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LOCUS XM_017139727 5658 bp mRNA linear INV 09-DEC-2024 domains 1 (Gapvd1), transcript variant X1, mRNA. ACCESSION XM_017139727 VERSION XM_017139727.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139727.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5658 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5658 /gene="Gapvd1" /note="GTPase activating protein and VPS9 domains 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056079" CDS 136..5178 /gene="Gapvd1" /codon_start=1 /product="receptor-mediated endocytosis protein 6 homolog" /protein_id="XP_016995216.2" /db_xref="GeneID:108056079" /translation="MEPPAAGNLLEIMDLARTLRQEQLFIQQEQAAFAQLTGALETNA GTITKLAFVCAQQRQILNELLLARTDHDPLLSCRRASAYDSAQFMDAKQLLPYEHALA YEDLFNYLYNTPYLLALSLATADRLSLLSASQLGQIINTIATGLYGNAINTKDVELLL KLLRELIEIQLLTSEQPRRLLRSNSSSFARLYQRLVESLFSARIFLTAALHAPLMGVL SEHEIWLDLDPHKLMQTFGQKEREKRFGREEDGEEYQRNVARFHAETLGKLHSHVQVF VRSLQQSWALFPSSLRWLLQTLSQQLRQTLRHEEQEIRQLLTDLVFTHFISPAIASAD LLGIIDVNVSERMRHNLNQIVRLLQRLALNDEDSELVQLMDLLMLGQTGEDVVAILPQ QSDFERSQLAINQRELAQLVEFFRLLSGREEYDISVEERQRLQRILGRIPKPNVTPSE ARESRESQSPEKSNAKKSNKSLMSLSKATKKLAKGMSFSSNNHHPVVAAAASVAVPPP ELQNGGDLLEQCSSSHSGSNTSLSSCGVVDPLDPVLVFSLYNAGAKSKLKPLTEEEVL KMNCIGQDGSNLLPAVVTTAPMAPSSNNDDVSSLEAMRRPQDDASIGNSDNLEAISEA AHSVASSLDLEEQQERDVHENEDNLSDMVSANVSGRGTPNISGRDTPSSQVTDGDGAG GDLVHHHGVNSRAAANPQMQKMLLSKARSDIEDKFCKFELKKFEGDENVSIISDTWST DVLASDSENTLDATERGDRNFSTPLIPSAVVLPGDNNFVVEALARAGRGAPAHPQLDA SDQRSESNWSTDVLASDSEKLAEIDTDDNVSITTKSDTAAASQAAVLDDGDEDEQTPG SSGDGDPDPDPHGNVSERSQEDSAFFDAVNSYEDANLYQGASSLARSSVRTSYHVLGG EGSFQQQYKCSGASDSSGRKTTPLMGTSCMRRQTSAESSISNQSLNLEEEHHHHHHHN HNHHREHHREREHHHHHRERSALKKKKHNQEKEKEKEHRDLIDFSDCSEDKEELARRI RLEDAEQPPGLVQQLLDMFNQDEQAAIAGVPSTNVEHRRISIEQRSAIVDGRRNGILA GSMRRHQSLNYENHEIMLNSTLNMLAKTDDDKQQEMLLCAQTQQLQLEPPVVPGGAAG GANAPTKATGAIPKSISFDASADKEKQPYHRDRERDRERERDRDRERERERDRDRDRD RDRDHHGAGLFNKLKMTNIFKNRRGGGSAKNSNSNPSVAPADLRSVSFDPSAGCDNFG THYCDTSEDILAKYRRKVSSSSEATNSDSTAGNGGAAGAAAAASSSSSHLHKHMNGGQ IPGVAFGSVKQKLRTVLSRTDLHSGDFRQTSSTSSTMATPLQIYLQIQLAQCISLQRL PQISHVAEALRCLAQLERPQHGQLLAELQRDLERRQSYLQYLMRHRQQLLLRTEQLDQ LEARLRGEARSSQRCLLQALVRMYLAWSRQQEKLEQFQTEFAQLRASDERVELTEECV ESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIG KLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSL LRMSSGRVPAADDLLPVLIYVVIMANPPFLLSTVEYISCFLGKKLEGEDEFYWTLFGS VVKFIKTMDYLD" misc_feature 403..1455 /gene="Gapvd1" /note="Ras-GTPase Activating Domain of Rab5-activating protein 6; Region: RasGAP_RAP6; cd05129" /db_xref="CDD:213331" misc_feature order(550..552,667..669,673..675,679..684,700..702, 709..711,721..723,1078..1080,1102..1107,1114..1119, 1126..1128,1189..1191,1198..1203,1210..1212,1222..1224, 1228..1230,1240..1245) /gene="Gapvd1" /note="putative Rab5 interface [polypeptide binding]; other site" /db_xref="CDD:213331" misc_feature <1849..2772 /gene="Gapvd1" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 4273..>4659 /gene="Gapvd1" /note="Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Region: YhaN; COG4717" /db_xref="CDD:443752" misc_feature 4864..5166 /gene="Gapvd1" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" polyA_site 5658 /gene="Gapvd1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attgtttttg ttgtttcctt tttgagacgc gtgtgtgtgt tttggccgtg ataatttatt 61 tattttcccg ttccgtttgt ttatgcacta tcatttaagt taggtttttg gcacaggcgc 121 aggaccagct gcaccatgga gcccccagct gctggcaatc tgctggagat catggacctg 181 gcccgcaccc ttcgccagga gcagctcttc atccagcagg agcaagcggc ctttgcccaa 241 ctcactgggg ccttggaaac gaatgcgggg accataacca agttggcctt tgtgtgcgcc 301 cagcaacggc agatcctgaa cgagctgctc ctggcgcgca cggaccacga tccgctgctc 361 tcgtgccgcc gggcgagtgc ctacgacagt gcccagttca tggacgccaa gcagctgctg 421 ccctacgagc acgctttggc ctacgaggat ctgttcaact acctgtacaa cacgccctat 481 ctgctggccc tttcgttggc caccgcggat cgcctctcgc tgctttcggc cagtcaactg 541 ggccagataa tcaacaccat tgccacgggt ctctatggca atgccatcaa caccaaggac 601 gttgaattgc tgctcaaatt gctgcgcgaa ctgatagaaa tccaactgct aaccagcgag 661 cagccgcgtc gtttgctaag atccaatagc agctcctttg cgcgactcta tcagcggctg 721 gtggagagcc tattctccgc cagaatcttc ctaaccgccg ctttgcatgc tccactcatg 781 ggcgtgctga gtgagcacga gatttggctg gatctcgatc cgcacaagct gatgcagacc 841 tttgggcaga aggagcggga gaagcgcttc ggacgggagg aagacggtga ggagtaccag 901 cgaaatgtgg cgagatttca cgcggagacg ctggggaaac tgcactcgca tgtccaggtt 961 tttgtgcgca gtctgcagca gagttgggcc ctgtttccct cttcccttcg ctggcttttg 1021 cagactttga gtcagcagct ccgccagact ttgcgccacg aggagcagga aatccgccag 1081 ctgctcaccg atctcgtgtt cacccacttc atttcaccgg ccattgcaag cgccgatttg 1141 ctgggaatca tcgatgtaaa tgtcagcgaa cgaatgcgtc acaatctcaa tcagattgtg 1201 cgactgctgc agcgactggc gctgaacgac gaggacagcg aactggtgca gctgatggat 1261 ctgctgatgt tgggccaaac gggcgaggat gtggtggcca tactgccgca gcagagcgac 1321 tttgagcgct cccagctggc catcaatcag cgggaactgg cccagctggt ggagttcttt 1381 cgcctgctca gcggccgcga ggagtacgat atatccgtgg aggagcgaca gcggctgcag 1441 aggattctcg ggaggatacc caagcccaat gtgacgccgt cggaagcaag ggaatcgcgg 1501 gaatcgcaga gtcccgagaa gagcaacgcc aagaaaagca acaagagtct gatgagcctg 1561 agcaaggcca ccaaaaagct ggccaagggc atgagtttca gtagcaacaa tcatcatcct 1621 gttgtagcgg ctgccgcttc agttgctgtt cccccgccag agctccagaa tggcggcgat 1681 cttctcgagc agtgctcctc ctcgcacagc ggcagcaaca cgagtttgag ttcctgcggc 1741 gtcgtcgatc ccctggatcc cgtgctcgtt ttcagcctct acaatgccgg cgccaagagc 1801 aaactgaagc cgctgaccga ggaggaggtg ctcaagatga actgcatcgg tcaggatggc 1861 agtaatctcc tgcctgccgt ggttacaacc gcaccaatgg ctccctcgtc gaacaatgat 1921 gatgtgagta gtttggaggc gatgagaaga ccgcaggatg atgcttccat cgggaattca 1981 gataatttgg aggccatcag tgaggcggcc cattcggtgg ccagttcgct ggatttggag 2041 gagcagcagg agcgggatgt ccatgagaac gaggacaatc tatccgatat ggtgtcggcg 2101 aatgtttcgg gccgtggaac accgaatatc agtggccgcg atacgccatc ctcccaggta 2161 accgatggcg atggcgctgg cggggatcta gtccaccatc atggcgtcaa ttcgcgggcg 2221 gcggccaatc cgcaaatgca aaagatgctg ctctcgaagg cgcgatccga tattgaggat 2281 aaattctgca aattcgagct gaagaagttc gagggcgatg agaatgtgag cattatttcg 2341 gacacctggt cgacggatgt cctggcctcg gattcggaga acacgctgga tgccacggag 2401 cggggggata gaaacttctc tactccctta ataccctccg ctgttgttct tcccggcgat 2461 aataactttg tggtggaggc tttggccaga gcgggaagag gagcaccagc gcatccccag 2521 ttggatgcct cggatcagcg atcggagagc aactggagca ccgatgtgct ggccagcgat 2581 tcggagaagc tggccgaaat cgatacggat gataatgttt ccataacaac caaatcggat 2641 acggcggcgg cttcgcaggc agctgtttta gatgacggcg atgaggatga gcagacgccg 2701 ggcagcagtg gcgatgggga tcccgatcct gatccccatg gcaacgtcag cgagcgcagc 2761 caagaggatt cggccttttt cgatgcggtc aactcgtacg aggatgcgaa tctctatcag 2821 ggagcctcct ctttggcccg cagttcggtg aggaccagct accatgtgct gggcggcgag 2881 ggaagcttcc agcagcagta caaatgcagc ggagccagcg attccagcgg gcgcaagacc 2941 actccgctga tgggcacctc ttgcatgcga cgccaaacgt cggcggagag cagcattagc 3001 aatcagagct tgaatctgga ggaggagcat catcatcatc atcatcacaa tcacaatcac 3061 catagggagc accacaggga gcgggagcat catcatcatc acagggagag atcggctctg 3121 aaaaagaaga aacacaatca ggagaaggaa aaggagaaag agcatcggga tctcatcgat 3181 ttcagcgact gcagcgagga caaggaggag ctggccagga ggatacgctt agaggatgcc 3241 gagcagccac ctggcctggt tcagcagctc ctcgatatgt tcaaccagga tgaacaggca 3301 gccatcgcag gagttccctc cactaatgta gaacaccgac gcatctctat cgagcagcga 3361 tcggccatcg tggatggacg acgcaacggc atcctggcgg gcagcatgcg tcgccatcag 3421 agcctcaact acgagaatca cgagataatg ctcaactcca cactcaacat gctagccaaa 3481 accgatgatg acaagcagca ggagatgctg ctctgtgcgc agacgcagca gctgcagctg 3541 gaacccccag ttgttccagg aggagcagct ggaggagcta atgcacccac caaggccacc 3601 ggcgccatac caaagagcat tagtttcgat gcgagcgcgg acaaggagaa gcagccgtat 3661 catcgcgaca gggaaaggga tcgcgaaagg gagagggatc gggatagaga aagagaaagg 3721 gagagagatc gtgatcgaga tagagatcga gatcgtgatc accatggagc tgggctgttc 3781 aacaagctga agatgaccaa catattcaag aatcgccggg gaggcggtag tgccaagaat 3841 tccaattcca atccctcggt ggccccagcg gatttacgca gcgtgagctt cgatcccagc 3901 gccggctgcg ataacttcgg cacccactac tgtgatacga gcgaggacat cctggccaag 3961 taccgccgca aggtgagcag ctccagcgag gccaccaact cggattccac ggcgggcaac 4021 ggaggagcag caggagcagc ggcagccgcc tcctcctcct cctcgcatct gcacaagcac 4081 atgaatggag ggcaaattcc tggcgtggcc ttcggcagcg tcaagcagaa gctgcgcacg 4141 gtgctctcgc gcacggatct gcacagcggc gacttccggc agaccagctc cacctcctcc 4201 acgatggcca caccgctgca gatctacctg cagatccagc tggcgcagtg catcagcctg 4261 cagcgattgc ctcagatctc gcacgtggcc gaggcgctgc gctgcttggc ccagctggag 4321 cggccgcagc atggccagct gctggccgag ctgcagcggg atctggagcg caggcagagc 4381 tacctgcagt acctgatgcg ccatcgccag cagctgctgc tgcgcaccga gcaactcgat 4441 cagctggagg cccgattgcg cggcgaggcg cgcagcagtc agagatgcct gctgcaggcc 4501 ctcgttcgga tgtatctcgc ctggtcgcga cagcaggaaa agctcgagca gttccaaacc 4561 gaattcgctc agttgcgagc cagcgatgag cgggtcgaac tgaccgagga atgcgtggag 4621 tcgctgctgc aggagctgcg ctccagtgcc gatctgcagg acgagtggca ggtggacgcc 4681 gcccgggtgg ccatcgagcg aatgctgctc gagcagatgt acgagcaggt gatgttcccc 4741 aacgaggatg ccgatgtgtc gcgcgacgag gtgctctccg cgcacattgg caagctgcag 4801 cgcttcgtgc atcccgccca tccggcgctg tgcatcgccc aggagtattt gggcgaggcg 4861 ccgtggacct tcgcccagca gcagctgtgc cacatggccg cctacaagac gccgcgcgag 4921 aagctacagt gcatcatcaa ctgcatctcg agcatcatga gcctgctgcg catgtccagt 4981 ggtcgcgtgc ccgctgcgga tgatctgctg cccgtgctca tatacgtggt gataatggcc 5041 aatccaccct tcctgctgtc caccgtggag tacatcagct gcttcctggg caagaagctc 5101 gagggcgagg acgagttcta ttggacgctc ttcggatccg tggtgaagtt catcaagacc 5161 atggactatc tggattagct cctctatctg tagatctttt ttagcgcttt atctccactc 5221 cactcgatat tttctatatt tatatatatg tatatctgtg tctgatatct gatatttgtg 5281 taaaaatttg ttaaaaccct aggctaagtc gaaaactgcg gcagatgaga cataatccaa 5341 gtcaatgcga ccccaggaaa gagaaaatca atgtgaaatg tgagatgtga gatgccaacg 5401 ctgaagaaga tgaagatatc tagatttagg ttagcattga acgctagaag aaggcctcgc 5461 cttatgggtt atccatgata tatgatatat atagtgagct agagaacata ttcttctatt 5521 tatatataca cgtacataga tatatgcatg tttatcggat cggtctaggc actgtcataa 5581 gtatgtttcg gaaacgaaca gcaacttaat attccttatt gtgtaacaca aaaaataaaa 5641 aaccaatata atttcaaa