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LOCUS XM_017139715 4017 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017139715 VERSION XM_017139715.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139715.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4017 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4017 /gene="NetB" /note="Netrin-B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108056076" CDS 758..3199 /gene="NetB" /codon_start=1 /product="netrin-B" /protein_id="XP_016995204.2" /db_xref="GeneID:108056076" /translation="MVRMGRLLSCLPVILALAIVQLGLGSHSSAAGISSNDPCYFEGK PRKCLPSFVNAAYGNPVQASSTCGSQQPERYCELLRDGSIGECRKCEAQRYGPSSLTD LNNPSNVTCWRSGGVNVPHDPSNAPPDNVTLTLSLGKKYELTYISLSFCPKSPRPDSL AIFKSSDFGLSWQPFQFYSSQCTKFYGRPDRAKISKFNELEARCINSQHDSGGGGGAS QRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKKNNANSFSD EMGGSREEEDDGEEDLELEGDDQDEYSDYNLQDNDSGDNANYDEYEEPKKHLELDDDH LGHLDYASDGEQSSISSLNTKLSRERQQGKHKYEKHYQSKSTTQQPKVTPSGSTVAPG GGGATTSPSSVILPISQHYAVSDFAVGGRCKCNGHASECVATVGSGLGSGSGSSSDTD DGQDEDSPANAAPAHFGRSIQTTAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATD NDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRD ATKPPNHRKVCKRCDCHPVGSTGKTCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSHV APCIKVPTNANMIQAESAGGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKASPKKLNLN KFCMEDYAILAKVIGHDRASQDISTEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSS LLGRGNMMLLVPRKSIECQCPKIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEWKDEW SLRMKRFQRRARKCS" misc_feature 881..1549 /gene="NetB" /note="Laminin N-terminal domain (domain VI); Region: LamNT; smart00136" /db_xref="CDD:214532" misc_feature <2186..2266 /gene="NetB" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature 2306..2479 /gene="NetB" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature order(2306..2308,2312..2314,2333..2335,2387..2389, 2396..2398,2423..2425) /gene="NetB" /note="EGF-like motif [active]" /db_xref="CDD:238012" misc_feature 2492..2638 /gene="NetB" /note="Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in...; Region: EGF_Lam; cd00055" /db_xref="CDD:238012" misc_feature order(2495..2497,2501..2503,2531..2533,2552..2554, 2558..2560,2585..2587) /gene="NetB" /note="EGF-like motif [active]" /db_xref="CDD:238012" misc_feature 2798..3190 /gene="NetB" /note="NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration...; Region: NTR_netrin-1_like; cd03579" /db_xref="CDD:239634" polyA_site 4017 /gene="NetB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agttgttcga atcagtttgc caggtgaaca acattgagcg cgctagcgag cgatttcgag 61 gcgattccga ggcgatttcg aggcggtcga agtcgaattt aaccgaagtg cgcgtcgggc 121 cttcgttcct atttttttct ttgtgcttct gtgcgagtga gagagagaga gagcaagagc 181 gaaagagaga gagagagcgc gacaaggaag gagcagcagc ctccgcgaca aggagttgaa 241 tatatcacag tgtgttagga cgagagaatc atcaaacgat tcggaacgca gcgaaacgat 301 tcggaacgaa gcgaccgatt cgaaacagaa cacaggacct tttttggggg caattggcgc 361 gaggacgtcg ccgtggcgaa cagaaacacg ctggccgttg accgagtggc aacgtagccc 421 ggagaatcgg tttggagaat tggttcttga gcgaagaaga gagtgtatcg tatcgtatcg 481 tatcgtatcg catcgcaagt gaggaactcc taaaactgag actgaactga gcatttcgca 541 gctgttgcat gctgttgtgg cagactcagt gacgccgcga gtgccgtcgc caccgcgtct 601 ttggtttttg ttgtttgttg tttgtttggt gaccccgacg cgatcctctc gagtgtgcag 661 tgtgacccag acagccaaat actaagcaca tttaaaacag tgaaacggaa agagacacac 721 gagtcccgtc gggaacgagg tattcgcatt cgagccaatg gtcaggatgg gccgactgct 781 gagctgcctg cctgtgatcc tggcactggc catcgtccaa ctgggactgg gatcccactc 841 ctcggccgcc ggcatatcct ccaacgatcc ctgctacttc gagggcaagc cgcggaaatg 901 cctgcccagc tttgtgaacg ccgcctatgg gaatcccgtc caggcatcga gcacctgcgg 961 atcccagcag ccggagcgat attgtgagct cctccgcgac ggttccatag gcgagtgccg 1021 gaagtgcgag gcccagcgtt atggaccctc gtccctcacc gacctgaaca atccgagcaa 1081 cgtgacctgc tggcgctccg gcggggtcaa tgtgccccac gatcccagca atgcgccgcc 1141 cgacaatgtc accttgaccc tgtcgctggg caagaagtac gagctgacct acatatcgct 1201 gagcttctgc cccaagtcgc cgcgtcccga ttcgctggcc atcttcaaga gctccgactt 1261 tggcctcagc tggcagccct tccagttcta cagttcccag tgcaccaagt tctatggtcg 1321 ccccgataga gccaaaatct ccaagttcaa tgagttggaa gccaggtgta ttaactccca 1381 acatgatagt ggtggaggtg gaggagcctc ccagagattt gccttcaaca ctttggaagg 1441 acgaccctcg gcgaatgact tggactcatc gctcgtcctg caggattggg tgacggccac 1501 ggatattcga gtggtctttc atagactgga gctgccgccg cagctgctga aggtcaagaa 1561 gaacaatgcc aattcgttta gcgatgaaat gggcggaagt cgcgaggagg aggacgatgg 1621 cgaggaggat ctcgagctgg agggcgatga tcaggacgag tacagtgact acaatctgca 1681 ggacaacgat agtggggata atgccaacta cgatgagtac gaggagccca agaagcactt 1741 agagctggac gatgatcatc tggggcattt ggactatgcc agcgatgggg aacagtcatc 1801 tatatcatca ttgaatacca agctaagcag ggaaagacag cagggcaagc acaagtacga 1861 gaagcactat cagagcaaaa gtaccaccca gcagcccaag gtcactccga gtgggagtac 1921 agttgccccc ggaggaggag gagctaccac ctcgccctcc tcggtgattt tgcccatttc 1981 gcagcactat gccgtctccg atttcgccgt cggcggtcgc tgcaagtgca atggccatgc 2041 ctccgagtgt gtggccactg tgggttccgg tttgggatca ggatcaggat catcatcgga 2101 taccgatgac gggcaggacg aggactctcc cgcaaacgcc gcccccgccc actttggacg 2161 gagtatccag acgacagcca aactgaccat gacctgcgcc tgcaaacaca ataccgccgg 2221 tcccgagtgc gagcgctgca agcccttcta cttcgaccgc ccctggggca gggccaccga 2281 caacgatgcc aacgagtgca agatgtgcca gtgcaatgga cacgcccgtc gctgccgctt 2341 caacctggag ctatacaagc tatcgggtcg ggtttcgggt ggtgtgtgct acaactgcca 2401 gcacgatact acggggagat actgtcacta ctgccgcgag ggatattacc gggatgccac 2461 taagccgcca aatcatcgca aagtctgcaa gcgttgcgac tgccatccgg tgggttcgac 2521 gggcaagacg tgcaatcacc taagtggcca gtgtccctgc aaggagggcg tcaccggact 2581 gacctgcaac cgatgtgccc gaggctacca gcagacccgc tcccacgtgg caccctgcat 2641 caaagtgccc accaatgcga acatgattca ggccgagagt gctggcggcg gcggcggagg 2701 aggcggcacg ggtgattata aggacggcgg tggttcgcag gtcgaggaaa tgaagaagta 2761 ctgcggcaag tgcaaggcga gtcccaagaa gctgaatctc aacaagtttt gcatggaaga 2821 ctatgccatt ttggccaagg tcattggcca cgatcgcgcc tcgcaggaca tcagcaccga 2881 aaagttctcg atagagcgac agaacgagat ctacaagtac gagatcaaca tccagacgat 2941 cttcaagcgg aatcccatgt cgggcacgac cagttccttg ctgggcagag gcaatatgat 3001 gctgctggtg ccgcgcaaga gcatcgagtg ccagtgtccc aaaataaagc taaacaaatc 3061 gtatctcatc cttggacgcg actcggaggc ggcgcctggc tatttggcca taggacccag 3121 ctcggtggtc ctcgagtgga aggacgagtg gtcgctacgc atgaagcgat tccagcggcg 3181 agcacgcaaa tgcagttgaa tcgaaccgga aacggaatat gtcagagcgg atttcaattt 3241 cacacacttg gctaggtatc ggtttttgta taaattgtac agtttactca agtttctgac 3301 cttcttcggc atcatgctat aaattaatct aaacgaatcg aatcggaaaa tcggtccctt 3361 aaaatcaaaa gtccccagcc cgtcgtcagc aattcccaac cggaagtaat acctatataa 3421 cctataatct cagttccctc ctagaatatc atcttcttct tccggtggaa ggggagtttc 3481 tagtctataa agcgctttac acaaaacaca caaaatacac aacccctaca tattatgccc 3541 ctttttatga aacaccaaat gctaattaca gttacgtgcc aatgggccaa tgggcagtgg 3601 gcgtggccgt ggccgcttgt gtccataacg gttatgttgg ccataaaaaa cagttataaa 3661 ttgaaaataa gtgcgagaaa gagccgaaaa gcgtcgcgtg tcgcgattct agacaaccaa 3721 acaggcaaac aagcgcgaat tttccgggag ggaaatggaa aatgggaaat ggggaaaacg 3781 gacaaacagg ccaacacgtc gacacataag tgcagtcata aagcaacaac aaaacacggg 3841 ccttgaccag atggcaagcc gtccacatcc acacttttgc caataaatag tagggagcct 3901 caaaatagta ttattaatag tcaatagaat agaaggtaga atatcccgta ccaatcaaat 3961 ttctaggcat tttaacgaat gaaaaattct cttaaaaaac aaattaatta tttgaat