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LOCUS XM_017139770 3927 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017139770 VERSION XM_017139770.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139770.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3927 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3927 /gene="CoRest" /note="REST corepressor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056100" CDS 376..2832 /gene="CoRest" /codon_start=1 /product="REST corepressor isoform X1" /protein_id="XP_016995259.2" /db_xref="GeneID:108056100" /translation="MVLAERNTTDVVRNGRRSRGPSPNTHTPGGGGVANNANSLVGGG GGGGGNSGNPNANEKNASTAVPGAGTPESSDDDNSTKRNGKSKAKQSEYEEKIRVGRD YQAVCPPLVPEVERRPEQMNERALLVWSPTKEIPDLKLEEYISVAKEKYGYNGEQALG MLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIA SLVKYYYSWKKTRHRSSAMDRQEKTIKAVVKDGSENGSEVGSNEESDNDDKKGQHGSN SNNNATDNTTNSTTNNTTNSPANTNATSNSNNNHTNSNNVGNNQNNNNGDENNQGGGG SNNSSNNTSHNDLDTDQLSLLAGGAGNADEVLGFGLSADGATPNGSNNNNNGEIGDLR RVVVGGFCKICNVVCHVLHDSPLGRMCKSCHTHWRRTGNRRPISGPESNAPRRSTHNC AATADRSKRKPPKGMYINHDDLTALASCKNPSVYLAERDRKITALMAEIQKNRQMMEQ LDKECDAINVEDAASTKPTAAAAANSASEPAQPRISARWSPDEIQVALCAIREYGKNY PIIAKLVTTKTEAHVRTFFVNNRRRYNLDQLVKEYEAVKSEESGPEEQNNEPAATDAT AAAATATAAASATANAAVDSATAASVASTETSNNSGGVVEASQESLAKKEEHKKPEPA AAAGEATDATVPTTVASTSSSTASAPSNKSSSGTITITDESDTATNSSSDVVAPGAVA TGSATTAAASTASSALPASQAKSQGSEEPASGAVASGTPPPAAVANPPSKRDSSVMAI AEQPPAKKIALSGGVEFLGK" misc_feature 664..822 /gene="CoRest" /note="ELM2 domain; Region: ELM2; pfam01448" /db_xref="CDD:460214" misc_feature 928..1062 /gene="CoRest" /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is...; Region: SANT; cl21498" /db_xref="CDD:473887" misc_feature order(931..933,1018..1023,1027..1032,1036..1044, 1048..1056) /gene="CoRest" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:212559" misc_feature 2011..2142 /gene="CoRest" /note="Myb-like DNA-binding domain; Region: Myb_DNA-binding; pfam00249" /db_xref="CDD:459731" polyA_site 3927 /gene="CoRest" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtttgagtg tatccattgc aaccgtggct gctacagcca cagtttaaat taactttgag 61 cattcgctcg attttcagcc gtatcctgtc gtcaaactcc gcgagtgtgc atttaaaggg 121 cccaagaagc cgcttcgttt tcgatctcga attgcggggc aactggcgat acctggaggg 181 ccgtgcgacg agaacgccag gcgagggcaa aaaaatcgga tcaaccgaca gacaaagctg 241 aactgcggtc gtcgccgaca aagtgcgctg tgcacacacg gacggccata gagagaatcg 301 tgctcgacaa gtgtttggtg aacagctagc accctggaga agcaaaacaa gcgcgcccag 361 ctcatccggg acaagatggt gttggcggag cgcaacacca cggacgtggt gcggaacggt 421 cgtcggtcgc gcggtcccag tcccaatacc cacacgcccg gcggcggtgg ggtggccaac 481 aatgccaaca gcctcgtggg cggtggcgga ggaggcggcg ggaactccgg gaacccgaat 541 gccaacgaga agaacgcctc cacagccgtg ccgggcgcag ggacgccgga gagctcggac 601 gacgacaact ccaccaagcg caatgggaaa agcaaggcca agcagtcgga gtacgaagag 661 aaaatccgcg tgggtcgcga ctaccaggct gtgtgcccgc ctttggttcc ggaggtggag 721 cggaggcccg aacagatgaa cgaacgcgca ctcctcgtct ggtcgcccac caaggagatt 781 cccgatctga aattggagga gtacatctcg gtggccaagg agaagtacgg ctacaacggc 841 gaacaggctc tgggcatgct cttctggcac aagcacgacc tggaacgggc cgtcatggat 901 ctggccaact tcacgccctt cccggacgag tggaccatcg aggataaggt gctgttcgag 961 caggccttcc agtttcacgg gaagagcttc caccgcatcc gccagatgct gccggacaaa 1021 tcaatagcca gtttggtcaa gtattactac tcgtggaaga agacgcgcca tcgcagcagc 1081 gccatggatc gccaggagaa gaccatcaag gcggtggtca aggatggctc cgagaacggc 1141 agcgaggtgg gcagcaatga ggagtctgat aacgatgaca agaaggggca acatggcagc 1201 aatagcaaca acaatgcaac cgacaacacc acaaactcga caaccaacaa caccacaaat 1261 tcccccgcaa acaccaatgc caccagcaac agcaacaaca atcacaccaa cagcaacaac 1321 gtgggcaaca accagaacaa caacaacggg gatgagaaca accaaggcgg cggcggaagc 1381 aacaacagca gcaacaacac gagccacaac gatctggaca ccgatcagtt gtccctcctc 1441 gcaggaggag caggaaacgc cgacgaggtg ctgggatttg gcctttctgc cgatggtgcc 1501 acccccaatg ggagcaacaa caacaacaat ggcgaaattg gagatctgcg tcgcgtggtt 1561 gtgggcggtt tttgcaagat ttgcaacgtg gtctgccacg tgctgcacga ttcaccgctg 1621 ggtcggatgt gcaagagttg tcacacccac tggaggcgca cgggcaaccg gcgacccatt 1681 tccgggccgg agagcaatgc tccccgaaga tccacccaca attgcgccgc cacggccgat 1741 cggtccaagc gcaagccgcc caaggggatg tacatcaacc atgacgacct gacggccctc 1801 gcgagctgca agaatcccag tgtctacttg gcggaacgcg atcgcaagat cacagccctg 1861 atggccgaaa tccagaagaa taggcagatg atggagcagc tggacaagga gtgcgatgcg 1921 atcaacgtcg aggatgcggc ctccaccaag ccaacggcgg cggcggcggc caacagcgca 1981 tccgaacccg ctcagccacg catctccgcc cgctggtcgc cggacgagat tcaggtggcc 2041 ctgtgcgcga tacgcgagta cggcaaaaac tatcctatca ttgccaagct ggtgaccacc 2101 aagacggagg cgcatgtgcg cacctttttt gtgaacaatc ggcgtcgcta caatctggac 2161 cagctggtca aggagtacga ggctgtcaag tctgaggagt cgggccccga ggagcagaac 2221 aacgagccag cagccaccga tgcaacagca gcagcagcga ctgcaacagc ggctgcatcc 2281 gcaacagcaa acgcagctgt ggattccgca accgcagcga gcgtagcatc cacagaaacc 2341 agcaacaaca gcggaggagt ggtcgaagct agccaggaat cgctggccaa gaaggaggag 2401 cacaagaagc ccgaacctgc tgctgctgcc ggcgaagcaa cggatgccac ggtgcccacc 2461 acggtggcct ccacctcctc cagcacagcc tctgctccga gcaacaagtc cagcagtggt 2521 acaatcacca tcaccgatga gtccgacacg gccaccaatt cgagcagcga tgtggtggcc 2581 ccgggagcgg tggctactgg aagcgccacc actgctgctg cgtccactgc cagctctgct 2641 ctgcccgcat cccaagccaa gtcgcagggc agcgaagagc cagcgagtgg tgccgttgcc 2701 tcgggaactc ctccgccggc agccgttgct aatcccccca gcaagcggga tagctccgtg 2761 atggccattg ccgagcagcc gccggccaag aaaatcgcgc taagcggcgg tgtcgagttc 2821 ctgggcaagt gaggagaccc ccgataaata tataccggta tataggatag cttcaaggag 2881 acgacagaca ggctgggggt actcacgtcc aagggtggtg cagcctgctc accggattcc 2941 ttatccgttc tcttcttttt tttttgaatt gtctttaaat cttgggacgc atttattatg 3001 tgaaaagcat caagcatcac ggcttaaact aggcttttag aaattagttt ctattttcgg 3061 ggtaacattt agaggatacc ctgaattgag gattgtacat gcataaacac gcacgtaatc 3121 tttgactctg aagcaggcga agaagtcgta cccagaaatt tgattgagca tagataaatt 3181 cagtacttat tatttcggtt gaataatagt cgtctatgaa aacagatctt ggaaccatat 3241 aaattactta taactacacc tgggtacggc cctggtaaat gggggaagaa tctttcacaa 3301 catttgtata ggtcagagat gatttttaat gggtttaacg ggtaagaggg cactctccta 3361 agcttcgtag gccacacaaa actaacgagt agtgcacaca caacagaaaa cattagattc 3421 gcgggagagt tagtgctgat tatgtatgta acattatgat aatgagttta tacacatgta 3481 aattattaac ttaactgtcg tacgtttttt tttgtcgtga ataatttagc atacagccag 3541 gtccttggga caggcgtacc cattatatac aatctggaga atcacccatc catccggcct 3601 caattcagcc acttcagcaa cgagtttctg ttaggctaaa tataatgtaa ctaaaaacac 3661 agttggcaac tggcaacaat tgtatacaac cagcgctatt cgtttaagaa caaaaaaatc 3721 attaaatatg tacaagtaat acgacaaaat attcggtcat cttactaaaa atcctaggat 3781 cctaagaatc tgccgatttc gaattccctg tccccttctt cttagtaaaa gtggtctgaa 3841 caagaagtta gcacatctcg gattcggaac agtcggtgtc caatgaattg ttaatattac 3901 aaataaatat aaatataatt cacaaaa