PREDICTED: Drosophila takahashii enhancer of rudimentary (e(r)),

LOCUS       XM_017139625            1003 bp    mRNA    linear   INV 09-DEC-2024
            transcript variant X1, mRNA.
ACCESSION   XM_017139625
VERSION     XM_017139625.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017139625.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1003
                     /gene="e(r)"
                     /note="enhancer of rudimentary; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     Proteins"
                     /db_xref="GeneID:108056019"
     CDS             237..551
                     /gene="e(r)"
                     /codon_start=1
                     /product="protein enhancer of rudimentary"
                     /protein_id="XP_016995114.1"
                     /db_xref="GeneID:108056019"
                     /translation="MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRN
                     PNTPTITYDISQLFDFIDTLMDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAFSP
                     NA"
     misc_feature    240..533
                     /gene="e(r)"
                     /note="Enhancer of rudimentary; Region: ER; pfam01133"
                     /db_xref="CDD:460078"
     polyA_site      1003
                     /gene="e(r)"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acgagtcctt ctctagccgc actcccgctt cacaacactg cccgccgcct gtgctttcca
       61 acactagaac tggcaaaaaa taaaaatcca agcgttgaat ttaccgaatc gtcgtctcga
      121 atcgccataa ttctatagct tttattctga attccgatcg gaatcggcga aaagcaagga
      181 ctgaaagtct cggaattcat acgacttgga aaaaaaccac tgaaaacaaa atcaccatgt
      241 cgcacaccat cctactggtt cagccgggcg ctcgtccaga gacccgcacc tactgcgact
      301 acgagagcgt gaacgagtgc atggagggcg tgtgcaagat ctacgaggag cacctgaagc
      361 ggcgcaaccc gaacaccccg accatcacct acgacatcag ccagctgttc gacttcatcg
      421 acacgctgat ggacatcagc tgcatggtgt accagaagag caccaacacc tatgccccct
      481 acaacaagga ctggatcaag gagaagatct atgtgctgct gcgccaggcg gccttcagcc
      541 cgaatgccta actaaagatc aaaataccaa ataacccgat cataaactaa ggagatgcgt
      601 gaactcacga ggacaacatg attttaggga gggaatcgac gctgctgccg cctgctaact
      661 acacattaat acgatcacaa caaccaagga cggcagacaa acaatgcaaa cacaaagaga
      721 acgagaaact gtttaactta gaaatggaaa acttacttta cacgtactaa tataatgtat
      781 atacacccaa ctctgacaac tgtgtgtttt gaatgagcca tgttcgcagg ataaggtgtt
      841 cttatagcta gcaatctgtt gtataaatac tctaaatggc aagcgttttt ttttgtgtat
      901 gttccctttg cgctagtttt agtctaccag tatgtcaaat aataaatcaa cgtgacttgt
      961 ctggtcagga tattaaatat atgattacta gcctggcttt ata