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LOCUS XM_017139646 2109 bp mRNA linear INV 09-DEC-2024 (LOC108056034), mRNA. ACCESSION XM_017139646 VERSION XM_017139646.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139646.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2109 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2109 /gene="LOC108056034" /note="uncharacterized LOC108056034; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056034" CDS 125..1900 /gene="LOC108056034" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_016995135.2" /db_xref="GeneID:108056034" /translation="MSKRQRDGLDAPAKRVAKNRFKKLVRSVILNMQWLNEATEDTGI SLNVKKNVAMLVRQKRKVGMMTMAEKSLLRTPHSTRTVEDRKKLCNIVANLACFSKFP PKVRARLVPHVKFMAVTPGRVIMKEGDFPVTIYFIIAGEVEMSRNVLNKATKGYELQS EAIFGPGDCIGDIDVMEDAPRTNTYIATTNCELLAVFNTNYRYVLQPHMQKLWLEKKA ALRALDYFNFLNEEQIVNASKYGTIQQFDPLETIYTEDLGSMSFVYFVLSGECVVLQC LHMKVNMVDREKVFELAMVPKRDTGALAMQNGSKANNEPFFDVNEYMQSSSSMDENKQ SKKRGLRKMGLKEIQRACADMKKPPPRRSTKDTGRNRQRTRHTRLLREAERPEVREEY ELYISDEGEDTYDMSMSEDGAEERLSVDSGRRSPISPIISDAGGGDVESESEEGSEIF TASSHSHQTTVDESDGLEHYETHFIDVGSLTYGGIFGLGEKMHHRVIMARTTVQCILI PRFWLFEPAQNPGNIWQRQRFYIECNIPTREDLFKDFLKTRKWEKFRRDYIESILNSE SLANFTKVEDIPIISRIVETKADEA" misc_feature 416..754 /gene="LOC108056034" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:237999" misc_feature order(635..640,665..673) /gene="LOC108056034" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(731..739,749..754) /gene="LOC108056034" /note="flexible hinge region; other site" /db_xref="CDD:237999" ORIGIN 1 tgaaatcttt catacgaaca caatctgtgg cttttgggac tacgaacgag agctgcaacc 61 ataaacagat agtttttaca tggaaattgc aaaaggaaac gggataaaaa taagttagtc 121 catcatgtcc aagcgccaac gcgatgggct tgatgccccg gcaaagaggg tggcgaagaa 181 tcggttcaaa aagctggtcc gatccgtaat actgaacatg cagtggctga atgaggccac 241 cgaggacacg ggaatttcgc tgaatgtgaa gaagaatgtg gccatgctgg ttcgacagaa 301 gcgcaaagtc ggcatgatga ccatggcgga gaaatcatta ctacgcactc cacattctac 361 acgtaccgtc gaggacagaa agaaactgtg caacattgtg gcaaatctgg cgtgcttttc 421 aaaatttcca ccaaaagtcc gggcccgtct tgtgccacat gtcaaattta tggcggtgac 481 tcccggacgc gttatcatga aggagggaga ttttccagta acgatatatt tcataatcgc 541 cggagaagtg gaaatgtcca ggaatgtatt aaataaggcc accaagggtt atgagctgca 601 atcggaggct atctttggac ccggcgattg tattggcgac attgacgtca tggaagatgc 661 tcccaggacc aacacctaca tcgccacaac caattgtgag ctcctggctg tctttaatac 721 aaactaccga tatgtcctgc aacctcatat gcaaaagttg tggctggaaa agaaggcagc 781 tctacgggct cttgactatt tcaactttct taacgaagag cagattgtaa atgccagcaa 841 gtatggaacc attcagcaat tcgatccctt ggagacgatc tacacagagg atttggggtc 901 catgagcttt gtctactttg ttctcagtgg cgagtgcgtc gtgctgcagt gtcttcacat 961 gaaggtgaac atggtcgaca gggagaaggt ttttgagctg gcaatggtac ccaaacggga 1021 cactggagcc ctcgcgatgc aaaatggtag caaggccaac aacgaaccat ttttcgacgt 1081 taacgagtac atgcaatcca gttcgtcgat ggatgagaac aagcaaagca agaagagggg 1141 gctgcgcaaa atgggtctca aagagataca gcgagcctgt gccgatatga aaaaaccccc 1201 acctagaaga tcaaccaagg atacaggacg aaatcgtcaa cgaacgcggc atacacgact 1261 cctgcgggag gcagaacggc cggaagtgcg ggaggagtac gagttgtata tatcggatga 1321 gggcgaagac acctacgata tgtctatgtc cgaagatggc gccgaggaac ggttgagtgt 1381 tgattccggc aggcggtcgc caatttcacc catcatcagc gatgcaggcg gtggcgatgt 1441 ggagagcgag tcggaggagg gttcggaaat attcaccgca tcgagccatt cgcatcagac 1501 aactgtcgat gaatcggatg gcctggagca ctatgaaacg catttcatcg acgttggctc 1561 actaacctat ggcgggatct tcggtttggg cgagaaaatg catcatcgtg tcattatggc 1621 gaggacaacg gtgcagtgca tcctaatacc gagattctgg ctctttgagc cagctcaaaa 1681 tcctggcaac atttggcagc gacagcgttt ctatatcgaa tgcaatatac caaccagaga 1741 ggatttgttc aaggactttc tcaagacacg aaagtgggag aagttcagac gcgactacat 1801 tgaaagcata ctaaactccg aatcattggc caactttaca aaggtcgaag atataccaat 1861 cataagtcgc attgtggaga caaaagctga tgaagcttga gttcctggca tttacttgcc 1921 gtttatattt atacatttgc aagtatttcc agcatttttc aaaatttatt ggagccatgt 1981 aaaatggagg ttaaggaatt cttcaattcc aatacctaga tatcacttat ttacggaaag 2041 catattgtga atattgtgaa acagtacttt aagtttataa gcctgaaatt gaatatatga 2101 gcacttatg