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LOCUS XM_017139710 7734 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017139710 VERSION XM_017139710.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139710.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7734 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7734 /gene="e(y)3" /note="enhancer of yellow 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056070" CDS 655..6531 /gene="e(y)3" /codon_start=1 /product="supporter of activation of yellow protein" /protein_id="XP_016995199.2" /db_xref="GeneID:108056070" /translation="MNDLRQQQMVAATSSSGSESGTGTAVESAAATSTAGSSGAAGRP QPNCSATSTSSNSAKPVATASSSSEEEQRVSSTSSPAQRDQQLNADRDRNQEQDQEQE PQQQEALHHNQPGHITSTTASPPPTQPPPTTPCDDAPSTTGASASSASSSSASGEAGE AAMAATALEVEGGEERIILKLSKHSSSSSSSNPNSNPNESQTAGGDERRVEPLRIQLP SGGGAGVAEGGLADPDASSCSSSCAEDEVSVASTLGQQLRNTPHIVPKLTIRAANERR VGSVVPKLTIKLPENPAAASGSSSAACSSSAIQSSAAGGAALPAKNDAHLSSLSPASA SSSSASSSSSSSSSSSLAMEMQQTVPKLMIKTTLAGSSCISSSEEHQQQIPKLTIKTG GDMHTVIMTHDLNNAQSIPKLTIKTKSIELLEEEQQPPQQQQQPLPKLTIKNLCSPKH KVRAVLEEKPLTAVVVSSKLAKPTANSTMTNGGESNSSSQEFCGFSEPEAAEEGRRNS DDMVIDDSLAKEPKIFLSAAANGMTGKPVQPQHNVVDMVDLTSSPSPGSSPAHVANNY PNNLLLECASGDPVGGATAAAASSPAANSNILLSQLTAPAKSFTTAPPLKSKSSKYPQ LTERLMANGGVAPGGGATGEQPLVSGNSAPQQSIIESIEILDSPDRSPLIAYMEEEEE EEVVHLNNHHQSNHKDDQHLEELENNNENHLKRTSSGENESPSSGIPPSKQRRLDNDE NDQQTQNCHDPARKCSPGDSQLPPSHRSRKQKHERILNTDLEDALFPQQQAISTPDQN GAGATAIEVDREEVKVQDPLDQPNTPLPPIVATPVPTTGKKRGRPKRIQNQSAAAESA GVTPKPGTPQEEASSAVKSRRVQLLRKRLAIDMVEQTDAAVKGTTSSVADGPNARIDE ELPGAAPETPKSRDHRQLRATRRTTTHNASPNQQPTPKSTRKRQSKASSAQQQQPPSP EAESNNNNNSSSMSFALTAQIDLTMCSSSSSTSSGAAANHQQVIGGSGSSSMLPPTTI LSSSDPLPDVIFQPNDFSSIMATQQLRSPRPSSISGGSAGGGSQPDSHDEDNYNSALD NSGDESVATLPMLSMATPTPRGRGRGRGSRGGRSRGGSSSADRASSAGGIAATTPNTQ PRAPRMSRGASAVAKAIAMSRPRCVGGLKHQPDPERLKGLFSPSPQVFEEDTRMSADL SNSSQSMASLMEPPLTPQKQPDFLNNEESQSSMVSNVSMLDSNQGQSVDAILGSAAKR PKKKKMEICVAEDTDYSASSIAEYDWPPPKGCCPSKNRDTFMIQEQVALYLGITSFKR KYPDLPRRAVDMEERNWLQEKGLVSERMCDLGITAVWASDILDIMYADFYDKYEEYKE YIRLKHLREIEAKQKALGLTVGAGRGLQARDRAMLSTSKWNVYFNKTRKDERQACMDL QTFTVNQPLPKTAPLATCLQRSLANVVREAAEAENMPVPPDLLKPRVYDEAFRNPDYA YPLALVPDQFALGYREFDPAELRAYPLETALDTPPEDLLHLIQGNNNNGEEEIKTKDV AEEQEATAASGSKSDQTVAAAAPVRRSRRSARQHTDKVRTASNSSTSSAQSHSSASSG NGSSSDTDSDDESDFSSSSSCSSSTGASSGSEDEDGSRLSNCGVCQRSQHRNARNVPE AFIRCYSCRRRVHPSCIEMPQRMLGRARNYNWQCADCKCCIKCKSSQRPGKMLYCEQC DRGYHIYCLGLKTVPDGRWSCERCCVCMRCGATRPEGQPQVAAALSPKTAAASRSKRL KWVNEYQVDYLTKQREHAAMYCVPCARTKPAAKRQQTNVIAAAAAATVVTATATVLPS VSEAMVASPIASPGLTTNGDCALSPAAAAAPLSPKAAVLEATTAVNNSTNIAGTMSRQ RQSVNITTMQCSSSSSSSCVIEDAAPATGAAATGGAGGGGGAPTATTPIGIAPPPVVA " misc_feature 4501..4782 /gene="e(y)3" /note="N-terminal winged helix DNA-binding domain found in PHD finger protein 10 (PHF10) and similar proteins; Region: WH_NTD_PHF10; cd21085" /db_xref="CDD:411035" misc_feature 5605..5769 /gene="e(y)3" /note="PHD finger superfamily; Region: PHD_SF; cl22851" /db_xref="CDD:473978" misc_feature order(5605..5607,5662..5673,5683..5685,5752..5754) /gene="e(y)3" /note="histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:276966" misc_feature 5773..5904 /gene="e(y)3" /note="PHD finger 2 found in PHD finger protein 10 (PHF10) and similar proteins; Region: PHD2_PHF10; cd15529" /db_xref="CDD:277004" misc_feature order(5773..5775,5809..5823,5833..5835,5887..5889) /gene="e(y)3" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277004" polyA_site 7734 /gene="e(y)3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaccgtact cttttcgtac tcggaatcga aaaaaaacat aagcataccg tttaataatg 61 aatgcataag aacgttcgac gcgcgccgag actgagaccg agaccgagca gagaaacgca 121 tgaatcgtgc gtgcggccag cgagttggtt acctattttt ttgacgtttg ccccgcgaga 181 ggaggagctt taagtgcgtt gtcgttgtcg tcttgttgta ccaacatcga attcgaatcg 241 ttaaaagtgc gtggaaaagt gtacgaaacg aaaccaatac acggaaagtg ggacaaacgg 301 cagcaacggc gagtgtccgt gtctctgtgt gtgtgccgtg ccgtgtgccc gtctgtgtgt 361 gtgtgtgtcc gctgctgctg gcactgtgtg cgagtgtgtg cgtgcgtgcc tctgcctgcc 421 tcagtgcttc tgcttcgaaa tcgaaacgat tcactcgatt cagatcgaaa tgaagtgaaa 481 aatcgcctga aaaacgcttt aaacgcaact gcagtcaaag tgcatcgaaa tatgagcatg 541 agtcgcgaat tgtgcacgca aaaccaaatc aaatctactc catcttcttt tgtctgactt 601 ctgagcgacg actttgccgc atggctggcg gccactggac aatcgaatat agcaatgaat 661 gatttacgtc agcagcagat ggtagcagcg acatcgtcat caggatcgga atcgggaacg 721 ggaacagcgg tagaatcggc agccgccacg tcgacggcgg gatcatcagg agcagcaggt 781 cgcccccagc ccaattgcag tgccactagc accagtagca actcggccaa gccagtggcc 841 acagcgagca gctcgagcga ggaggagcag cgtgttagct ccacatcgtc gccagcccag 901 cgggatcagc agctgaatgc ggatcgggat cggaatcagg agcaggatca ggagcaggag 961 ccacagcagc aggaggcact gcatcacaat cagcccggcc atataaccag caccacagcg 1021 tcgcctccgc cgacgcaacc gccgccgacg acgccgtgcg acgatgcccc aagcacaact 1081 ggagcatctg catcatcggc cagcagcagc tcagcatccg gagaagcagg cgaagcagca 1141 atggctgcca cggcgctcga ggtagagggc ggtgaggagc gtataatcct gaagctatcc 1201 aagcactcct cctcttcgtc ctcctccaat cccaactcaa acccaaatga atctcagacg 1261 gcgggaggcg atgagaggcg cgtggagccg ctgcgcatcc agttgcccag cggaggagga 1321 gctggagtcg ccgaaggagg cttggccgat cccgatgcct cctcctgctc ctcctcctgc 1381 gccgaggacg aagtatccgt ggccagcact ttgggccaac agctgcgcaa cacaccgcac 1441 atagtgccaa agctgacgat tcgcgcggcg aacgagaggc gcgtgggtag cgtggtgccc 1501 aagctgacca tcaagctgcc cgagaatcca gcagctgcct ctggttcctc ctccgcagcc 1561 tgctcgtcgt ctgctatcca gtcatcagca gctggaggag cagcattgcc cgccaagaac 1621 gatgcccacc tgtccagcct gtcgcccgcc tccgcctcgt cctcatctgc ctcgtcctcc 1681 tcctcctcgt catcgtcttc ctcgctggcg atggagatgc agcagacggt gcccaagctg 1741 atgatcaaga ccacgctggc cggcagcagc tgcataagca gcagcgagga gcaccagcag 1801 cagataccaa agttaaccat caagacgggt ggcgatatgc atacggtcat tatgacgcac 1861 gatctgaata atgcacagag cataccgaag cttacgatta aaaccaagtc cattgagctg 1921 ctggaagagg agcagcagcc gccgcagcag cagcagcagc ctttgcccaa gctgaccatc 1981 aagaacttgt gctctcccaa gcacaaagtg cgtgcggtgc tcgaggagaa gcccctaaca 2041 gcggtggtgg tatcctccaa gctggcgaaa cccacagcca attccacgat gacaaatggc 2101 ggcgagtcga acagcagcag tcaggaattc tgcggattct ctgagccgga ggcggcggaa 2161 gaaggacgcc gcaattcgga cgacatggtg attgatgatt cgctggccaa ggagcccaag 2221 atctttcttt ccgccgctgc aaatggaatg acagggaaac cagtgcagcc gcagcataat 2281 gtagtggata tggtggacct gacatcgtct ccatcgccag gatcttcgcc agcccatgtt 2341 gcgaataact atccaaacaa cctgctactc gagtgcgctt ctggtgaccc agttggagga 2401 gcaactgccg ccgctgcctc gtcgcctgcc gccaattcga acatcctgct tagtcagcta 2461 acagctccag ctaaaagctt caccactgca ccaccgctca agagcaaatc tagcaagtat 2521 cctcagctaa cggagcgcct gatggccaat ggaggagtag cccctggagg aggagcaacg 2581 ggcgagcaac ccttggtcag tgggaattcc gcgccacagc aatccattat cgagtccatc 2641 gagatcctgg attcacccga tcgcagtccc ttgattgcct acatggaaga ggaggaggag 2701 gaggaggtcg ttcacctcaa taaccatcat caaagcaacc acaaagatga tcagcatttg 2761 gaggagttgg agaacaacaa cgagaatcac ttgaagcgca cgagcagcgg ggaaaacgaa 2821 tctcccagta gtggcatccc tcccagcaaa cagagacgtc tggacaacga tgagaacgac 2881 cagcagacgc agaattgtca cgatcctgcg agaaagtgca gtcccggtga ttcgcagctg 2941 ccgccgtcgc atcgctcgcg caaacagaag cacgaacgca tcctgaacac agacctggag 3001 gatgccctct ttccacaaca gcaggcgatt tctacgccgg atcagaatgg agcaggagca 3061 acggcgattg aagtggatag agaggaggtt aaggtacagg atccacttga ccagccgaac 3121 actccgctcc ctccaatagt agctacacct gtgcccacca caggcaagaa gcggggacgc 3181 ccgaaaagga tccaaaatca atccgcagcc gccgagtctg cgggagttac tcctaaacct 3241 ggaacgccac aggaggaggc cagcagcgcc gtaaaatcgc gacgcgtgca gttgctgcgc 3301 aagcgactgg ccatcgatat ggtagagcaa acggatgcgg cggttaaggg cacaacgtca 3361 tccgtagccg atgggccaaa tgccaggata gatgaagaac tacctggtgc tgctcccgag 3421 actcccaaga gtcgcgatca ccgccagctg agggccacgc ggcgcacgac gacgcacaat 3481 gccagtccga accagcagcc cactcccaag tccacgcgga agcgacagag caaggccagt 3541 agtgcccagc agcagcagcc gccgagtcca gaggcagagt ccaataataa caataacagt 3601 agtagcatgt cctttgccct gactgcccag attgacctga ccatgtgctc gtccagctca 3661 tcgacgtcct cgggcgctgc tgccaaccat cagcaggtga tcggtggcag tggcagcagt 3721 tcgatgctgc caccaacgac cattttgtcc tcatcggacc ctctgcccga tgtcatcttc 3781 cagccaaatg atttctcctc gatcatggcc acccagcagt tgcgctcgcc gcgaccctcg 3841 agcatcagcg gtggcagtgc cggcggcggc agtcagccgg attcgcacga tgaggataac 3901 tataatagtg cgttggacaa ttccggagat gaatccgttg caacgttacc aatgctttcc 3961 atggccacgc caacgccacg gggacgcgga cgtggccggg gatccagggg aggccgcagc 4021 agaggaggct cttcctcggc agatcgagcg tccagcgccg gaggcatcgc cgcgacgacg 4081 ccaaacacgc agccaagggc gccgcggatg agccgcgggg caagcgccgt ggccaaggcc 4141 atcgccatga gtcgaccgcg ctgcgttggc ggcctgaagc accagcccga tccggagagg 4201 ctcaaaggcc tgttcagtcc gtccccgcaa gtgttcgagg aggacacgcg catgagcgcg 4261 gatctaagca acagcagtca gtcgatggcc agcctaatgg aacctccgct aacgccgcag 4321 aagcaacccg acttcctcaa caacgaggag tcacagtcgt ccatggtgag caatgtaagc 4381 atgctcgatt ccaaccaggg tcaatctgtc gatgcgattc tgggctccgc ggccaaacgt 4441 ccaaagaaga aaaagatgga aatttgcgtg gccgaagaca cggactacag cgcttccagc 4501 attgccgagt acgactggcc gccgcccaaa ggctgttgtc cttcgaagaa ccgcgacacc 4561 tttatgatcc aggagcaggt ggccctctat ttgggcatca ccagcttcaa gcgcaaatat 4621 ccggatctgc cgcgccgcgc cgtcgacatg gaggagcgca attggctgca ggagaagggg 4681 ctggtcagcg agcgaatgtg cgacctgggc attaccgccg tgtgggcctc cgacatcctg 4741 gacattatgt acgccgactt ttacgacaag tacgaggagt acaaggagta cattcgcctg 4801 aagcacttgc gcgagatcga ggccaagcaa aaggctctgg gattgactgt gggcgcagga 4861 cgtggcctcc aggcgcgtga ccgtgcgatg ctctcgacta gcaagtggaa cgtatacttc 4921 aacaagaccc gcaaggacga gcggcaggcc tgcatggatc tgcagacatt cacggtgaat 4981 cagccgctgc cgaagacggc gcccctcgcc acctgcctac agcgctccct ggcgaatgtg 5041 gtgcgggaag cggcggaagc ggagaatatg ccggtgccgc ctgatcttct gaaaccccgc 5101 gtctacgacg aggccttccg caacccggac tacgcctatc cacttgcatt ggtgccggat 5161 cagttcgcct tgggctaccg cgagttcgat cccgctgagt taagagccta tccactggaa 5221 acggcgctgg acacgccacc ggaagatctg ttgcacctca tccagggcaa caacaacaat 5281 ggtgaagagg aaatcaaaac aaaggatgtg gcggaggaac aagaggcaac tgctgcgagc 5341 gggagcaaat ccgatcaaac ggtagcggcg gcggctccag ttcgacgcag cagaagatcg 5401 gccaggcagc atacggataa ggtgcgcacg gccagcaact cgagcacatc ctccgcgcag 5461 tcgcactcct ccgcgtccag cggcaatggc agcagcagtg atacggacag cgacgatgag 5521 agcgacttta gcagcagctc gagttgtagc agttcaaccg gagcctcgag tggcagcgag 5581 gatgaggatg gaagcaggct gtccaactgt ggtgtctgcc agcgcagcca gcaccgcaat 5641 gccaggaacg tcccggaggc ctttattcgc tgctacagct gccgaaggcg cgtccatccc 5701 agctgcattg agatgcccca gcgaatgctg ggtcgcgcga ggaactacaa ctggcagtgc 5761 gccgattgca agtgctgcat caagtgcaag agcagtcagc ggccaggaaa gatgctctac 5821 tgcgagcagt gcgaccgagg ctaccacatc tactgcctgg gcctcaaaac ggtgccggat 5881 ggacgctgga gctgtgaacg ctgctgtgtg tgcatgcgat gcggagccac tcggccggag 5941 ggtcagcccc aggtggccgc cgccctgtca ccgaaaactg cggcggcgtc gcgcagcaaa 6001 cgcttgaaat gggtgaatga gtaccaagtg gactacttga cgaagcagcg ggagcatgcc 6061 gccatgtact gtgtaccctg tgcgcggacc aagcccgccg ccaagcgcca gcagacgaat 6121 gtgatagcag cagcagcagc ggcgaccgta gtcacagcta cggcgacagt cctgccctcc 6181 gtttcggaag ccatggtcgc cagtccgatt gcgagccccg gtttaacaac caatggagat 6241 tgtgctctct caccggcggc agcggcggcg ccactgagtc caaaggcagc cgttttggag 6301 gcgacgacgg cggtgaacaa ctcgacaaac attgcgggaa cgatgagcag gcagcggcag 6361 tcggtcaata tcacaacgat gcagtgcagc agcagcagca gtagcagttg cgtcatcgag 6421 gatgcggcgc ccgcaacggg agcggcggct acaggaggag caggaggagg cggtggagca 6481 ccgactgcca cgactcccat tggcatagct ccgccgccgg ttgttgcctg agtgggggtc 6541 atacgttatt gtgccaagcg cactctaacg gacttatagt aagcgccgga cgcgccgccc 6601 atcccaaaaa cacacagatg catagtatta atgaatgcga aaacacagag gagcaaaagg 6661 aggaggagca gcaactattt aagaaacgtt ttttttttat actatgatta ttcttattat 6721 tgtcagtaca tcgtattgca aatgttttat atacataaat atgaatattc ctattatagt 6781 tatgttactt aactttgcta atgttaacgt taacaaccaa accgaaccac atgaaaaaga 6841 acacacacat gacaagcacc ccaaaaaaca ccaagtagac cgatgcttaa gttgaatagc 6901 ctagctttta agtcacaact tcattttctg tttctagaga attcatttcg actatatatt 6961 tcagttttta atgggatagt ccatggaggc ctggttgcgc taaatgttcc gtgttactcg 7021 tttacttttc aatcgaaata gcgtctattt ctcagcctct gaatacaagt gcatctatct 7081 atcttattga ttttgaatgt ttttaattta atgcgccgaa ttttttgaac atttatatgt 7141 atgatatatg tattgataag aactacagac cgtagttaag cacagcctaa gtagtgtctt 7201 cgtgtgcggt agctgcttgt ttattttttt tcgtcgttta gtttcggtag attcgtaagc 7261 ggaaaatggt ctggagccgc caagttcttc tactctgtaa ttgtacggct aagaatgtat 7321 tataaatgta atttatgcta acacataccc aacaatcgaa cccacacacc gcaggcaaaa 7381 acaaattcta tatatatatc tagtacatat attacctgta acaataagat gaaaaagcac 7441 aagaacagat acaattttgg cagtcggcga ggaggaggat caggatgagg atgagaaaaa 7501 ccgtgtgtga aataatatta ggctgatacc gccgcagaat aataatctat gtttaggcta 7561 ggcgataggc gataaggata agttttcagt ctacttaaca caaagtggat atgagagacc 7621 taatctactt ttccatggaa tttaaagctt aagtcctcta ataagtgaaa ttattcttat 7681 gtatacatac taaaagattt atttttaagt cgaataaaac agcagcatta ataa