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LOCUS XM_017139713 4926 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_017139713 VERSION XM_017139713.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139713.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4926 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4926 /gene="wisp" /note="wispy; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056073" CDS 578..4531 /gene="wisp" /codon_start=1 /product="poly(A) RNA polymerase gld-2 homolog B" /protein_id="XP_016995202.2" /db_xref="GeneID:108056073" /translation="MFTTRITGEMKIFAADVAESSATAACNTPVQQQQQQLEFRSRMS NGSPGSKAGQCHLKFGKYNNKTANLLRQVNSCHSSNSGNNNSSSSNLSSSNSEANKGQ QQQQPLHYCNNSHSWARKKYFGNVSSSSSSSNNLQQQQQQQQSAYYQRQQQQQQQHQI QQQQDQQSLNNNNVLMKNQNSIQPLMPDCKSSDSNNNCSSSSNRMSAKPAKWLSDSNN SSSSNINTISTKKRNSSAAEVNAGYYRKVSESGNSVEAAAEMRETDAAAATATDACHN RSPSTAETTGRETSLAKTQDPEQDQTNQAKQRPRQQPLSFWKTNYPQPTASQLKDKET VAAVVSAAAAAASEQQQQQQQSLSFEHRRNSGYQQQHQQHNNYYQYYYSQPKQLTIAS FLQKELLPDSSGEKASSNSNSNSSSSNSNLISSNSNYSRQQYGHQSVGSGYQQRYRNA QSVYQQYQQQHHQAQQQHSHQQFRRKHGDNSNSSSNHGSGINQKKMHYSPTGKNGDPV ERSSRDPGQQQQQHHHLHHQQKTIEILASSNFNAMHRRMQGGNNNKNGYYQHNNYHPL AGESGTTPTRSEHQNIYNLTYVHVDMEASSSGAGGDATPVVKPSISITPAASSSAAAT TPTTVVAPPLPPPHPRNMFGPPPPPLVMQLHVSPVSTPTPTKMISCAQLDEAITSAAA TASGDQNLATSPGYNQAAAAGSFITIPPQQQQSSHPQPPPPPPPLPQMFHFHFAEGFC NPVAPPGPPHPPVWPHSGSPCYQVPAGTSPHNKDVSAAVGLRPVSPALSSSSLGSESH WSSRLSHGGHGSHGSHGSHLSISPTPSAQLSPHPLQLANHHGHPHGQMNGHAMSSYLP HRPPPPPHPHAAISSPTPGATGSAPWYELLLPPDRYLAQARNVEVAVQPEKLICMCKY DSLSAEIWKRFRAAQQTHKKFKVKMRLWRYLFLWMNQPMFERYRICLVGSTITGFGTD SSDIDMCLLPEQGAHPHQQQQQHYHQQHHHFHNEKRTEALIILTLFNAVLKDTEVFQD FNLIEARVPILRFKDVTNGIEVDLNFNNCVGIKNTYLLQLYAQLDWRTRPLVVIVKLW AQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHTLYPEKFQLGQQDCLDLD LIEPIEPYQALNNQTLGEHLLGFFKYYSTFDFRNYAISIRTGGVLPVATCRMAKSPKN DVYQWKELNIEEPFDLSNTARSVYDYATFERVKGVFLASARRLDHTLDLATVFRPIRP PETFSQQQQQQLPYPNPGQQRSAGGGGGGGAAPMSSKLIPDAATTFAEATAANVA" misc_feature 3374..3793 /gene="wisp" /note="Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Region: NT_PAP_TUTase; cd05402" /db_xref="CDD:143392" misc_feature order(3461..3469,3497..3502,3506..3508,3686..3691, 3695..3697,3701..3703,3734..3736,3755..3760,3767..3772) /gene="wisp" /note="active site" /db_xref="CDD:143392" misc_feature order(3461..3463,3686..3688,3695..3697,3701..3703, 3734..3736,3755..3760) /gene="wisp" /note="putative primer-binding pocket [active]" /db_xref="CDD:143392" misc_feature <3464..>4243 /gene="wisp" /note="DNA polymerase sigma [Replication, recombination and repair]; Region: TRF4; COG5260" /db_xref="CDD:227585" misc_feature order(3500..3502,3506..3508,3734..3736) /gene="wisp" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143392" polyA_site 4926 /gene="wisp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tacccgaata ttacggtagt tgctagctga tttcagagcg tttcaggcgc acttttagtt 61 tattttttat gaatgttaga attgatgtgg aaagtgtgtg ttgggctgga atatttttga 121 aaaacggagc agtgcaagga acgctcaaca agatataagc accgtttttg ttctttcttc 181 ccgtttccgt ttttggttcc gggaaaattg caacgccccc gcattttgag catattgccg 241 ggctcttttc ccctttttat tttgcccaca ttgcgttgca atttcggggc tcttcgcata 301 taacggtcct ttttcaccgc ctctttcaca cacaagaacg ggggaaagaa agaagagaga 361 gagagagacc gcgaaataat atacgtgtgg aactacggta cttttacact ggtggccgta 421 aaaagtgaaa gtcagcctaa atatttaaaa atcctgaaat gaaataaagt gttaataaag 481 aattagtaaa gcctaaagca ctaagcagcg attcgtgccg agcaattttt tatacccaaa 541 actcgagcca cgatagcccc ccaaataaac aaactctatg ttcaccaccc gaataaccgg 601 cgaaatgaag atctttgccg ccgatgttgc cgagagcagc gcaacagcgg catgcaacac 661 gcccgtgcag cagcagcagc agcaactcga gttccgttcg cgaatgtcca acggatcgcc 721 cggttccaaa gcgggacaat gtcatctgaa gttcggcaag tacaacaaca agacggccaa 781 tctgctgcgc caggtaaaca gttgtcacag cagcaacagc ggcaacaaca acagcagcag 841 cagcaacctt agcagcagca acagcgaggc caataagggc cagcaacagc aacagccact 901 gcactattgc aacaacagtc actcgtgggc acgcaaaaaa tactttggca acgtcagcag 961 cagcagcagc agcagcaaca acttgcaaca gcagcaacaa cagcagcaat ctgcgtacta 1021 ccagcgacag cagcagcagc agcagcaaca ccagattcag cagcaacagg atcagcaatc 1081 tttaaacaac aacaatgtgc tgatgaagaa tcaaaatagc atacaaccgc tgatgccaga 1141 ttgcaagtcc agcgacagca acaacaactg cagcagcagc agcaacagaa tgtcggcaaa 1201 gccagccaag tggctaagcg acagcaacaa cagcagcagc agcaacatca acaccattag 1261 tactaagaag cgcaactcat cggcggcaga ggtaaatgca ggatactatc gcaaggtttc 1321 ggaatctgga aactctgtgg aagctgcggc cgagatgagg gaaacggatg cagctgcagc 1381 aacagcaaca gatgcctgcc acaacagaag tccttcgaca gcagagacca ctggtaggga 1441 aacctccttg gctaagaccc aggatccgga acaggatcag acaaatcagg cgaaacagcg 1501 acccaggcag caacctctca gcttctggaa aaccaattac ccgcagccaa ccgccagcca 1561 gctgaaagat aaggagacgg ttgcagcagt tgtatcagcc gccgcagccg ctgcctccga 1621 acagcagcag cagcagcagc agtcgttgtc gttcgaacac cggcgcaact cgggctacca 1681 gcagcaacac cagcagcaca acaactacta tcaatattac tattcacagc ccaagcagtt 1741 gaccattgcc tcgttcctgc agaaggaact gctgcccgat agtagcggcg aaaaggccag 1801 tagcaacagc aacagcaaca gcagcagcag caacagcaat ctcatcagca gcaacagcaa 1861 ctactcacgg cagcaatatg gccatcaatc ggtgggttct ggctaccagc agcgctaccg 1921 caatgctcag agtgtctacc agcaatacca gcagcagcat caccaagcac agcagcaaca 1981 ttcccatcag cagttccgtc ggaagcacgg cgacaacagc aacagcagca gcaaccatgg 2041 tagtggaatc aatcagaaga agatgcacta cagccccacg ggaaagaatg gtgatcccgt 2101 ggagagatcc tcgagagatc ctggacagca gcagcagcag catcaccatt tacaccacca 2161 gcagaagaca atcgagatcc tggccagcag caactttaat gccatgcacc gtcgcatgca 2221 gggcggtaat aataacaaga atggctacta tcagcacaac aactatcatc cgctggcggg 2281 ggaaagcggc accacgccca ctcgttcgga gcaccagaac atctacaatc tcacctacgt 2341 gcatgtggac atggaggcat catcctcggg agcaggaggc gatgcaacac cggtggtcaa 2401 gccgagcatt tccataacgc cggctgcctc ttcctcggcg gcagccacca cgccaaccac 2461 tgtggttgct cctccgcttc caccgccgca tccacgtaac atgtttgggc cgccaccgcc 2521 accgctggta atgcagctac atgtctcacc ggtcagcacg ccaacgccca ccaaaatgat 2581 cagttgtgcc cagttggacg aggccattac gtcggcggcg gcgacggcca gtggtgacca 2641 gaacttggcc acgagtcctg gctacaatca ggctgcagct gcgggttcct ttataactat 2701 tccgccgcag caacagcagt cgtctcatcc acagccaccg ccaccgccgc cgccgctgcc 2761 gcagatgttc cactttcact ttgccgaggg gttctgcaat ccggtagctc ctccgggacc 2821 tcctcatccg cccgtttggc cgcattcagg ttcgccctgc taccaggtgc cagcaggtac 2881 ttctcctcat aataaagatg tgagtgctgc ggttggtttg cggcccgttt cgccagctct 2941 ttcgtcctcc tcgctgggca gcgagtcgca ttggagcagt cgcttgagcc acggaggtca 3001 tggaagtcac ggaagccatg gaagtcacct ctccatttcg cccactccca gtgctcagtt 3061 gtcgccgcat ccgctgcagc tagccaacca ccatgggcat ccccatgggc agatgaatgg 3121 gcatgcaatg agctcgtatt tgccgcaccg accaccacct cctccacatc ctcatgcggc 3181 catctcatcg ccgacgccag gcgccacagg ttcggctccc tggtacgagc tgctcctgcc 3241 acccgatcgc tacttggccc aagcccgcaa cgtggaggtg gccgtccagc cggagaagct 3301 catttgcatg tgcaagtacg atagcctgtc ggcggagatc tggaagagat tccgggcagc 3361 ccagcagacg cacaagaagt tcaaggtgaa gatgcgtctc tggcggtacc tcttcctctg 3421 gatgaatcag cccatgtttg agcggtaccg catctgcctg gtgggctcga ccattacggg 3481 ctttggcacg gactcctcgg acatcgacat gtgtttgctg cccgagcagg gggcacatcc 3541 tcaccagcag cagcagcagc actaccacca gcagcaccac cacttccaca acgaaaagcg 3601 caccgaggcg ctgatcatcc tcactttgtt caatgcggtc ctgaaggaca cggaggtctt 3661 ccaagacttc aatctgatcg aggcgagagt gccgattttg cgcttcaagg acgtcaccaa 3721 tggaatcgag gtcgatctga acttcaacaa ctgcgtgggc attaaaaaca cctatctgct 3781 tcagctctac gcacaactgg attggcggac acgaccgctg gtggtgattg tgaagttgtg 3841 ggcccagtac catgatatca acgacgccaa acgcatgacc atatcgagct actcgctggt 3901 gctaatggtc ctgcactatc tgcagcacgc ctgcgtgccc catgtgctgc cctgcctgca 3961 cactttgtat ccggagaagt tccagctggg ccagcaggat tgccttgacc tagacctcat 4021 cgaacccatc gagccctacc aggcgctgaa caaccagacg ctcggcgagc acctgctggg 4081 cttcttcaag tactacagca cctttgactt ccggaactat gccatctcca tacgaactgg 4141 cggcgtgctg ccggtggcca catgtcggat ggccaagagc cccaagaacg atgtctacca 4201 gtggaaggag ctcaacatcg aggagccctt cgatctgtcc aatacggcac gatccgtcta 4261 cgattatgca acgtttgagc gtgtgaaggg tgtctttctg gcctcggcac gacgcctcga 4321 tcacaccctc gatttggcca ccgtctttcg gcccattcga ccacccgaga ccttttccca 4381 acagcagcag cagcaactgc cctatccaaa tcccggccag cagcggagtg caggaggagg 4441 aggaggagga ggtgccgctc caatgtccag caaattgatc ccagatgcag ccacaacctt 4501 tgccgaagcg acggcagcga atgtcgctta gttacttgca gaaaatatga agaaaatcaa 4561 aggatataca aaagaatgtc caagaatgtt agagaatcaa aacgagaaac ctacctcata 4621 aatgaaaatt cgagaggagc aaaaaacgag aaaccaaaat tgcaatagaa tttccatttg 4681 aatgcttgcc tatcttgtta aatgttatta tattcaacta tttatacttt tatacactcg 4741 atttgtttta tcggatccca attaatcatt gtaaacatcc acggaggtta aacggtgtgc 4801 gatgttcgtg tccctcctcc tgtggcgtgt atgtagtatc cttttgaaaa gcgaaaatgt 4861 cacccgaaaa tgtaaaattg caagttctgt aaaataaagt aacaacaaca gatgttccca 4921 attaaa