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LOCUS XM_017139773 3238 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017139773 VERSION XM_017139773.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139773.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3238 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3238 /gene="CoRest" /note="REST corepressor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056100" CDS 374..2143 /gene="CoRest" /codon_start=1 /product="REST corepressor isoform X2" /protein_id="XP_016995262.2" /db_xref="GeneID:108056100" /translation="MVLAERNTTDVVRNGRRSRGPSPNTHTPGGGGVANNANSLVGGG GGGGGNSGNPNANEKNASTAVPGAGTPESSDDDNSTKRNGKSKAKQSEYEEKIRVGRD YQAVCPPLVPEVERRPEQMNERALLVWSPTKEIPDLKLEEYISVAKEKYGYNGEQALG MLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIA SLVKYYYSWKKTRHRSSAMDRQEKTIKAVVKDGSENGSEVGSNEESDNDDKIQKNRQM MEQLDKECDAINVEDAASTKPTAAAAANSASEPAQPRISARWSPDEIQVALCAIREYG KNYPIIAKLVTTKTEAHVRTFFVNNRRRYNLDQLVKEYEAVKSEESGPEEQNNEPAAT DATAAAATATAAASATANAAVDSATAASVASTETSNNSGGVVEASQESLAKKEEHKKP EPAAAAGEATDATVPTTVASTSSSTASAPSNKSSSGTITITDESDTATNSSSDVVAPG AVATGSATTAAASTASSALPASQAKSQGSEEPASGAVASGTPPPAAVANPPSKRDSSV MAIAEQPPAKKIALSGGVEFLGK" misc_feature 662..820 /gene="CoRest" /note="ELM2 domain; Region: ELM2; pfam01448" /db_xref="CDD:460214" misc_feature 926..1060 /gene="CoRest" /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is...; Region: SANT; cl21498" /db_xref="CDD:473887" misc_feature order(929..931,1016..1021,1025..1030,1034..1042, 1046..1054) /gene="CoRest" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:212559" misc_feature 1322..1453 /gene="CoRest" /note="Myb-like DNA-binding domain; Region: Myb_DNA-binding; pfam00249" /db_xref="CDD:459731" polyA_site 3238 /gene="CoRest" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttgagtgta tccattgcaa ccgtggctgc tacagccaca gtttaaatta actttgagca 61 ttcgctcgat tttcagccgt atcctgtcgt caaactccgc gagtgtgcat ttaaagggcc 121 caagaagccg cttcgttttc gatctcgaat tgcggggcaa ctggcgatac ctggagggcc 181 gtgcgacgag aacgccaggc gagggcaaaa aaatcggatc aaccgacaga caaagctgaa 241 ctgcggtcgt cgccgacaaa gtgcgctgtg cacacacgga cggccataga gagaatcgtg 301 ctcgacaagt gtttggtgaa cagctagcac cctggagaag caaaacaagc gcgcccagct 361 catccgggac aagatggtgt tggcggagcg caacaccacg gacgtggtgc ggaacggtcg 421 tcggtcgcgc ggtcccagtc ccaataccca cacgcccggc ggcggtgggg tggccaacaa 481 tgccaacagc ctcgtgggcg gtggcggagg aggcggcggg aactccggga acccgaatgc 541 caacgagaag aacgcctcca cagccgtgcc gggcgcaggg acgccggaga gctcggacga 601 cgacaactcc accaagcgca atgggaaaag caaggccaag cagtcggagt acgaagagaa 661 aatccgcgtg ggtcgcgact accaggctgt gtgcccgcct ttggttccgg aggtggagcg 721 gaggcccgaa cagatgaacg aacgcgcact cctcgtctgg tcgcccacca aggagattcc 781 cgatctgaaa ttggaggagt acatctcggt ggccaaggag aagtacggct acaacggcga 841 acaggctctg ggcatgctct tctggcacaa gcacgacctg gaacgggccg tcatggatct 901 ggccaacttc acgcccttcc cggacgagtg gaccatcgag gataaggtgc tgttcgagca 961 ggccttccag tttcacggga agagcttcca ccgcatccgc cagatgctgc cggacaaatc 1021 aatagccagt ttggtcaagt attactactc gtggaagaag acgcgccatc gcagcagcgc 1081 catggatcgc caggagaaga ccatcaaggc ggtggtcaag gatggctccg agaacggcag 1141 cgaggtgggc agcaatgagg agtctgataa cgatgacaag atccagaaga ataggcagat 1201 gatggagcag ctggacaagg agtgcgatgc gatcaacgtc gaggatgcgg cctccaccaa 1261 gccaacggcg gcggcggcgg ccaacagcgc atccgaaccc gctcagccac gcatctccgc 1321 ccgctggtcg ccggacgaga ttcaggtggc cctgtgcgcg atacgcgagt acggcaaaaa 1381 ctatcctatc attgccaagc tggtgaccac caagacggag gcgcatgtgc gcaccttttt 1441 tgtgaacaat cggcgtcgct acaatctgga ccagctggtc aaggagtacg aggctgtcaa 1501 gtctgaggag tcgggccccg aggagcagaa caacgagcca gcagccaccg atgcaacagc 1561 agcagcagcg actgcaacag cggctgcatc cgcaacagca aacgcagctg tggattccgc 1621 aaccgcagcg agcgtagcat ccacagaaac cagcaacaac agcggaggag tggtcgaagc 1681 tagccaggaa tcgctggcca agaaggagga gcacaagaag cccgaacctg ctgctgctgc 1741 cggcgaagca acggatgcca cggtgcccac cacggtggcc tccacctcct ccagcacagc 1801 ctctgctccg agcaacaagt ccagcagtgg tacaatcacc atcaccgatg agtccgacac 1861 ggccaccaat tcgagcagcg atgtggtggc cccgggagcg gtggctactg gaagcgccac 1921 cactgctgct gcgtccactg ccagctctgc tctgcccgca tcccaagcca agtcgcaggg 1981 cagcgaagag ccagcgagtg gtgccgttgc ctcgggaact cctccgccgg cagccgttgc 2041 taatcccccc agcaagcggg atagctccgt gatggccatt gccgagcagc cgccggccaa 2101 gaaaatcgcg ctaagcggcg gtgtcgagtt cctgggcaag tgaggagacc cccgataaat 2161 atataccggt atataggata gcttcaagga gacgacagac aggctggggg tactcacgtc 2221 caagggtggt gcagcctgct caccggattc cttatccgtt ctcttctttt ttttttgaat 2281 tgtctttaaa tcttgggacg catttattat gtgaaaagca tcaagcatca cggcttaaac 2341 taggctttta gaaattagtt tctattttcg gggtaacatt tagaggatac cctgaattga 2401 ggattgtaca tgcataaaca cgcacgtaat ctttgactct gaagcaggcg aagaagtcgt 2461 acccagaaat ttgattgagc atagataaat tcagtactta ttatttcggt tgaataatag 2521 tcgtctatga aaacagatct tggaaccata taaattactt ataactacac ctgggtacgg 2581 ccctggtaaa tgggggaaga atctttcaca acatttgtat aggtcagaga tgatttttaa 2641 tgggtttaac gggtaagagg gcactctcct aagcttcgta ggccacacaa aactaacgag 2701 tagtgcacac acaacagaaa acattagatt cgcgggagag ttagtgctga ttatgtatgt 2761 aacattatga taatgagttt atacacatgt aaattattaa cttaactgtc gtacgttttt 2821 ttttgtcgtg aataatttag catacagcca ggtccttggg acaggcgtac ccattatata 2881 caatctggag aatcacccat ccatccggcc tcaattcagc cacttcagca acgagtttct 2941 gttaggctaa atataatgta actaaaaaca cagttggcaa ctggcaacaa ttgtatacaa 3001 ccagcgctat tcgtttaaga acaaaaaaat cattaaatat gtacaagtaa tacgacaaaa 3061 tattcggtca tcttactaaa aatcctagga tcctaagaat ctgccgattt cgaattccct 3121 gtccccttct tcttagtaaa agtggtctga acaagaagtt agcacatctc ggattcggaa 3181 cagtcggtgt ccaatgaatt gttaatatta caaataaata taaatataat tcacaaaa