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LOCUS XM_017139755 3544 bp mRNA linear INV 09-DEC-2024 (vap), transcript variant X3, mRNA. ACCESSION XM_017139755 VERSION XM_017139755.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139755.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3544 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3544 /gene="vap" /note="RAS p21 protein activator vap; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108056092" CDS 219..3083 /gene="vap" /codon_start=1 /product="ras GTPase-activating protein 1" /protein_id="XP_016995244.1" /db_xref="GeneID:108056092" /translation="MADLIHLGNIDVVIQKDKPGSPTGCSDDGNLAGLGGMSGLGGMM AAGGIDLGDLAQELDHDEFDGPHMLNGERPAIIAPPESEWYHGRLDRYSAESRLRGSS KLGSYLVRESDRKPGSYVLSYYGRTGINHFRITAVCGDFYIGGRQFISLSDLVGYYTS CSDLLKRERLAIPVAPPEPVNDKKRVVAILPYTKMPETDELSFQKGDIFFVHNDMGDG WLWVTAHRTGEQGMIFRELVDDLDVSIDPNTVFPWFHPNCTKNEAVDMLVKAGPGSFL VRPSDNSPGDYSLFFHINNQIQRFRIEKKGVRYLMGGRTFECLDAVINRYRKEQIVEG HSLNHPVVNGIQPEFNQQYVVEKAAEKIYATLRECRDQIGLKKIKGIKHHGHLNKKSD KTTKWKQLYFALINDGSETQLCFYDNPKKTKPKGLIDLSCAYLYQCHDSLWERPYCFQ IVERALPCLATVTYLCAPSQESYVEWINSLKAQCDSQLSRAQKKVSRLRELRCLNLHV LEAHRLPFKLVPHPYCSISLNQVKVGKTRVKIAPEPVWEEEFVLDDVPPDVVSLTITL ISRGKRGKDSEVAELTIDLSSLKNGQETEGWYQLTGMTPMGEWGSLRLRMRYLDDLIM PCEEYSPLQQLLLESELYAVKALAELCHNDRVPLATALLRVFRQEKRETELIRMLCQA EVTRENETTTLFRGASLATTLMDLYMRTECSGFLQSAVSETVQRILESKQSAELNPTK MDVNDDACTNAEFLLQILDLVTQSIFTSPDACPRNVRFICSCLQKAVMAKWPTERLVR TRVVSGFIFLRLLCPALLNPRQFGLVSETPPMAATRSLVMVAKCLQNLANLIEFGGKE QYMEVVNPFILKNKERMIVFLDQLSSVNDPNQPLGMFVEQSTNLNSQDTGRELATLHH ICVSHSQELHELSNILSIKKLVTVTDMLTKHKLKYREMIS" misc_feature 408..716 /gene="vap" /note="N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Nterm_RasGAP; cd10353" /db_xref="CDD:198216" misc_feature order(489..491,546..548,609..611,615..617) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature order(612..614,690..692) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature 765..941 /gene="vap" /note="Src Homology 3 domain of Ras GTPase-Activating Protein 1; Region: SH3_RasGAP; cd11788" /db_xref="CDD:212722" misc_feature 972..1196 /gene="vap" /note="C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Cterm_RasGAP; cd10354" /db_xref="CDD:198217" misc_feature order(996..998,1050..1052,1113..1115,1119..1121) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature order(1116..1118,1194..1196) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature 1353..1670 /gene="vap" /note="RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; Region: PH_RASA1; cd13260" /db_xref="CDD:270080" misc_feature 1713..2084 /gene="vap" /note="C2 domain present in RAS p21 protein activator 1 (RasA1); Region: C2_Ras_p21A1; cd08400" /db_xref="CDD:176045" misc_feature 2076..3080 /gene="vap" /note="Ras GTPase Activating Domain; Region: RasGAP; cl02569" /db_xref="CDD:470620" misc_feature order(2181..2183,2289..2291,2295..2297,2301..2306, 2310..2312,2319..2321,2331..2333,2616..2618,2640..2645, 2652..2657,2664..2666,2727..2729,2736..2741,2748..2750, 2760..2762,2766..2768,2781..2786) /gene="vap" /note="RAS interface [polypeptide binding]; other site" /db_xref="CDD:213340" polyA_site 3544 /gene="vap" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttccgcgcat cactagcaat tgaattctat cgggttgtgg ctatcgctta gcacataatc 61 atcacggaaa actgagtaca atcaccaaag cttccgtttt tcctaagtaa acgcaaagac 121 atcgttgcta tatgtggctt ttatcaaagg gaatttcgct gaaagttaaa tatagattaa 181 gattcccatt cactgagcag agatcataaa ggaagatcat ggcggaccta attcacttgg 241 gaaacataga tgttgtcatc cagaaagata agcccggctc gccgacgggc tgctcggatg 301 atggaaacct ggcaggtctg ggcggcatga gtggattggg cgggatgatg gccgccggtg 361 gcattgatct gggtgacttg gcgcaggaat tggatcacga tgaattcgat ggaccacaca 421 tgctaaatgg tgaacgtcca gcgattattg ctcctcccga aagtgaatgg taccacggac 481 gacttgatcg ttactcagct gaatcacgtc tgcggggcag cagtaaactg ggaagctact 541 tagttcgtga aagtgaccgc aagcctggct cctatgttct aagttattat gggcgtaccg 601 gcataaacca ttttcggatc acggctgtgt gcggagactt ctatatcggt ggacgacaat 661 tcatatcgtt gagcgatctg gttggctact atacctcatg cagtgaccta ctgaagcgcg 721 aacgattggc cataccagtg gctccgccgg agccagttaa tgataagaag cgagtcgttg 781 ccatcctgcc ttatacaaaa atgccagaga ccgatgagct gagcttccag aaaggtgata 841 ttttcttcgt gcacaatgac atgggcgacg gttggctgtg ggtcactgcc catcgtactg 901 gcgagcaggg aatgattttc cgagagcttg tggatgatct ggatgtatcc atcgatccga 961 ataccgtctt tccgtggttt catccgaatt gcaccaaaaa cgaagctgtc gatatgttgg 1021 ttaaagctgg acccggcagc ttcttggttc gccccagcga caactcaccg ggcgattact 1081 ccctcttttt ccatattaac aaccagatcc aacgatttcg catcgagaag aagggcgtgc 1141 gatatttgat gggtgggcgg acatttgaat gcctcgatgc ggtgattaat cgttaccgca 1201 aggagcaaat tgtcgagggc cattcgctca atcatccggt tgtcaatggc atacagccag 1261 agttcaatca gcaatatgtt gtggaaaagg ctgcggaaaa gatatatgcc acactgcgcg 1321 agtgccgtga ccaaatcggt ctgaagaaga tcaagggaat caaacatcat gggcatttga 1381 acaagaaatc ggacaaaacg acgaaatgga agcaactata tttcgctcta atcaacgatg 1441 gctccgagac gcaactttgc ttctacgaca atccgaagaa gaccaagccg aagggtctga 1501 tcgatttgtc atgtgcttac ctctatcaat gtcacgattc cctctgggag cgtccctatt 1561 gctttcaaat tgtggaaagg gctctgccct gtttggccac tgtgacatat ctgtgtgctc 1621 ctagtcagga aagctacgtg gagtggatca attcgctgaa ggcccaatgc gactcccagc 1681 taagtcgggc ccagaagaag gtctcacggc tacgcgagct tcggtgtctc aatctgcatg 1741 tgctagaagc tcatcgctta ccatttaaat tagtgccaca tccatactgc agtatttcac 1801 tcaatcaagt caaagtgggt aaaacacgtg tcaaaattgc acccgaaccg gtttgggagg 1861 aggaatttgt actggatgac gttcccccag atgttgtctc cctaaccatt acgttaatat 1921 cgcgcggtaa acgcggcaaa gattcggaag tggccgagct aacgatcgat ttgtctagtc 1981 tgaagaatgg ccaagagact gagggctggt accagctcac cggaatgacg ccgatgggcg 2041 aatggggctc gctgcgtctg cgtatgcgtt acctcgacga tctgataatg ccctgcgagg 2101 agtacagtcc actgcagcaa ttgctactcg aatcggagct gtatgcggtg aaggcgctgg 2161 cggagctctg tcacaacgat cgagtgccat tggcgacggc tctgttgcga gtctttcggc 2221 aggagaagcg cgagacggag ctaattcgaa tgctgtgcca ggcggaggtg acacgcgaaa 2281 acgagacgac gacacttttc cggggcgcct ccttggccac cacactaatg gatttgtata 2341 tgcgaaccga atgcagtgga ttcttgcagt cggcggtcag cgaaaccgtt cagcgcattt 2401 tggagagcaa gcagtcggcg gaattaaatc caacgaaaat ggacgtcaac gatgatgcct 2461 gcacgaatgc cgagtttctg ctgcaaatcc tcgatctggt cacccagtcg atatttactt 2521 caccggacgc ctgtccccgg aatgtgcgct tcatttgcag ctgcctgcag aaggctgtga 2581 tggccaagtg gccgacagag cggctggttc gcacccgagt cgtctccggg ttcatattct 2641 tgcgcctcct atgcccagcc ctgctgaatc ctcgacaatt tggcctggtc agcgagacgc 2701 ctccgatggc ggccactcgt tctttggtca tggtcgccaa gtgtcttcaa aatttggcca 2761 acttgattga gtttggcggc aaggaacaat acatggaggt tgtcaatccg tttattttga 2821 aaaacaagga acgcatgatt gtcttcttgg atcaactgtc ctccgtcaac gatccgaatc 2881 aaccgcttgg aatgtttgtc gaacaaagta caaatctgaa ttcacaagac actgggcgcg 2941 agctggctac cttacatcac atctgtgtat cgcattcgca agagcttcac gagctatcca 3001 acatactttc aattaagaag ctggtcacag taacggacat gttgaccaag cataaactga 3061 agtaccgcga gatgatcagc taaaataaag ataataaacg cgatgtcttc ttatctacac 3121 aagtcccttc ataccttttt ataacaaata tttatatgtg tatactatta gaatacatga 3181 taacaataag aactcataat aactggttga attgtattgg aatagtaaac agaagaatat 3241 catttataaa aattatttat acgaaatgaa atattatatt taactgacag gtatatgcat 3301 ttatttatta ttaaaaatta cttatataat acactagctt acacggagta ctctccgtat 3361 agccgcaaaa aactcagaaa ttatacatgg ttttgctttt gatattgtgt tttaaattta 3421 cagaaacaga aaccactttt atccaaaatc catacatttt tttcgagaca aataacgcat 3481 aaaatcgaaa taaattaatg aatttataaa aaaaagagtg caaaagactt cctctgaaaa 3541 aata