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LOCUS XM_017139814 3169 bp mRNA linear INV 09-DEC-2024 sorting-associated protein 33A (car), mRNA. ACCESSION XM_017139814 VERSION XM_017139814.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139814.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3169 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3169 /gene="car" /note="vacuolar protein sorting-associated protein 33A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056127" CDS 264..2111 /gene="car" /codon_start=1 /product="vacuolar protein sorting-associated protein 33A" /protein_id="XP_016995303.1" /db_xref="GeneID:108056127" /translation="MFPHLKGHGQRVNLQLLQEAACRELVQQLERIEGSKVIVLDEAM IGPLDLVTRPKLFADRGIRLLALKPELHLPREVANVVYVVRPRVALMEQLAGHVKAGG RGAANRQYHILFAPRRSCLCISQLEAGGVLGSFGHIAELAWNYLPLDVDLVSMELPSA FRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFAHRVWEHAKQLGRDERTLY NGDKGVVDQLILLDRGIDLLSPLATQLTYEGLIDEFYGIRQNKLTLPAENFPSEGGGN VGSVSRAEESQSLLGDSEKKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMH ATSQDKSVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEF MVCADIDKPSAYIEDLIACKADLRRVLRLICLQCNAASGLKEKLLNHYKRELVHVYGL EVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEVEPKDISYVHSFYAPLTA RIVEHSLKPLGWQSLKSQINNLPGPTFEDFQAQLVGIGGRQTVGTVSEGSLLNVPRVV LVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKVVNKHSFLDSLMSS" misc_feature 369..2096 /gene="car" /note="Sec1 family; Region: Sec1; pfam00995" /db_xref="CDD:460020" polyA_site 3169 /gene="car" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accctcgata ggcagctgtt atggcgcagg cccaaatcag ctgttaccga gtgcccaccg 61 tacaatcaca atcacaggcc ccaatcatcc gcagccgaaa tccgtgggcg ttgcagcaga 121 gcagccccgc caacgcattc gccgagtcct gtgggatact aggataccag gatacagaca 181 cacaccgcag gaggagcagc aaagtcaact gaccactgac caccacctag caaagtcaag 241 gagcacggag ccaagccagt agcatgttcc cccacctgaa gggtcacggg cagcgggtca 301 acctgcagct gctgcaggag gccgcctgcc gcgagctggt gcagcagctg gagcgcatcg 361 agggcagcaa ggtgatcgtg ctggacgagg cgatgattgg gccactggac ctggtcacgc 421 ggccgaagct cttcgccgat cgcggcatcc ggctgctggc cctcaagccg gagctccatc 481 tgccgcgcga ggtggccaat gtggtgtacg tggtgcgtcc gcgcgtcgcg ctcatggagc 541 agctggccgg gcatgtgaag gccggcggac gaggcgccgc caatcgccag tatcacatcc 601 tctttgcccc gcgacgctcg tgcctgtgca tcagccagct ggaggccggc ggcgtgctgg 661 gcagcttcgg gcacatcgcc gagctggcct ggaactatct gccgctggac gtggacctcg 721 tgtcgatgga gctgcccagc gcctttcgcg acgtgagcgt cgatggcgac actagttcgc 781 tctaccaggc ggccgtgggc ctggtgcagc tgcagcggct ctacgggcgc ataccaaaga 841 tctacggcaa gggcgagttc gcccatcgcg tctgggagca cgccaagcag ctgggcaggg 901 atgagaggac gctgtacaat ggcgacaagg gcgtcgtcga tcaattgatc ctcttggacc 961 ggggcatcga tctgctcagt ccgctggcca cgcaactcac gtacgagggg cttatcgatg 1021 agttctacgg catcaggcag aacaaactaa cccttcccgc cgagaatttc ccatccgaag 1081 gaggcggaaa cgtaggcagt gtctcccggg cagaggaatc gcaatccctg ctgggcgaca 1141 gcgagaagaa aaccatcctg ctgcattccg gcgagcagct gtacgccgaa ctgcgcaaca 1201 agcacttcaa cgaggtcacc aaactgctgg cgcgaaaggc acgcgaaatc catgtccaga 1261 tgcacgccac atcgcaggac aagagcgtgc aggagatcaa gagctttgtg gagaacctgc 1321 tgccgcagct gatggcccag aagaaggcca cctcggagca cacggccatc gcagggctgc 1381 tgcacgagca ggtgaacgcc gtgcgatttg ccgacgacct ggccgccgag caggagttca 1441 tggtctgcgc ggacatcgac aagccgagcg cctacatcga ggatttgata gcctgtaagg 1501 cggatctccg tcgcgtcctg cggctcatct gcctgcagtg caacgccgcc tcggggctca 1561 aggagaagct gctcaatcac tacaagcgcg aactggtcca cgtttacggg ctggaggtgc 1621 tgctcaccat cagcaacctg gagaagtccg gcctcctgca cctgcagacg gagtcgcggg 1681 cgtacagtgt gttaagaaag acacttcacc tcaccgtgga cgacaatgtg gaggtggagc 1741 ccaaggatat cagctacgtg cacagcttct atgccccgct caccgctcgc attgtggagc 1801 actcgctgaa gccgctggga tggcagtcgc tcaagagcca gatcaacaac ttgccgggcc 1861 ccacgttcga ggactttcag gcgcagctgg tggggattgg gggacggcag actgtgggca 1921 ccgtcagcga gggatcgctg ctgaatgtgc cgcgcgtggt gctcgtctgc tttgtgggcg 1981 gttgcacctt tgccgagatc gcggcactgc gcttcctggc cgcccaggag gacaacaacg 2041 tggagttcct gatcgccacc acgaaggtgg tcaacaaaca ctccttcctg gacagcctga 2101 tgagctcgtg agggcggcgg ctcagccgat tggaggccca tcgcctgtcc aacgaccatg 2161 gattggcacg tggatgaaac gcgtcggaac cgctgaagcc gagaccaaag cgaaagggca 2221 agcggcgcag cgcggcgata aggcctgcgg attagcatcc agtttgagga tttgcctcct 2281 tgttgaggat gcgccggcac gttgaaaaac cataatatca taatatatat atgtatattt 2341 ttcgatcgcg gcatttactc ttgtattcta tgtatcgtat atgatgaagc atatatttat 2401 ttatatatat acccaaatat gtacaattat gattatagtc gtaagtgaaa aagattccaa 2461 aaccaaaagg aaggattgta gttgtaagtg aatgagcaga ataattccaa attaaattca 2521 ttcatgtttg tgcgaggaaa atattatcac aataaagtaa ttagtcaatg ttatgctata 2581 ttctctagcc agttgtaaac gttacaaagt atataatcga tatgtaaacc ggaaaaccca 2641 caagcttgat actcaactta attgtaatca agagcgaaac cattaaatat tatttaatgc 2701 aggctatgtc tatgcagaaa atgccacatt atttttgagc tttttcattg tctcacctct 2761 gcaattgaat ggttaaatag ctattgacca aatgcaatgg aaagtgacaa aaaaccgaac 2821 atatttttgg tatttgggct tttgccacaa agatatataa gataatatat ttttgctcac 2881 ttagctcgag tatcagagat gaaatctcta cagaacagca aagtcaacca gaattggtat 2941 ataaatttaa cgatttgtgt gtgaattatt ctcaaatata tattctcatc tctaatgtat 3001 gtaaatcaag aaggaatggt aactgcgtac agacgactac atttgtagtt gggtttgagg 3061 ttcgagatta aaaatgctgg aaatattttt gtcaaaagtt attcaactcg atctaaagtg 3121 taattcattg attcaaattt taaataaatg tccaacatta cagcatgaa