PREDICTED: Drosophila takahashii leucine rich repeat containing

LOCUS       XM_017139634            1097 bp    mRNA    linear   INV 09-DEC-2024
            protein 20 sclp (Sclp), transcript variant X1, mRNA.
ACCESSION   XM_017139634
VERSION     XM_017139634.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139634.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1097
                     /gene="Sclp"
                     /note="leucine rich repeat containing protein 20 sclp;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins"
                     /db_xref="GeneID:108056025"
     CDS             211..945
                     /gene="Sclp"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 20
                     isoform X1"
                     /protein_id="XP_016995123.1"
                     /db_xref="GeneID:108056025"
                     /translation="MRPFGNDITNIPPNNGSNGNNGNDPNDGNGNERNIRSSNIEDNE
                     DNGSDDPSIPPHIARIGGIGTFPPIAGQGVIRVVRRCEDAKENQRLDLSSCELMQIPD
                     AVYHLMRNTELVTCNLSGNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLTAL
                     TKLNISNNSFIVLPQVVFKLESLASLDAQDNAILEIDTDEAIASDSLALVDLRNNPLS
                     RNCRRKLQNFKTSFRLEISKDVEDDW"
     misc_feature    <472..>864
                     /gene="Sclp"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:443914"
     misc_feature    472..540
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    541..618
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    619..687
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    688..756
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    757..828
                     /gene="Sclp"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     polyA_site      1097
                     /gene="Sclp"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aagagagtca cgttcagttg gtttgcgaag tagctcgcgt ttaaataatc caaataattc
       61 aaataatatt aaatacagtt atattttgaa ctataaacag tgattgaaaa ttgaaaatat
      121 atctatattt atttttttcg agtgattagc cagtgagaca ccaaacaatt tgaaatatat
      181 aacaacggtt aaaaaaacaa atcaaacaaa atgcggcctt ttggcaacga tataacaaac
      241 atccccccca ataatggaag taatggtaat aatggtaacg atcccaacga tggaaatgga
      301 aatgagcgaa acattcgcag cagcaacatc gaggataatg aggataatgg atcggacgat
      361 cctagtatac cacctcatat agcaaggatc ggtggaattg gcacctttcc tccgatcgcc
      421 ggtcagggag tcatccgggt ggttcggcgc tgcgaggacg ccaaggagaa ccaaaggctg
      481 gatctttcga gctgcgaact gatgcagata cccgatgcag tctatcacct aatgaggaat
      541 acagagctgg tgacctgcaa tctcagtggc aacgttctca agagcgtttc acccaaattc
      601 tcgcaaaagt tcagcaccat tacagatctt aatctttcac acaacaaact ttcgaggctg
      661 ccagaggagt tcgccagctt gactgcgttg accaagctga atatctcaaa caactcgttc
      721 atcgtcctac cacaagtagt ctttaagctt gagagtctcg ccagtctgga tgcccaggac
      781 aatgccatat tggaaattga tacggatgag gctatagcca gtgactcttt ggctctcgtt
      841 gatcttcgga ataatccgtt gagcagaaac tgccgacgca agctgcaaaa cttcaaaacc
      901 tccttccgtc ttgagatctc caaggatgtc gaagatgact ggtaaatcag atggatggat
      961 ggatgtccat cccgtttcca acaccaacac accaaaaaca aatctctcgt tatctccgag
     1021 gagagcgccc taaacggccc tccttcatct tatttattct gtttataaaa tttatatatt
     1081 tatcaaaaaa caaacaa