Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017139489 6266 bp mRNA linear INV 09-DEC-2024 member 3 (Abca3), transcript variant X5, mRNA. ACCESSION XM_017139489 VERSION XM_017139489.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139489.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6266 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6266 /gene="Abca3" /note="ATP binding cassette subfamily A member 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055910" CDS 596..5722 /gene="Abca3" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X2" /protein_id="XP_016994978.2" /db_xref="GeneID:108055910" /translation="MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVL VRTLVDTEQRGVKYYVEQNITDLSLLHTGLSNFKFIVCYSPVNPVLKKLVDEAWQSLG MKDVCESENAAQLEVDTVSQSAFAGIQFDDAWANLTESDPLPDDFHFALRFPSELRTA TMAIANTWLTMRLFPTIDLTGPRNEADQDGGIPPGYLREGFLPLQHSLSMAYLRQKSG VESLPEIMMQRYPYPAYIYDPLLEGMSSIMSLIILLSFIYPCTYITKYITAEKEKQLK EVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEGVAVLTHANFTALVFF LIIYIIASICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINTYDDLSLTAKLGW SLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVICMT ICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYAGVEDIPNGHVEQRDPKAFETEPE GKHIGLQMRHLKKKFGDKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPT SGTAILNGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQE VAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ LWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCHGTSFFLKKQYGSGYRL ICVKRDDCETNEVTALLNKFIPGLKPECDIGAELSYQLPDSASSKFEEMFGQLEDQSD ELHLNGYGVGITSMEEVFMKVGAEKDSTGNLKDQSEIMNGGSGFRGEDDNESVQSDGI FSENRRLLQGFQLLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIETQG TFQELKPITMSLTQYPLAVTVLDRSAVANGTSTANLANSYEKMALAHGSNYGLELTGK QLFEDYILELGKTIQVRINSRYLVAATINETMIIAWLNNQALHTAPLTVNMVHNAIAD QLMGSNVRIEVTNAPLPYTTNTLLSQLSMGNNLGTQLASNLCFCMCFVSSIYILFLIK ERESRAKLLQFVGGVKVWTFWLSQFICDFATYIVTALIVVITIVCFQEPGLSSFAELG RYYLLLLLFGFAVLPFIYIMSLFFKEPATGFARVSIVNIFCGMALFIVVVVMSSELFD TKDTADILGWIFRIFPHFSLAMGLNKVYTNTATRNACAKAGAIPPILLCELVPQCCNI KPFFAWEEPGVLPETVYMTVTGVVFFLIIIVLEFRLINELMFKIRQMLTKPPPPPPEG HLDDDVANERERIIHMSSDELVTKNLVLDRVTKYYGQFLAVNQVSLCVQEVECFGLLG VNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGR EVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGS PSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG EFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSAGFARNPDEQTVPAQMAQQD IDAVKEFVEHEYPHSILQEEYQGILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVS QTTLEEIFLEFAKYQREDTRANHRLSELRKLCKCLLANEY" misc_feature <968..5650 /gene="Abca3" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 6266 /gene="Abca3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccggcggcg ttagaagtac tacactacta ttattattgt tttatcacag tgaacagctg 61 tttaaccctg aaaataaaat cacagcaaaa gttaatagat tgtgcaaaac aaataaagga 121 aatatagcga gtgcgcactt tgcttaatga atcgaataaa ctatgaactt ttgggccctc 181 aatgacgcag cgagagataa aaactaataa cagcactata tttgtacata tattgtttat 241 gtgtcgcggt gtttgtgcgg aataatcatt agacggccgc acggtgggtt caaatcggtg 301 taatcgccgc agatttgccg tgacagtgca aatagaggtg tgcagaaagg gcaacgggtc 361 agcataaata attaattgca attgccgcga gtccattgcc aatcgattat gcagtaatgc 421 tcgacgccga tctaattttt atcactaagt gggcccgcac ttaatcgcac aaacaacaaa 481 cagaattgca atttcaatta ttgcccgcaa aacgtggaaa ggatcctaat tttaaccaat 541 tttaatgtcg agataatcta gaaaaagcga aaagccaatc aaacaaagct gcaaaatggc 601 taaggtcacg aactgggaca agtttgtgct gctgctgtgg aagaactgga cgctccaatg 661 gaaccacaag tggcagatgg tcatcgagct ggtgctgccg gcgatattct ccctgctcct 721 cgtcttggtc cgcaccctgg tcgatacgga gcagaggggg gtcaagtact atgtggagca 781 gaatataaca gatctcagtt tgttgcacac cggcttgtca aacttcaagt tcatcgtgtg 841 ctactcaccc gtgaatcctg tgctcaagaa actggtggac gaggcgtggc agagcctggg 901 aatgaaggat gtgtgcgagt cggagaacgc ggcccaactg gaggtggaca cggtcagtca 961 gagcgccttt gccggcatcc agttcgacga tgcgtgggcc aatctcacgg agtcggatcc 1021 actgcccgat gattttcact tcgccctgcg cttcccctcg gaactgcgaa cggcgacgat 1081 ggccattgcg aatacctggc taacgatgcg attgttccca acgattgatc tcacgggtcc 1141 gcgaaatgag gcggatcagg atggtggcat accgccgggc tatttgagag agggtttcct 1201 gccactgcag cacagcctgt cgatggcgta cctgaggcag aagtcgggcg tagagagtct 1261 gccggaaata atgatgcaac gctatccgta tccagcctac atctacgatc ccctgctcga 1321 gggcatgtcc tcgataatgt cgctgatcat actgctgagc ttcatctatc cctgcacgta 1381 catcaccaag tacatcaccg ccgagaagga gaagcagctg aaggaggtga tgaagatcat 1441 gggcctgagc aattggctgc actggacggc ctggtttgtg aagtccttca tcatgctaac 1501 gatatcggcc attctgatag ccatactggt caagatcaat tggtccgaag gggtggccgt 1561 gctgacgcat gccaatttca ctgcgctcgt cttcttcctg atcatctaca tcatagcgag 1621 catctgtttc tgcttcatga tggccacctt cttctcgcgc gccagcacag cggccgccgt 1681 cacgggtctg atatggttca tcgcctacat accctactcg tttaccatca acacctacga 1741 cgacctgagt ttgacggcca aactgggctg gagcctgatc tcgaacacgg ccatgggctt 1801 cggcatcaag ctgatcctgg gcttcgaggg caccggcgag ggtctgcagt ggagcaactt 1861 ctttacgccc gtctccgtgg acgacacact gacgctgggc gccgtgatga tcatgatgct 1921 ggtgtcgtgc gtcatctgca tgaccatctg tctgtatgtg gagcaagtga tgccgggcag 1981 cttcggtgtg ccgcgtccct ggaactttcc gtttacccgc gagttttggt gcggcgaacg 2041 ggagtacgcg ggagtggagg acatacccaa cgggcatgtg gagcagcgcg accccaaggc 2101 ctttgaaacg gagcccgagg gcaagcatat cggtctgcag atgcggcact tgaagaagaa 2161 gtttggcgac aagatggttg tgaagggtct gtccatgaat atgttcgaag atgagattac 2221 cgtgttactc gggcacaatg gagccggtaa gacaacgacc atatcgatgt taaccggcat 2281 gtttccaccg acgagcggca cggccattct gaacggcagc gatattcgca ccaatatcga 2341 aggtgcccgc atgtcgctcg gcatttgtcc gcagcacaat gtcctcttcg acgagatgag 2401 tgtgtcgaat cacatacgct tcttcagccg catgaaggga ctgcgcggca aggcggtgga 2461 gcaggaggtg gccaagtatc tgaagatgat cgagctggag gacaaggcga atgtggcctc 2521 gtcgaaactg tcgggcggca tgaagcgcaa gctctccgtc tgctgtgccc tctgcggcga 2581 caccaaggtg gtgctgtgcg acgagcccag ctcgggcatg gatccatcgg ccaggcgaca 2641 gctgtgggat ctgctgcagc aggagaaggt cggtcgcacc ctgctgctga ccacgcactt 2701 catggacgag gccgatgtgc tgggcgatcg gattgccatc atgtgcgacg gcgagctcaa 2761 gtgccacgga acctccttct tcctgaagaa acaatacgga tcgggctacc gcttgatctg 2821 tgtaaagcga gatgattgcg aaacgaacga ggtgaccgcc ctgctgaaca agtttattcc 2881 cggcctgaag ccggagtgcg acattggcgc cgagctgtcc tatcaactgc ccgatagcgc 2941 ctcctccaag ttcgaggaga tgttcggcca gctggaggat cagtccgacg aactgcatct 3001 gaatggctac ggcgtgggca tcacctcgat ggaggaggtg tttatgaagg tcggcgccga 3061 gaaggacagc accggcaacc tgaaggacca gagcgagatt atgaacggcg gcagcggctt 3121 ccgcggcgag gatgacaacg aatctgtaca gtccgatggc atcttctcgg agaatcgccg 3181 cctgctccag ggattccagc tgctctcgaa ccaatggaag gccatgctgc tcaagaagtt 3241 cctctatacg tggcgcaaca agttgctgct gctcatccag aacattatgc ccgtcttctt 3301 tgtggtcgtg accattttga ttatcgaaac gcagggcact ttccaggaac tgaagcccat 3361 aaccatgtcg ttgactcagt atccactggc cgtcaccgtt ttggatcgct ccgcggtggc 3421 gaatggtacg tccaccgcga atctagccaa tagttatgag aaaatggccc tggcccatgg 3481 cagcaattac ggtttggaac tgacgggcaa gcagctcttt gaggactaca tcctggagct 3541 gggcaagacg atccaggtgc gcatcaactc gcgttacctg gtggccgcca ccatcaacga 3601 gaccatgatc attgcctggc taaacaatca ggctctgcat acggctcccc tgaccgtcaa 3661 tatggtgcac aatgctattg ccgatcagct gatgggttcg aatgtgagaa tcgaggtgac 3721 caatgccccg ctgccgtaca cgaccaacac tctgctgtcg cagctaagca tgggcaataa 3781 tctgggcacc cagctggcct ccaatctttg cttctgcatg tgcttcgtta gctccatcta 3841 catcctgttc ctgatcaagg agcgcgagtc cagggccaag ctgctgcagt ttgtgggcgg 3901 cgtgaaagtt tggaccttct ggctgtcgca gttcatttgc gatttcgcca cctacattgt 3961 gaccgctctg atcgtcgtga tcacgatcgt ctgcttccag gagccggggc tctcgagctt 4021 cgcggaactg ggccgatact atttgctgct gctgctcttc ggcttcgccg ttctgccctt 4081 catctacatt atgtcgctgt tcttcaagga gccggccacc gggtttgctc gcgtctccat 4141 cgtcaatatc ttctgcggca tggccctgtt cattgtcgtg gtggtaatgt cctcggagct 4201 attcgacacc aaggacacgg ccgacatact gggctggata ttccgcatct ttccgcactt 4261 ttcgctggcc atgggtctga acaaggtcta cacgaacacg gccacgagga atgcctgcgc 4321 caaggccgga gcgatcccac ccattctgct ctgcgagctg gtgccacaat gctgcaacat 4381 caagccgttc ttcgcctggg aggagcctgg cgttctgccc gagaccgtct acatgactgt 4441 caccggcgtc gtcttcttcc tcatcatcat tgtgctggag tttagactca tcaacgagct 4501 aatgttcaag atccgtcaaa tgttaactaa accaccgcca ccaccgccgg agggccactt 4561 ggatgacgat gtggccaacg aacgggagcg cattattcac atgtcctcgg atgagctggt 4621 caccaagaat ctagtgctgg atcgggtcac caagtactac ggtcagttcc tggccgtcaa 4681 tcaggtgtcg ctctgcgtac aggaagtcga atgctttggg ctgctgggcg tgaacggagc 4741 aggcaagaca acgaccttca agatgatgac cggcgacgag cggatcagct cgggagccgc 4801 ctacgtccaa ggtctgagcc tggaatcgaa catgaacagc atttacaaga tgatcggcta 4861 ctgtccgcag ttcgatgcgc tgctggacga tctgacgggt cgcgaggtgc tgcgcatttt 4921 ctgcatgctg cgcggcgtgc aggagtctcg cattcgccag ctctcggagg atctggccaa 4981 gtcgtttggc ttcatgaagc acatcgacaa gcagacgcac gcctatagtg gcggcaataa 5041 gcgtaagctg agcacggcca ttgctgtgat cggcagtccg tccgtcattt acctggatga 5101 gcccaccacg ggcatggatc cggcggccag gcgtcagctg tggaatatgg tctgtcgcat 5161 tcgtgactcg ggcaaatcca ttgtcctgac ctcccacagc atggaggagt gcgaggcgct 5221 gtgcacgcga ctggccatta tggtgaatgg tgaattcaag tgcattggct ccacgcagca 5281 cttgaagaac aagttctcca agggcctgat cctcaagatc aaggtgcgtc gcaatctgga 5341 ggcgctgcgg caggcgcgtt tgagcgccgg ctttgctcgc aatccggatg agcagacggt 5401 gcccgcccaa atggcccagc aggacataga tgccgtcaag gagtttgtgg agcacgagta 5461 tccacactcc atactgcagg aggagtacca gggcattttg acgttctaca ttccactgac 5521 tggggtgaaa tggtcgcgca tctttggcct gatggagagc aatcgcgatc agctgaatgt 5581 ggaggactac tcggtcagcc agacgacgct ggaggagatc ttcctggagt tcgccaagta 5641 ccagcgcgag gatacgcgcg ccaatcaccg cctctccgaa ctgaggaagc tgtgcaagtg 5701 cctgctagca aatgagtatt gaaccaacta cctgaacgga tccgatccga tcctgagatc 5761 ttaaaacact cacagataat aatgttttat accaaaaaag aacaacgccg atgcctgaac 5821 agctaacaaa tagtttctaa gctcgacctg acaatagata gcagcgatta tgcctttttt 5881 cattgtgatc atctagcaaa atttacacta taacgaagag atatctataa actgtatgtt 5941 ttctatatat atatatagtt atatctgctt gacttgcacg ataagttccg atgatctttt 6001 ctgtcttgtt taatcactct tttttcgccc cctaaaaagt attggccagt tgtggccgga 6061 aactattccc agcgcctaaa ggaaacttgt tgcatataga gagtactaaa tatatgtgta 6121 tttatttcga tgtacttaga ccggataacc aaagcgtgta aataagtcaa tttaactgtg 6181 gcacaaactc tacgatacat atgagaattt acaaataatg ttaaatgtgt actatacgat 6241 tgaattaaat tttatctaaa tgtaaa