PREDICTED: Drosophila takahashii leucine rich repeat containing

LOCUS       XM_017139635             826 bp    mRNA    linear   INV 09-DEC-2024
            protein 20 sclp (Sclp), transcript variant X2, mRNA.
ACCESSION   XM_017139635
VERSION     XM_017139635.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139635.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..826
                     /gene="Sclp"
                     /note="leucine rich repeat containing protein 20 sclp;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:108056025"
     CDS             147..674
                     /gene="Sclp"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 20
                     isoform X2"
                     /protein_id="XP_016995124.1"
                     /db_xref="GeneID:108056025"
                     /translation="MAHLVVKVIERCENANESAHLDLSSCELMQIPDAVYHLMRNTEL
                     VTCNLSGNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLTALTKLNISNNSFI
                     VLPQVVFKLESLASLDAQDNAILEIDTDEAIASDSLALVDLRNNPLSRNCRRKLQNFK
                     TSFRLEISKDVEDDW"
     misc_feature    <204..>593
                     /gene="Sclp"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    204..269
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    270..347
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    348..416
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    417..485
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    486..557
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     polyA_site      826
                     /gene="Sclp"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cgtatttata tttaggccgt tccattcacg tgctcagtgg gctggcgtaa agatcgagga
       61 aacaaagggg gaattatata ttataggtat agctacattg ataaggaagg ttccctcaac
      121 ggattgcatg taaacctggt gttgtgatgg cgcacttggt ggtgaaggtg attgagcgtt
      181 gtgaaaatgc caacgaaagt gctcatttag atctttcgag ctgcgaactg atgcagatac
      241 ccgatgcagt ctatcaccta atgaggaata cagagctggt gacctgcaat ctcagtggca
      301 acgttctcaa gagcgtttca cccaaattct cgcaaaagtt cagcaccatt acagatctta
      361 atctttcaca caacaaactt tcgaggctgc cagaggagtt cgccagcttg actgcgttga
      421 ccaagctgaa tatctcaaac aactcgttca tcgtcctacc acaagtagtc tttaagcttg
      481 agagtctcgc cagtctggat gcccaggaca atgccatatt ggaaattgat acggatgagg
      541 ctatagccag tgactctttg gctctcgttg atcttcggaa taatccgttg agcagaaact
      601 gccgacgcaa gctgcaaaac ttcaaaacct ccttccgtct tgagatctcc aaggatgtcg
      661 aagatgactg gtaaatcaga tggatggatg gatgtccatc ccgtttccaa caccaacaca
      721 ccaaaaacaa atctctcgtt atctccgagg agagcgccct aaacggccct ccttcatctt
      781 atttattctg tttataaaat ttatatattt atcaaaaaac aaacaa