcgcc gcccatgccc agggcaaaca 1561 gactctgggt ctggacatgg agctgggcaa ggtggccgat gtgcgcgact tgggcatcac 1621 cgagtcgttc gccgtgaagc gccaggtgct gatgtccgcc tcggaggcgg ccgaaatgat 1681 tctgcgcgtg gacaacatca tccggtgcgc tccgcgccgt cgcgttcccg acaggggcta 1741 ctgctaggct gtaggcttct agcgcttaag tattcttgtt ctaggatcct atttttttta 1801 attaccaact ctcgtttaac atcatcgcta atcttatacg ttttgtttaa actaataacc 1861 aacaacccac acacattagc atttatatca cacaccaacc attacacgct atcaaatcgc 1921 acactttctc gctaaatttg tccctttcgt gtaatccttt tacctaattg tcaaacaaat 1981 tgatatgttg caagccgagc ttttgattcg atgagcggat aatgagtgcg atctgcgatc 2041 aaacgaaaac atttcaaaaa tgtctaaacc cccatcaaac caaacaaaca aagaacacaa 2101 acttgtaaat gaatacaatt gttgtaaaca tttgatgtgc gcaaattgga gaccattaaa 2161 cagcaaacaa acaacaaaaa aatggaataa atgatatata tttatgctta acaaaactaa 2221 acgaaa