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LOCUS XM_017139486 6490 bp mRNA linear INV 09-DEC-2024 member 3 (Abca3), transcript variant X4, mRNA. ACCESSION XM_017139486 VERSION XM_017139486.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017139486.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6490 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6490 /gene="Abca3" /note="ATP binding cassette subfamily A member 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055910" CDS 754..5946 /gene="Abca3" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_016994975.2" /db_xref="GeneID:108055910" /translation="MAKVTNWDKFVLLLWKNWTLQWNHKWQMVIELVLPAIFSLLLVL VRTLVDTEQRGVKYYVEQNITDLSLLQHSLHRSSYLGKLIALIAPNRRSTGLSNFKFI VCYSPVNPVLKKLVDEAWQSLGMKDVCESENAAQLEVDTVSQSAFAGIQFDDAWANLT ESDPLPDDFHFALRFPSELRTATMAIANTWLTMRLFPTIDLTGPRNEADQDGGIPPGY LREGFLPLQHSLSMAYLRQKSGVESLPEIMMQRYPYPAYIYDPLLEGMSSIMSLIILL SFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILV KINWSEGVAVLTHANFTALVFFLIIYIIASICFCFMMATFFSRASTAAAVTGLIWFIA YIPYSFTINTYDDLSLTAKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSV DDTLTLGAVMIMMLVSCVICMTICLYVEQVMPGSFGVPRPWNFPFTREFWCGEREYAG VEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKKFGDKMVVKGLSMNMFEDEITVL LGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGICPQHNVLFDEMS VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCD GELKCHGTSFFLKKQYGSGYRLICVKRDDCETNEVTALLNKFIPGLKPECDIGAELSY QLPDSASSKFEEMFGQLEDQSDELHLNGYGVGITSMEEVFMKVGAEKDSTGNLKDQSE IMNGGSGFRGEDDNESVQSDGIFSENRRLLQGFQLLSNQWKAMLLKKFLYTWRNKLLL LIQNIMPVFFVVVTILIIETQGTFQELKPITMSLTQYPLAVTVLDRSAVANGTSTANL ANSYEKMALAHGSNYGLELTGKQLFEDYILELGKTIQVRINSRYLVAATINETMIIAW LNNQALHTAPLTVNMVHNAIADQLMGSNVRIEVTNAPLPYTTNTLLSQLSMGNNLGTQ LASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFATYIVTA LIVVITIVCFQEPGLSSFAELGRYYLLLLLFGFAVLPFIYIMSLFFKEPATGFARVSI VNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMGLNKVYTNTATRNA CAKAGAIPPILLCELVPQCCNIKPFFAWEEPGVLPETVYMTVTGVVFFLIIIVLEFRL INELMFKIRQMLTKPPPPPPEGHLDDDVANERERIIHMSSDELVTKNLVLDRVTKYYG QFLAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMN SIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDK QTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIV LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQAR LSAGFARNPDEQTVPAQMAQQDIDAVKEFVEHEYPHSILQEEYQGILTFYIPLTGVKW SRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQREDTRANHRLSELRKLCKCLL ANEY" misc_feature <1192..5874 /gene="Abca3" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" polyA_site 6490 /gene="Abca3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgtttttct taggaccatg agcctttgct ttttaattgt tgtggtggga aaatttaaat 61 attaaaggtc ctgcctttaa agactattga aattattcag ggtatccaac gtttttatcg 121 ggtaattaaa tgaacttttc aattaacaat tattaacagt catgacatac ggaataccgg 181 gcactccgtg agtaatagat ccactcccga tatattatga ttttatgggg cccccagaca 241 tccctgcccc gatccgataa agtcgaaaat cgaacgcgga catatgtctg cttgttccac 301 cggcagagag agagagagaa tatgggggct tatcattttt tagcccggcc aaaacaataa 361 atgctatttg ctttattggc cttccatgga gcaagagctc agctagattg cgttctattg 421 ataaataagc aagattgccc agcgttgcga ttcagttcga aatagtccgc tcgtcgaaac 481 ggtcgagtgt ccgccggagt tcgcgagttc ccaaagttcc tgagttctcg agttcccgag 541 ttcccgattt tgaacgtatc gagttcccga gtccccaagt tcccgccgcc tactcatcca 601 tataggcata ccgattgttt tttctttatt tgttcttgtg cggtggcccg tgtgacactt 661 tttatttggc taagcttcgg atcctaattt taaccaattt taatgtcgag ataatctaga 721 aaaagcgaaa agccaatcaa acaaagctgc aaaatggcta aggtcacgaa ctgggacaag 781 tttgtgctgc tgctgtggaa gaactggacg ctccaatgga accacaagtg gcagatggtc 841 atcgagctgg tgctgccggc gatattctcc ctgctcctcg tcttggtccg caccctggtc 901 gatacggagc agaggggggt caagtactat gtggagcaga atataacaga tctcagtttg 961 ttgcaacatt cgttgcatag atcgtcctac cttggcaagc tcatagcgct gattgcaccc 1021 aatcgacgga gcaccggctt gtcaaacttc aagttcatcg tgtgctactc acccgtgaat 1081 cctgtgctca agaaactggt ggacgaggcg tggcagagcc tgggaatgaa ggatgtgtgc 1141 gagtcggaga acgcggccca actggaggtg gacacggtca gtcagagcgc ctttgccggc 1201 atccagttcg acgatgcgtg ggccaatctc acggagtcgg atccactgcc cgatgatttt 1261 cacttcgccc tgcgcttccc ctcggaactg cgaacggcga cgatggccat tgcgaatacc 1321 tggctaacga tgcgattgtt cccaacgatt gatctcacgg gtccgcgaaa tgaggcggat 1381 caggatggtg gcataccgcc gggctatttg agagagggtt tcctgccact gcagcacagc 1441 ctgtcgatgg cgtacctgag gcagaagtcg ggcgtagaga gtctgccgga aataatgatg 1501 caacgctatc cgtatccagc ctacatctac gatcccctgc tcgagggcat gtcctcgata 1561 atgtcgctga tcatactgct gagcttcatc tatccctgca cgtacatcac caagtacatc 1621 accgccgaga aggagaagca gctgaaggag gtgatgaaga tcatgggcct gagcaattgg 1681 ctgcactgga cggcctggtt tgtgaagtcc ttcatcatgc taacgatatc ggccattctg 1741 atagccatac tggtcaagat caattggtcc gaaggggtgg ccgtgctgac gcatgccaat 1801 ttcactgcgc tcgtcttctt cctgatcatc tacatcatag cgagcatctg tttctgcttc 1861 atgatggcca ccttcttctc gcgcgccagc acagcggccg ccgtcacggg tctgatatgg 1921 ttcatcgcct acatacccta ctcgtttacc atcaacacct acgacgacct gagtttgacg 1981 gccaaactgg gctggagcct gatctcgaac acggccatgg gcttcggcat caagctgatc 2041 ctgggcttcg agggcaccgg cgagggtctg cagtggagca acttctttac gcccgtctcc 2101 gtggacgaca cactgacgct gggcgccgtg atgatcatga tgctggtgtc gtgcgtcatc 2161 tgcatgacca tctgtctgta tgtggagcaa gtgatgccgg gcagcttcgg tgtgccgcgt 2221 ccctggaact ttccgtttac ccgcgagttt tggtgcggcg aacgggagta cgcgggagtg 2281 gaggacatac ccaacgggca tgtggagcag cgcgacccca aggcctttga aacggagccc 2341 gagggcaagc atatcggtct gcagatgcgg cacttgaaga agaagtttgg cgacaagatg 2401 gttgtgaagg gtctgtccat gaatatgttc gaagatgaga ttaccgtgtt actcgggcac 2461 aatggagccg gtaagacaac gaccatatcg atgttaaccg gcatgtttcc accgacgagc 2521 ggcacggcca ttctgaacgg cagcgatatt cgcaccaata tcgaaggtgc ccgcatgtcg 2581 ctcggcattt gtccgcagca caatgtcctc ttcgacgaga tgagtgtgtc gaatcacata 2641 cgcttcttca gccgcatgaa gggactgcgc ggcaaggcgg tggagcagga ggtggccaag 2701 tatctgaaga tgatcgagct ggaggacaag gcgaatgtgg cctcgtcgaa actgtcgggc 2761 ggcatgaagc gcaagctctc cgtctgctgt gccctctgcg gcgacaccaa ggtggtgctg 2821 tgcgacgagc ccagctcggg catggatcca tcggccaggc gacagctgtg ggatctgctg 2881 cagcaggaga aggtcggtcg caccctgctg ctgaccacgc acttcatgga cgaggccgat 2941 gtgctgggcg atcggattgc catcatgtgc gacggcgagc tcaagtgcca cggaacctcc 3001 ttcttcctga agaaacaata cggatcgggc taccgcttga tctgtgtaaa gcgagatgat 3061 tgcgaaacga acgaggtgac cgccctgctg aacaagttta ttcccggcct gaagccggag 3121 tgcgacattg gcgccgagct gtcctatcaa ctgcccgata gcgcctcctc caagttcgag 3181 gagatgttcg gccagctgga ggatcagtcc gacgaactgc atctgaatgg ctacggcgtg 3241 ggcatcacct cgatggagga ggtgtttatg aaggtcggcg ccgagaagga cagcaccggc 3301 aacctgaagg accagagcga gattatgaac ggcggcagcg gcttccgcgg cgaggatgac 3361 aacgaatctg tacagtccga tggcatcttc tcggagaatc gccgcctgct ccagggattc 3421 cagctgctct cgaaccaatg gaaggccatg ctgctcaaga agttcctcta tacgtggcgc 3481 aacaagttgc tgctgctcat ccagaacatt atgcccgtct tctttgtggt cgtgaccatt 3541 ttgattatcg aaacgcaggg cactttccag gaactgaagc ccataaccat gtcgttgact 3601 cagtatccac tggccgtcac cgttttggat cgctccgcgg tggcgaatgg tacgtccacc 3661 gcgaatctag ccaatagtta tgagaaaatg gccctggccc atggcagcaa ttacggtttg 3721 gaactgacgg gcaagcagct ctttgaggac tacatcctgg agctgggcaa gacgatccag 3781 gtgcgcatca actcgcgtta cctggtggcc gccaccatca acgagaccat gatcattgcc 3841 tggctaaaca atcaggctct gcatacggct cccctgaccg tcaatatggt gcacaatgct 3901 attgccgatc agctgatggg ttcgaatgtg agaatcgagg tgaccaatgc cccgctgccg 3961 tacacgacca acactctgct gtcgcagcta agcatgggca ataatctggg cacccagctg 4021 gcctccaatc tttgcttctg catgtgcttc gttagctcca tctacatcct gttcctgatc 4081 aaggagcgcg agtccagggc caagctgctg cagtttgtgg gcggcgtgaa agtttggacc 4141 ttctggctgt cgcagttcat ttgcgatttc gccacctaca ttgtgaccgc tctgatcgtc 4201 gtgatcacga tcgtctgctt ccaggagccg gggctctcga gcttcgcgga actgggccga 4261 tactatttgc tgctgctgct cttcggcttc gccgttctgc ccttcatcta cattatgtcg 4321 ctgttcttca aggagccggc caccgggttt gctcgcgtct ccatcgtcaa tatcttctgc 4381 ggcatggccc tgttcattgt cgtggtggta atgtcctcgg agctattcga caccaaggac 4441 acggccgaca tactgggctg gatattccgc atctttccgc acttttcgct ggccatgggt 4501 ctgaacaagg tctacacgaa cacggccacg aggaatgcct gcgccaaggc cggagcgatc 4561 ccacccattc tgctctgcga gctggtgcca caatgctgca acatcaagcc gttcttcgcc 4621 tgggaggagc ctggcgttct gcccgagacc gtctacatga ctgtcaccgg cgtcgtcttc 4681 ttcctcatca tcattgtgct ggagtttaga ctcatcaacg agctaatgtt caagatccgt 4741 caaatgttaa ctaaaccacc gccaccaccg ccggagggcc acttggatga cgatgtggcc 4801 aacgaacggg agcgcattat tcacatgtcc tcggatgagc tggtcaccaa gaatctagtg 4861 ctggatcggg tcaccaagta ctacggtcag ttcctggccg tcaatcaggt gtcgctctgc 4921 gtacaggaag tcgaatgctt tgggctgctg ggcgtgaacg gagcaggcaa gacaacgacc 4981 ttcaagatga tgaccggcga cgagcggatc agctcgggag ccgcctacgt ccaaggtctg 5041 agcctggaat cgaacatgaa cagcatttac aagatgatcg gctactgtcc gcagttcgat 5101 gcgctgctgg acgatctgac gggtcgcgag gtgctgcgca ttttctgcat gctgcgcggc 5161 gtgcaggagt ctcgcattcg ccagctctcg gaggatctgg ccaagtcgtt tggcttcatg 5221 aagcacatcg acaagcagac gcacgcctat agtggcggca ataagcgtaa gctgagcacg 5281 gccattgctg tgatcggcag tccgtccgtc atttacctgg atgagcccac cacgggcatg 5341 gatccggcgg ccaggcgtca gctgtggaat atggtctgtc gcattcgtga ctcgggcaaa 5401 tccattgtcc tgacctccca cagcatggag gagtgcgagg cgctgtgcac gcgactggcc 5461 attatggtga atggtgaatt caagtgcatt ggctccacgc agcacttgaa gaacaagttc 5521 tccaagggcc tgatcctcaa gatcaaggtg cgtcgcaatc tggaggcgct gcggcaggcg 5581 cgtttgagcg ccggctttgc tcgcaatccg gatgagcaga cggtgcccgc ccaaatggcc 5641 cagcaggaca tagatgccgt caaggagttt gtggagcacg agtatccaca ctccatactg 5701 caggaggagt accagggcat tttgacgttc tacattccac tgactggggt gaaatggtcg 5761 cgcatctttg gcctgatgga gagcaatcgc gatcagctga atgtggagga ctactcggtc 5821 agccagacga cgctggagga gatcttcctg gagttcgcca agtaccagcg cgaggatacg 5881 cgcgccaatc accgcctctc cgaactgagg aagctgtgca agtgcctgct agcaaatgag 5941 tattgaacca actacctgaa cggatccgat ccgatcctga gatcttaaaa cactcacaga 6001 taataatgtt ttataccaaa aaagaacaac gccgatgcct gaacagctaa caaatagttt 6061 ctaagctcga cctgacaata gatagcagcg attatgcctt ttttcattgt gatcatctag 6121 caaaatttac actataacga agagatatct ataaactgta tgttttctat atatatatat 6181 agttatatct gcttgacttg cacgataagt tccgatgatc ttttctgtct tgtttaatca 6241 ctcttttttc gccccctaaa aagtattggc cagttgtggc cggaaactat tcccagcgcc 6301 taaaggaaac ttgttgcata tagagagtac taaatatatg tgtatttatt tcgatgtact 6361 tagaccggat aaccaaagcg tgtaaataag tcaatttaac tgtggcacaa actctacgat 6421 acatatgaga atttacaaat aatgttaaat gtgtactata cgattgaatt aaattttatc 6481 taaatgtaaa