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LOCUS XM_017139801 2956 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017139801 VERSION XM_017139801.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139801.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2956 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2956 /gene="exd" /note="PBX homeobox extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108056118" CDS 238..1368 /gene="exd" /codon_start=1 /product="homeobox protein extradenticle" /protein_id="XP_016995290.1" /db_xref="GeneID:108056118" /translation="MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNTGSENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLA QIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQM QLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELAR KCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPM MSPAPPQDSMGYPMGSGGYDQQQPYDNSMGGYDPNLHQDLSP" misc_feature 361..948 /gene="exd" /note="PBC domain; Region: PBC; pfam03792" /db_xref="CDD:461052" misc_feature 952..1134 /gene="exd" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(952..966,970..972,1030..1032,1048..1050,1087..1089, 1093..1098,1105..1110,1114..1122,1126..1131) /gene="exd" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(958..960,967..969,1096..1098,1105..1110,1117..1119) /gene="exd" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 2956 /gene="exd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catatcgatt tatttttctg cgtatacaga acatactttc ctttcattgt attccaaaaa 61 ataatatatt tatatacttg cggaagttta caactgcaaa aaatgtgtcg ctaaatcaga 121 gtggaccgaa tataatatat gacctgctcg gcgaatatat aaacaaaggc aatcacaata 181 aaggaaggga aaaccaaata agtatttcta tctcgggttg atattgttcg gcgagtcatg 241 gaggatccaa atcgcatgtt ggctcacacc ggtggcatga tggctcccca gggatacgga 301 ttgtctggcc aggacgatgg ccagaacact ggcagcgaga acgaggtgcg caagcagaag 361 gacatcggcg agatattgca acagataatg agcatttcgg aacaatcact ggacgaggcg 421 caggccagaa aacataccct caactgtcac cggatgaagc cggccctttt ctctgttcta 481 tgcgaaatta aggagaagac cgtcctgtcg attcgcaaca ctcaggagga ggagccccca 541 gatccgcaac tgatgagatt agacaacatg ctgattgccg agggcgtggc cgggcccgaa 601 aagggcggtg gcggagcggc ggccgcctcg gcagctgcgg ccagccaggg cggctcgctg 661 tccatcgatg gtgccgacaa tgccatcgag cattccgact accgtgccaa gctggcgcag 721 attcgtcaga tctaccacca ggagctggag aagtacgagc aggcatgcaa cgagtttacc 781 acgcatgtca tgaatcttct acgcgaacag agtcgcacga gacccattac accaaaggag 841 atcgagcgaa tggtccagat tatacacaaa aagtttagtt ccatacaaat gcagctgaag 901 cagtcgacct gcgaggccgt gatgattctc cgttcgcgtt tcctcgacgc tcgccgcaag 961 cgccgcaatt tcagcaagca ggcatccgag atcctcaacg agtacttcta cagccatttg 1021 agcaacccat atccatccga ggaggccaaa gaggagttgg cacgcaagtg cggcatcacg 1081 gtctcccaag tgtccaattg gtttggcaac aagcgcattc gctacaagaa gaacatcggc 1141 aaggcacagg aggaggccaa tttgtatgcg gccaagaagg ctgccggcgc ttcaccgtat 1201 tccatggctg gtcctccgag tgggacaacc acacccatga tgtcacccgc tccgccgcag 1261 gattcgatgg gctatccgat gggctcgggt ggctatgacc agcagcaacc gtacgacaac 1321 agcatgggcg gttacgatcc aaatctccat caggatctaa gcccctgagg atcagggctg 1381 taagtgagaa cctgctccca gttggagaat ccctcgtact acagttgcgg tcaaaataac 1441 tgcattgaaa aaatcaatca atcgatcatg cagtttcttc tttctaatta tgtaagttct 1501 ctttttcgta acgaggcgcg cggttttttc gtttttgctg tattaattct gctgtcacac 1561 agataagttt aaaaaaaatt cccataaatt tagatatagt gaatagaata acaatacgta 1621 atagctagtt tgtgcttgct agattttggt tcgtggaaaa caggagctca tataaaagaa 1681 aacaatatta taatcagttg cgagaggtag acagaaatct ctttaggcaa aattcagttg 1741 aaattctgtg gcaagagatt tctgttttcc tctcgctcct gataattgta tattgttttc 1801 tataaatgaa agaattttag caggataatc ctgtagtaaa atatcaagaa agcttaaaaa 1861 atcaaatcat acatatatgc ttcctttcat atttgattca aatgcaaatg caaatgcatg 1921 tttgtaaagt aaatacgtaa taattggttt aagcaattat attttataac ataacaattc 1981 gtaaagggaa aataatcaat gcagagactt tagcttatat ccattaacca ttgagaagaa 2041 cgtattcaag gaaactcaat taaaaactcg tggtatacga atagtttcac taggaacggg 2101 gaggcacaac atttcagggc tcttattttg accgcagctg tgtataaata tattttaata 2161 ctaattaatt tacctacatt tgcgggtata tacaaaaata ttgcatgtgt aaatcatact 2221 atgacggttc tttttggcta cagtacgtat acgacgacag caaaatagtg tttactaaat 2281 ttaaatctgt acgaaatacg aaatttttaa ctacgaacaa tacgaaaata cgaaactaaa 2341 ccatgtatac gatgtatatc aaataaataa ataatacatg ttgttgttat ccgcacacgt 2401 caaaactaaa tacaaaaaat atttcaaatg taaaaacggt gaagattttg aaaaaattta 2461 atgtctcatt tccatcgaaa gacgaattgt ttctgcatta ctaaggtttt gaaattaaat 2521 taaaggaaaa cacatgatta tgtatgtgtt tttttttttg caataaataa agtattatat 2581 attaactatt gcttttaaaa caacttttta attttaattg cattggctaa aaataattgt 2641 attatttttg ataattttat tttcgaagaa aaactcgtct ttcgctttga atgaaatatg 2701 ctgaattctt ttgcctcaat taaaacggat attaaaacag attatttaaa tgaatacaaa 2761 aacgattatt atttttactg ataaataata tatgtcttct tcgcccgtct ttcgctcaca 2821 taaaacggtc aaatgaaacc attcaatgta tttcagtatg ataaggtatt gcattaaaaa 2881 ttttggataa caatagaaaa atatataaat acacaacttt acacgaataa cataataaat 2941 ataaaaacca agtata