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LOCUS XM_017139716 2384 bp mRNA linear INV 09-DEC-2024 (LOC108056077), mRNA. ACCESSION XM_017139716 VERSION XM_017139716.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139716.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2384 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2384 /gene="LOC108056077" /note="gamma-butyrobetaine dioxygenase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056077" CDS 380..1606 /gene="LOC108056077" /codon_start=1 /product="gamma-butyrobetaine dioxygenase" /protein_id="XP_016995205.2" /db_xref="GeneID:108056077" /translation="MWVPRLLRTIKQHTQFTRQISARIVNGTNIEVQPEDGKPEKLIF PSVWLRDNCLCDECFHGSSKSRKLDWDNFDTRIKPVDLVADGKEKQVVVRWSDHHESR FTLEWLKDRSFQKEKQEEYLREFYRPETQHWSGKQFQDIARHFNYEEVMSQDSTLMQW LQSLAVHGVALLRNAPLDEGVVRRLAERVGFIRRTTYGEEFVVQAKPGAQNFAYLSLP LPLHTDLPYYEYKPSVNILHCVVQTDSPGGSNMLVDGFHIADILRRDYPEDFERLSRV IVDWNDIGSEDGRKFHNIWRAPVICLDAEGRYTRVNHSVPQRDSHFNVPLAEVLPWYE SYARFVRLAIADSHAFKTQPGDVLTFNNIRLLHGRTGYDDSEISPRYIVGAYLDWDII YSRLRVLKNKIQRKPQ" misc_feature <509..703 /gene="LOC108056077" /note="Gamma-butyrobetaine hydroxylase-like, N-terminal; Region: GBBH-like_N; pfam06155" /db_xref="CDD:461840" misc_feature 743..1549 /gene="LOC108056077" /note="Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cd00250" /db_xref="CDD:238154" misc_feature order(950..955,1052..1054,1058..1060,1073..1075, 1226..1228,1529..1531,1535..1537) /gene="LOC108056077" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238154" misc_feature order(1043..1045,1049..1051,1127..1129,1478..1480, 1517..1519) /gene="LOC108056077" /note="active site" /db_xref="CDD:238154" misc_feature order(1043..1045,1049..1051,1478..1480) /gene="LOC108056077" /note="iron coordination sites [ion binding]; other site" /db_xref="CDD:238154" polyA_site 2384 /gene="LOC108056077" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcggagga gcatggaaga tagggcactc ggaccccaaa agctggatca gaacttgtgc 61 tttattacct tggcagtagt agtgggcgtg gcaggaacaa ccacaaagcc cacgaccaca 121 acatgacgag gatgtgtatg tggatacact gagcgaaatt ctgaatactc accatggctt 181 tgctggaaaa tttacatatc ccacgcctct gtcccctgtt tgaatgagct ggcagccaaa 241 gtccaaagac ccgatttagc cgctgattat gatgatgatg ctcgctttct ccggcgcctc 301 attcggcact caatgctcaa gtcgatcggt gggctacgct actctataag aaatattaaa 361 atattccaaa taaataagca tgtgggtgcc gagattactg aggaccatca aacagcatac 421 ccaatttacc cgccaaatca gtgcgaggat cgtgaatgga acgaatatcg aagttcagcc 481 ggaagatgga aagccggaaa agctgatttt tccttcagtt tggctgcgtg acaattgttt 541 gtgcgacgag tgcttccacg gcagctccaa gtcccgcaag ttggactggg acaacttcga 601 taccaggata aagccagtgg atttggtggc tgacgggaag gaaaagcagg tggtggtgcg 661 gtggagtgac caccatgaga gtcggttcac cctagagtgg ctcaaagatc gcagtttcca 721 gaaggaaaaa caggaggagt atttaaggga gttctaccga ccggaaacgc agcactggtc 781 gggcaagcag ttccaggata tcgccaggca cttcaactac gaggaggtga tgtcccagga 841 ctccacgctg atgcagtggc tccaatcgct ggccgtccat ggggtggccc tcctccggaa 901 tgctcccctg gatgaggggg tggtgcgtcg cctggccgag cgggtgggct tcattcgacg 961 caccacctac ggcgaggagt tcgtggttca ggccaagccg ggtgcccaga actttgccta 1021 cctctcgctt cccctgcccc tgcacaccga tctgccctac tacgagtaca agccgagtgt 1081 gaatatcctg cactgcgtcg tccagacgga ttcacccggc ggcagcaaca tgctcgtcga 1141 cggcttccac attgccgata tcctgagacg cgactatccc gaggacttcg agaggttgag 1201 tcgcgtgatc gtcgattgga acgacattgg cagcgaggac ggaaggaagt tccacaacat 1261 ctggcgggcg ccggtcatat gcctggacgc cgaggggcgg tacacgcggg tgaaccacag 1321 cgttccgcag cgggacagcc acttcaacgt gccgctggcg gaggtgctgc cctggtacga 1381 gtcctacgcc cgcttcgtcc gcctggcgat cgccgacagc cacgccttca aaacgcagcc 1441 cggcgacgtc ctcaccttca acaacatccg acttttgcat ggaagaaccg gctacgatga 1501 ttcggaaatc agtcctcgct acattgtggg cgcctatctc gactgggaca tcatctattc 1561 gcgtttgcgg gtgctgaaga ataaaataca aagaaaaccc caataaaaag aaaagcgagc 1621 tgccatattt tccaagccat ttgatgtgag cttcttattt gaatagttgc ccccgcacat 1681 atgctacgaa atctggaaat ccatctaatc ccgtttagct tcaggcgcca atttcggcag 1741 ctaaagcagt taaagcagct caagcgcaaa aatgaaaagt tgaaaaaaat cacgatgatc 1801 ccgggatcca aagaaaaagt caccaagttc tgggggaaat tatgggcggg ggtgtctcgg 1861 cttatttgca tcgcggcatc gcctgacaaa tcgtttgtga aaatgattga cagcgggggg 1921 agttgggggc ataaaggggc gggaaattgg ccaaaacacg ttgggagtgt cgaaaatgtg 1981 gccaagttga gaacctcaca ctgcgacaaa tttcgattgc atacaagatc atttttaaat 2041 ttcattaatt tgtgtaataa aaaataaaat ataaatggct tatttaaatg tctgcctgta 2101 ttatataata aatcaacgat catttctacg ttttttactg cctattaacc ataaattgta 2161 atttttgaaa tcccaatata aataaaatat aaatttctta tttttcctat ttatattttt 2221 agttgtatta tgaataataa cattttttac aatacgaagc atttattaaa atgtaatgaa 2281 tattgtaata aaagtaactt aactttaata tgtgtaatac aaaatagaat ataaaattct 2341 tacataatta aatatgaaaa atataacatt ttttacaata caaa