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LOCUS XM_017139812 3671 bp mRNA linear INV 09-DEC-2024 helicase DHX34 (LOC108056125), mRNA. ACCESSION XM_017139812 VERSION XM_017139812.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139812.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3671 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3671 /gene="LOC108056125" /note="probable ATP-dependent RNA helicase DHX34; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056125" CDS 53..3457 /gene="LOC108056125" /codon_start=1 /product="probable ATP-dependent RNA helicase DHX34" /protein_id="XP_016995301.2" /db_xref="GeneID:108056125" /translation="MSRKSGKTGAAQLAPLNLVDFSFLDRKAELAGLLQAKSRQAGRS LVENESDFWKFVGKYEAMMRSTGQPVLPPLLTEAELASTRPYHRGKHLGLRLDREELL QEATGELEAQFRHLLLVYLDFRQREKFQSIRKLRQAQRNLPIARFRGDLRQALDTSRV VIVAGDTGCGKSTQVPQFLYDFGYRSIACTQPRRLACVSLCKRVAHELLDDYGSRVAF QIRFERSRTQRTNILFITEGLLLRQLAVAANLDQYDALILDEIHERNLFGDFLLGVTK CLLRARPQLKLILMSATINVELFHGYFREEGAQLVQVPGRLFPIKLRYLPPPALELKA GQAKRSQGSNRLDPAPFVQVLSLIDQQYPTSERGDVLIFVSGVNEIESVVEAVQEYAT EQTHWLVLPLHSGQAIAEQGKVFDYAPEGWRKCIVSTNIAETSLTVDGVRFVVDSGKV KEMSYDAACKGQRLKEFWVSKSSAEQRKGRAGRTGPGVCFRLYTADQFSAFEAYPTPE IYRVPLDTMLLQMVSMGLPDVRVFPFIEAPEAERIEQTILALKQHCALSVEEKITPLG SSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLSVQNPLTNRAHTDQRCVRERESL ESDQGDLFTLVRLFREWLLLKMRREGTRQWCRRLGIEEQRFYEVTKLRQQFQRILESC GMVVATATASGSSAERATRHGELRQLKAMKRRQRFEQPRQRKLLKQSNRGQEEDEDQE DGEPGDDMRDVDFRLRFDPRQLALLERSARLDRHRDVVLLKLLLGSGFYPQLAISDEF NYCKGGGQQFFHTQLKPFVLQHPNAHFAKHYELLKLNDSDLLAKPDFYTPKHPISERH QLLCYQSLLETAKPYLINCIRLPAAQTLLLFSFAIDTNAGVTQIVCDGWLGLDLPMPG SGMELLSRAIELRRRWSRLLYAKLEDLNNKQEAPSSGVKDGSSTLWHELLDFMALDVA YAIRRLLPADIKRLYSHEAPSARLLELKENPFAGDYPMTANEEKGGLNVSEHVVYGCL AEQPWTMAMDAALRAEPWTCTRCDFELEEFDVLEQLVHRPQCKGRKVQGRRPKSDSPE PEASRSSTSHSSSSSSGSYYCDNCKRDLRLTKIDILRHQKQCRSAK" misc_feature 473..>2032 /gene="LOC108056125" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" misc_feature 2390..2725 /gene="LOC108056125" /note="Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717" /db_xref="CDD:400182" ORIGIN 1 gttatcggtg ggtgtaaata taaatataaa ttcaagcggc tccgggtgaa aaatgtcccg 61 gaaatcagga aagacggggg ctgcccagct tgccccgctc aacctggtcg acttcagctt 121 cctggaccgc aaggcggagc tggcgggcct gctgcaggcc aagagccgcc aggcgggccg 181 gagtctggtg gagaatgagt cggatttctg gaagtttgtg ggcaaatacg aggccatgat 241 gcgctccacg ggtcagccgg tgctgcctcc gctgctcacg gaggcggagc tggccagcac 301 tcggccatat caccgcggga agcacttggg cctgcgcctg gacagggagg aactgctcca 361 ggaggcaacg ggtgagctgg aggcccagtt ccggcacctc ctgctggtct accttgactt 421 ccggcagcgg gagaagttcc agagcatccg aaagctgcgc caggcgcagc gcaacctgcc 481 cattgcccgt ttccgcgggg atttgcgcca ggctttggac acatcgcgcg tggtcatcgt 541 ggcgggagat acgggctgcg gcaagtccac gcaggtgccg cagttcctct acgactttgg 601 ctaccgcagc atagcctgca cccagccacg tcgcctggcc tgcgtttccc tgtgcaagcg 661 ggtggcccac gagctcctcg acgactacgg cagccgggtg gccttccaga ttcgcttcga 721 gcgcagccgc acgcagcgca ccaacatcct gttcatcacc gagggtctgc tgctccgcca 781 gctggcagtg gccgccaatc ttgatcagta cgatgcccta atcctagatg agatccatga 841 acggaacctg tttggcgact tcctgctggg ggtgaccaaa tgcttgctgc gagcgaggcc 901 gcaactgaaa ctcatcctca tgtcggccac catcaatgtg gagctctttc acggctactt 961 tcgggaggag ggggcgcaac tggtgcaggt tccaggacga ctattcccca tcaagctgcg 1021 ctacctgccg ccaccggcgc tggaactcaa ggcgggccag gcgaagcgtt cccagggcag 1081 caaccgcctc gatccggcgc cctttgtcca ggtgctcagc ctgattgacc agcagtatcc 1141 caccagcgag cgcggcgacg tgctgatctt cgtgagcggc gtcaacgaaa tcgaatcggt 1201 tgtggaggcc gtccaggaat acgccaccga gcagacgcac tggctcgtgc tgccgctgca 1261 cagtggccag gccatcgcgg agcagggcaa ggtatttgac tatgcgcccg agggctggcg 1321 caagtgcatc gtgtctacga atatcgcaga aacctcgcta accgtggacg gtgtgcgatt 1381 tgtggtcgat tcggggaagg tcaaggagat gagctacgat gccgcctgca agggccagcg 1441 cctcaaggag ttctgggtgt ccaagtcgtc ggcggagcag cgcaaaggac gtgccgggcg 1501 cacgggacca ggtgtctgct ttcgcctcta caccgccgat cagtttagcg ccttcgaggc 1561 ctatcccacg ccggagatct accgcgtgcc actcgacacg atgctgctgc agatggtgtc 1621 catgggactg cccgacgtca gggtctttcc ttttatcgag gcgcccgagg cggagcgcat 1681 cgagcaaact atactggcgc tcaagcaaca ctgcgccctc agtgtggagg agaagatcac 1741 cccgctgggc agctcgctgg ccaacttgcc cgtggagctg tccatcggca agatgctgct 1801 catgggctgt gtctttcccg aggtggagca gctgctcact ttggccgcca tgctgagcgt 1861 gcagaatccg ctgacgaatc gcgcccacac ggatcagcgt tgtgtgcgcg agcgggagtc 1921 actggagtcg gatcagggtg atctcttcac tttggtgcgt ctcttccgcg agtggctgct 1981 gctgaaaatg aggcgcgagg gcacgcgaca gtggtgccgc cggctgggca ttgaggagca 2041 gcgcttctac gaggtgacca agctgcgcca gcagttccag cgcatcctcg agagctgcgg 2101 catggtggtg gcgacggcga cggccagcgg atccagcgcc gagcgagcca cgcggcatgg 2161 cgagctgcgg cagctgaagg cgatgaagcg gcgccagcga ttcgagcagc cgcgtcagcg 2221 taagctactc aagcagagta accgcggtca ggaggaggat gaggatcagg aggatgggga 2281 gccgggcgac gatatgcgcg acgtggattt ccggctgcgc ttcgatcccc gccagctggc 2341 tttgctggag cgttcggcgc gcctcgatcg gcaccgcgac gttgtgctgc tgaaactgct 2401 gctgggcagc ggattctacc cgcaactggc catcagcgat gagttcaact actgcaaggg 2461 cggcggccag cagttctttc acacgcaact caagcccttc gttctgcagc atccaaatgc 2521 ccactttgcc aagcactacg agctgctcaa gctgaacgac agcgatctgc tggccaagcc 2581 ggacttttac acgcccaagc atccgatcag cgaacgccac cagctgctct gctaccagtc 2641 gctgctggag accgccaagc cctatttgat caactgcatc cgactgccgg ccgcccagac 2701 gctgctgctc tttagttttg ccatcgacac gaacgccggc gtaacccaga tcgtctgcga 2761 cggctggctg ggactggatc tgcccatgcc aggcagtgga atggagcttc tcagccgcgc 2821 catcgagctg cggcgacgat ggagccgcct gctctacgcc aaactggagg atctcaataa 2881 caaacaggaa gccccttctt caggagtgaa agatggtagc agcacgctct ggcacgagct 2941 tctcgacttc atggccctag acgtggcata tgcgattcgc cggctgctgc ccgccgacat 3001 caagaggctt tactcacacg aggccccctc ggctcgtctc ctggagctga aggagaatcc 3061 ctttgccggc gactatccca tgacggccaa cgaggaaaag ggcgggctca acgtatccga 3121 gcacgtggtg tacggctgcc tggcggaaca gccctggaca atggccatgg atgcggcact 3181 ccgagcagag ccatggacat gcacacgatg cgattttgag ctggaggagt tcgatgtgct 3241 ggagcagctg gtgcatcgac cccaatgcaa gggtcgcaag gtgcagggcc gtagacccaa 3301 gtcggatagc ccagaaccgg aggcttccag aagctcaacc tcccactcct cctcctcctc 3361 ctctggcagc tattactgcg acaactgcaa aagggacttg cggctgacga agatcgacat 3421 cctgcgacat caaaagcagt gccgatctgc caagtaatat aggaaatgga ataaacatag 3481 ctatatttaa aggaacgaag accccaaatg tatctctaat ccacctatta catgttagga 3541 aatatgttca ttatggctgt atttttaatt cacttagatt taagcggttg aggagcggtt 3601 tcctaattta aaacctacaa aatgttcctg acttttcttt acaaatatct gtattttgtc 3661 atacaccaac t